Wall clock time and date at job start Mon Mar 30 2020 03:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47963 * 110.99759 * 2 1 4 4 C 1.53938 * 86.17992 * 222.41625 * 3 2 1 5 5 C 1.53003 * 113.73121 * 138.07792 * 4 3 2 6 6 C 1.53002 * 109.46828 * 175.00092 * 5 4 3 7 7 N 1.46900 * 109.47242 * 180.02562 * 6 5 4 8 8 C 1.46853 * 110.99782 * 45.78976 * 7 6 5 9 9 C 1.53030 * 109.52304 * 185.83958 * 8 7 6 10 10 C 1.53121 * 109.28009 * 300.82170 * 9 8 7 11 11 C 1.53126 * 109.16045 * 57.65256 * 10 9 8 12 12 C 1.46845 * 111.00114 * 169.99990 * 7 6 5 13 13 H 1.09005 * 109.45322 * 294.17185 * 12 7 6 14 14 C 1.50695 * 109.46150 * 54.14736 * 12 7 6 15 15 H 1.07999 * 120.00325 * 5.71946 * 14 12 7 16 16 C 1.37879 * 120.00175 * 185.72461 * 14 12 7 17 17 N 1.31512 * 120.00311 * 197.96847 * 16 14 12 18 18 Si 1.86802 * 119.99678 * 17.96352 * 16 14 12 19 19 H 1.48498 * 109.47061 * 180.02562 * 18 16 14 20 20 H 1.48500 * 109.47431 * 300.00219 * 18 16 14 21 21 H 1.48501 * 109.47247 * 60.00545 * 18 16 14 22 22 C 1.47959 * 111.00024 * 260.64331 * 2 1 3 23 23 H 1.09000 * 109.47095 * 60.00085 * 1 2 3 24 24 H 1.08996 * 109.46544 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46709 * 300.00384 * 1 2 3 26 26 H 1.09004 * 113.75942 * 108.10027 * 3 2 1 27 27 H 1.09001 * 113.75901 * 336.73286 * 3 2 1 28 28 H 1.08997 * 113.73730 * 269.25589 * 4 3 2 29 29 H 1.08997 * 109.46985 * 55.00839 * 5 4 3 30 30 H 1.09001 * 109.47122 * 294.99871 * 5 4 3 31 31 H 1.09004 * 109.47311 * 59.99958 * 6 5 4 32 32 H 1.09000 * 109.47396 * 300.00244 * 6 5 4 33 33 H 1.09002 * 109.45964 * 65.82315 * 8 7 6 34 34 H 1.09000 * 109.45135 * 305.85276 * 8 7 6 35 35 H 1.08995 * 109.50615 * 180.87828 * 9 8 7 36 36 H 1.09004 * 109.50244 * 60.76071 * 9 8 7 37 37 H 1.08996 * 109.52175 * 297.74961 * 10 9 8 38 38 H 1.09000 * 109.52308 * 177.55657 * 10 9 8 39 39 H 1.08992 * 109.50084 * 182.40055 * 11 10 9 40 40 H 1.08999 * 109.53251 * 62.30878 * 11 10 9 41 41 H 0.96999 * 120.00226 * 354.78352 * 17 16 14 42 42 H 1.09003 * 113.76249 * 23.25888 * 22 2 1 43 43 H 1.08999 * 113.75481 * 251.89773 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9993 1.3814 0.0000 4 6 3.0211 0.8793 -1.0360 5 6 3.2611 1.8571 -2.1881 6 6 4.3768 1.3214 -3.0876 7 7 4.6077 2.2604 -4.1935 8 6 4.6705 3.6438 -3.7047 9 6 4.7654 4.6024 -4.8937 10 6 6.0179 4.2726 -5.7104 11 6 5.9504 2.8124 -6.1665 12 6 5.8211 1.9056 -4.9406 13 1 6.6931 2.0352 -4.2994 14 6 5.7343 0.4686 -5.3859 15 1 4.8278 -0.0945 -5.2198 16 6 6.8123 -0.1276 -6.0053 17 7 6.6433 -1.2301 -6.7020 18 14 8.5127 0.6311 -5.8551 19 1 9.4913 -0.1947 -6.6071 20 1 8.4925 2.0063 -6.4151 21 1 8.9060 0.6850 -4.4241 22 6 1.9993 -0.2246 -1.3629 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 2.4460 1.6803 0.9483 27 1 1.3010 2.1198 -0.3941 28 1 3.9459 0.5069 -0.5954 29 1 3.5527 2.8274 -1.7864 30 1 2.3456 1.9648 -2.7699 31 1 4.0853 0.3509 -3.4894 32 1 5.2923 1.2136 -2.5059 33 1 5.5479 3.7650 -3.0695 34 1 3.7719 3.8666 -3.1293 35 1 4.8277 5.6281 -4.5302 36 1 3.8817 4.4915 -5.5221 37 1 6.9044 4.4209 -5.0937 38 1 6.0664 4.9247 -6.5825 39 1 6.8592 2.5592 -6.7123 40 1 5.0856 2.6728 -6.8152 41 1 5.7768 -1.6657 -6.7181 42 1 1.3010 0.0441 -2.1557 43 1 2.4460 -1.2088 -1.5036 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260387248.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:44 Heat of formation + Delta-G solvation = 7.032562 kcal Electronic energy + Delta-G solvation = -19527.294471 eV Core-core repulsion = 16799.985121 eV Total energy + Delta-G solvation = -2727.309349 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.03363 -39.87416 -35.46988 -34.95273 -32.62093 -31.81217 -29.35120 -27.11665 -26.89779 -25.60517 -24.02722 -22.51687 -21.72979 -20.59795 -20.35322 -19.61988 -17.06605 -16.90343 -16.21077 -16.12951 -16.02499 -15.42591 -15.26978 -14.98904 -14.59354 -14.30743 -13.96259 -13.76247 -13.72308 -13.64771 -13.08304 -12.74610 -12.61709 -12.39824 -12.21761 -12.13465 -11.96351 -11.86152 -11.65997 -11.50783 -11.37515 -11.28645 -10.91267 -10.65855 -10.34510 -9.80397 -8.93768 -8.73249 -6.31168 1.41378 1.48177 1.67666 2.46329 2.97125 3.05870 3.19652 3.50107 3.77417 4.06739 4.11150 4.15344 4.21285 4.27831 4.34532 4.41999 4.48716 4.53914 4.54538 4.59364 4.68987 4.72301 4.76429 4.83623 4.84895 4.93923 4.94908 4.98894 5.10051 5.15807 5.21435 5.26065 5.30468 5.34823 5.39973 5.45876 5.60026 5.92755 6.06556 6.07471 6.30116 6.68353 6.78656 7.45417 8.66471 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021870 B = 0.005997 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.001478 B = 4668.266925 C = 5543.319418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.504 5.504 3 C 0.016 3.984 4 C -0.112 4.112 5 C -0.097 4.097 6 C 0.080 3.920 7 N -0.542 5.542 8 C 0.044 3.956 9 C -0.108 4.108 10 C -0.122 4.122 11 C -0.116 4.116 12 C 0.198 3.802 13 H -0.019 1.019 14 C -0.586 4.586 15 H 0.023 0.977 16 C -0.020 4.020 17 N -0.940 5.940 18 Si 1.078 2.922 19 H -0.288 1.288 20 H -0.241 1.241 21 H -0.273 1.273 22 C 0.002 3.998 23 H 0.038 0.962 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.041 0.959 32 H 0.008 0.992 33 H 0.021 0.979 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.042 0.958 41 H 0.250 0.750 42 H 0.073 0.927 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.908 11.789 11.580 18.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.226 5.226 3 C -0.113 4.113 4 C -0.132 4.132 5 C -0.135 4.135 6 C -0.048 4.048 7 N -0.267 5.267 8 C -0.083 4.083 9 C -0.145 4.145 10 C -0.159 4.159 11 C -0.155 4.155 12 C 0.090 3.910 13 H -0.001 1.001 14 C -0.624 4.624 15 H 0.042 0.958 16 C -0.218 4.218 17 N -0.577 5.577 18 Si 0.901 3.099 19 H -0.214 1.214 20 H -0.165 1.165 21 H -0.198 1.198 22 C -0.127 4.127 23 H 0.057 0.943 24 H 0.087 0.913 25 H 0.099 0.901 26 H 0.116 0.884 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.027 0.973 33 H 0.039 0.961 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.091 0.909 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.623 11.145 11.287 17.190 hybrid contribution -1.348 -0.409 0.016 1.409 sum -7.971 10.736 11.303 17.509 Atomic orbital electron populations 1.22894 0.88722 1.02678 1.01726 1.68440 1.10243 1.19603 1.24308 1.24004 0.96400 0.91043 0.99806 1.22915 0.98222 0.95982 0.96038 1.21673 0.98136 0.98821 0.94837 1.21766 0.96425 0.96018 0.90597 1.61880 1.38550 1.02241 1.24001 1.22337 1.00585 0.88521 0.96875 1.21552 0.97727 0.98753 0.96509 1.21667 0.98472 0.95568 1.00220 1.21925 1.00261 0.94998 0.98291 1.19384 0.86799 0.93641 0.91224 1.00116 1.22177 1.00165 0.97582 1.42522 0.95831 1.27014 1.06995 0.96407 0.91403 1.70984 1.27040 1.22600 1.37036 0.83644 0.71791 0.76995 0.77518 1.21428 1.16527 1.19829 1.24055 0.97337 1.00096 0.91162 0.94327 0.91254 0.90136 0.88429 0.89875 0.89412 0.89868 0.91434 0.94003 0.97342 0.96064 0.88826 0.89059 0.92059 0.92506 0.90810 0.93260 0.93942 0.94046 0.90918 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.21 9.65 127.69 1.23 1.02 16 2 N -0.50 -11.94 6.56 -934.05 -6.12 -18.06 16 3 C 0.02 0.32 7.55 86.41 0.65 0.98 16 4 C -0.11 -2.86 3.84 -10.15 -0.04 -2.90 16 5 C -0.10 -2.68 4.32 30.60 0.13 -2.55 16 6 C 0.08 3.11 4.64 86.30 0.40 3.51 16 7 N -0.54 -22.23 4.63 -875.51 -4.06 -26.29 16 8 C 0.04 1.39 4.85 86.32 0.42 1.81 16 9 C -0.11 -3.05 6.09 30.64 0.19 -2.86 16 10 C -0.12 -3.94 6.00 30.68 0.18 -3.76 16 11 C -0.12 -5.03 5.06 30.65 0.16 -4.88 16 12 C 0.20 9.43 1.37 44.19 0.06 9.50 16 13 H -0.02 -0.90 6.78 -2.38 -0.02 -0.92 16 14 C -0.59 -33.80 8.14 25.60 0.21 -33.60 16 15 H 0.02 1.51 6.79 -2.91 -0.02 1.49 16 16 C -0.02 -1.19 5.33 84.66 0.45 -0.74 16 17 N -0.94 -59.94 13.70 21.45 0.29 -59.65 16 18 Si 1.08 50.99 26.38 68.60 1.81 52.80 16 19 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 20 H -0.24 -10.09 5.61 99.48 0.56 -9.53 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 22 C 0.00 0.06 7.52 86.41 0.65 0.71 16 23 H 0.04 0.70 7.62 -2.39 -0.02 0.68 16 24 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 25 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.08 1.46 7.88 -2.39 -0.02 1.44 16 28 H 0.09 2.42 8.13 -2.39 -0.02 2.40 16 29 H 0.08 1.99 6.21 -2.39 -0.01 1.98 16 30 H 0.07 1.87 7.84 -2.39 -0.02 1.85 16 31 H 0.04 1.91 6.65 -2.39 -0.02 1.90 16 32 H 0.01 0.34 8.08 -2.39 -0.02 0.32 16 33 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.09 2.43 5.81 -2.39 -0.01 2.42 16 35 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.05 2.21 4.85 -2.39 -0.01 2.20 16 40 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.25 16.28 8.73 -92.71 -0.81 15.47 16 42 H 0.07 1.88 7.37 -2.39 -0.02 1.86 16 43 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -66.83 319.60 -2.62 -69.45 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.76 Total: 15.51 kcal Atomic # 6 Polarization: -38.46 SS G_CDS: 4.69 Total: -33.76 kcal Atomic # 7 Polarization: -94.11 SS G_CDS: -9.89 Total: -104.00 kcal Atomic # 14 Polarization: 50.99 SS G_CDS: 1.81 Total: 52.80 kcal Total: -66.83 -2.62 -69.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260387248.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.484 kcal (2) G-P(sol) polarization free energy of solvation -66.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds