Wall clock time and date at job start Mon Mar 30 2020 03:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47962 * 110.99826 * 2 1 4 4 C 1.53931 * 86.18002 * 222.41744 * 3 2 1 5 5 C 1.53000 * 113.73425 * 138.07981 * 4 3 2 6 6 C 1.53001 * 109.47334 * 176.89503 * 5 4 3 7 7 N 1.46902 * 109.47122 * 179.97438 * 6 5 4 8 8 C 1.46846 * 111.00121 * 314.21275 * 7 6 5 9 9 C 1.53030 * 109.52435 * 174.16395 * 8 7 6 10 10 C 1.53203 * 109.30370 * 59.17688 * 9 8 7 11 11 C 1.53123 * 109.11533 * 302.37368 * 10 9 8 12 12 C 1.46856 * 110.99619 * 190.00392 * 7 6 5 13 13 H 1.09000 * 109.46462 * 65.82793 * 12 7 6 14 14 C 1.50695 * 109.45128 * 305.84652 * 12 7 6 15 15 H 1.07997 * 120.00678 * 359.95743 * 14 12 7 16 16 C 1.37877 * 119.99541 * 179.97438 * 14 12 7 17 17 N 1.31516 * 120.00512 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99873 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47051 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47146 * 119.99970 * 18 16 14 21 21 H 1.48497 * 109.47267 * 240.00230 * 18 16 14 22 22 C 1.48193 * 111.07132 * 260.56878 * 2 1 3 23 23 H 1.09004 * 109.46932 * 60.00093 * 1 2 3 24 24 H 1.09004 * 109.46927 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47555 * 300.00144 * 1 2 3 26 26 H 1.08996 * 113.76137 * 108.09690 * 3 2 1 27 27 H 1.09009 * 113.85656 * 336.74636 * 3 2 1 28 28 H 1.09003 * 113.73418 * 269.25285 * 4 3 2 29 29 H 1.09006 * 109.47206 * 56.89814 * 5 4 3 30 30 H 1.09000 * 109.47535 * 296.89795 * 5 4 3 31 31 H 1.09004 * 109.46698 * 60.00561 * 6 5 4 32 32 H 1.08996 * 109.47607 * 300.00117 * 6 5 4 33 33 H 1.09004 * 109.46012 * 294.17710 * 8 7 6 34 34 H 1.08997 * 109.46257 * 54.15030 * 8 7 6 35 35 H 1.08997 * 109.50569 * 179.12357 * 9 8 7 36 36 H 1.09007 * 109.50504 * 299.19535 * 9 8 7 37 37 H 1.08994 * 109.57907 * 182.46159 * 10 9 8 38 38 H 1.08997 * 109.51203 * 62.24423 * 10 9 8 39 39 H 1.09002 * 109.50371 * 297.67165 * 11 10 9 40 40 H 1.09003 * 109.50070 * 177.59325 * 11 10 9 41 41 H 0.96995 * 120.00556 * 179.97438 * 17 16 14 42 42 H 1.08994 * 113.75801 * 23.23797 * 22 2 1 43 43 H 1.08996 * 113.81954 * 251.80426 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3814 0.0000 4 6 3.0210 0.8793 -1.0360 5 6 3.2610 1.8570 -2.1881 6 6 4.3439 1.2988 -3.1137 7 7 4.5738 2.2373 -4.2202 8 6 3.3023 2.7025 -4.7885 9 6 3.5756 3.7839 -5.8362 10 6 4.4682 3.2063 -6.9393 11 6 5.7647 2.6848 -6.3135 12 6 5.4279 1.6351 -5.2520 13 1 4.9016 0.8025 -5.7188 14 6 6.7008 1.1338 -4.6200 15 1 6.8594 1.2515 -3.5583 16 6 7.6631 0.5251 -5.3975 17 7 7.4704 0.3824 -6.6906 18 14 9.2407 -0.0971 -4.6140 19 1 9.2127 0.1820 -3.1558 20 1 9.3594 -1.5608 -4.8351 21 1 10.4037 0.5923 -5.2282 22 6 2.0018 -0.2266 -1.3641 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 2.4459 1.6803 0.9482 27 1 1.3021 2.1212 -0.3936 28 1 3.9458 0.5069 -0.5953 29 1 3.5852 2.8177 -1.7878 30 1 2.3365 1.9908 -2.7498 31 1 4.0197 0.3381 -3.5140 32 1 5.2684 1.1650 -2.5521 33 1 2.7859 1.8648 -5.2574 34 1 2.6791 3.1149 -3.9950 35 1 2.6326 4.1180 -6.2690 36 1 4.0790 4.6282 -5.3651 37 1 4.7016 3.9849 -7.6654 38 1 3.9486 2.3873 -7.4365 39 1 6.3032 3.5115 -5.8499 40 1 6.3864 2.2337 -7.0870 41 1 8.1476 -0.0455 -7.2376 42 1 1.3043 0.0405 -2.1580 43 1 2.4506 -1.2100 -1.5037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260387250.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:48 Heat of formation + Delta-G solvation = 27.721899 kcal Electronic energy + Delta-G solvation = -19490.326060 eV Core-core repulsion = 16763.913867 eV Total energy + Delta-G solvation = -2726.412192 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.94699 -38.08316 -33.88795 -32.87979 -31.25526 -29.50585 -28.07748 -26.11023 -25.24313 -24.20679 -22.60314 -21.17047 -20.20247 -19.42940 -18.60926 -16.45137 -15.87658 -15.50452 -14.98878 -14.74792 -14.35226 -14.05242 -13.63199 -13.28478 -13.09413 -12.72295 -12.62667 -12.43660 -12.15173 -11.91365 -11.60294 -11.15932 -10.94583 -10.90070 -10.75838 -10.56834 -10.51980 -10.29931 -10.15563 -10.09758 -9.97918 -9.53519 -9.16270 -8.83389 -8.69356 -8.36373 -7.08539 -5.99059 -4.03407 3.30863 3.38975 3.43297 3.93466 4.42389 4.52230 4.71670 5.00773 5.09169 5.22544 5.32546 5.41093 5.42817 5.52486 5.63087 5.69808 5.71297 5.76156 5.77816 5.82463 5.91826 6.02206 6.17410 6.23636 6.24958 6.38820 6.40779 6.47357 6.59773 6.70100 6.81789 6.87372 6.91614 6.99934 7.15835 7.32634 7.61240 7.77537 7.87023 8.25372 8.38116 8.66057 9.04094 9.61750 11.07379 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019195 B = 0.006068 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.373582 B = 4613.304413 C = 5731.568000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.489 5.489 3 C 0.003 3.997 4 C -0.109 4.109 5 C -0.116 4.116 6 C 0.073 3.927 7 N -0.535 5.535 8 C 0.053 3.947 9 C -0.112 4.112 10 C -0.123 4.123 11 C -0.105 4.105 12 C 0.220 3.780 13 H -0.003 1.003 14 C -0.503 4.503 15 H 0.063 0.937 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.894 3.106 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.284 1.284 22 C 0.005 3.995 23 H 0.033 0.967 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.023 0.977 32 H 0.078 0.922 33 H 0.015 0.985 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.043 0.957 38 H 0.046 0.954 39 H 0.042 0.958 40 H 0.093 0.907 41 H 0.259 0.741 42 H 0.068 0.932 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.331 2.650 7.623 13.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.211 5.211 3 C -0.126 4.126 4 C -0.128 4.128 5 C -0.154 4.154 6 C -0.055 4.055 7 N -0.260 5.260 8 C -0.076 4.076 9 C -0.150 4.150 10 C -0.160 4.160 11 C -0.143 4.143 12 C 0.114 3.886 13 H 0.014 0.986 14 C -0.542 4.542 15 H 0.081 0.919 16 C -0.142 4.142 17 N -0.532 5.532 18 Si 0.722 3.278 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.124 4.124 23 H 0.051 0.949 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.097 0.903 33 H 0.034 0.966 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.111 0.889 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.850 2.517 8.185 13.823 hybrid contribution 0.000 -0.573 -0.710 0.912 sum -10.851 1.944 7.475 13.319 Atomic orbital electron populations 1.22841 0.90201 1.02128 1.00776 1.68494 1.08598 1.18831 1.25151 1.23999 0.97271 0.91118 1.00182 1.22965 0.98118 0.95857 0.95904 1.21838 0.99401 0.98634 0.95514 1.21866 0.97621 0.93388 0.92599 1.62108 1.12744 1.39780 1.11376 1.22074 0.92595 0.96657 0.96228 1.21561 0.98462 0.98363 0.96567 1.21699 0.98572 0.98951 0.96808 1.21639 0.94746 0.98151 0.99800 1.19216 0.91163 0.90698 0.87549 0.98587 1.21229 1.01499 1.36611 0.94821 0.91854 1.24931 0.98397 0.96007 0.94835 1.69896 1.34738 1.44018 1.04594 0.86504 0.83409 0.78325 0.79559 1.19732 1.21196 1.21066 1.24120 0.97129 1.00801 0.90337 0.94870 0.91402 0.91649 0.89610 0.91452 0.88146 0.91176 0.92360 0.95888 0.90344 0.96637 0.92058 0.93510 0.91939 0.93816 0.93512 0.93897 0.88914 0.93091 0.91343 0.89389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 9.65 60.07 0.58 0.48 16 2 N -0.49 -6.03 6.55 -246.39 -1.62 -7.64 16 3 C 0.00 0.04 7.55 -2.76 -0.02 0.01 16 4 C -0.11 -1.43 3.82 -89.69 -0.34 -1.77 16 5 C -0.12 -1.70 4.30 -26.73 -0.11 -1.81 16 6 C 0.07 1.40 4.65 -3.82 -0.02 1.38 16 7 N -0.53 -11.39 4.63 -228.07 -1.06 -12.45 16 8 C 0.05 0.97 4.85 -3.84 -0.02 0.95 16 9 C -0.11 -1.97 6.09 -26.61 -0.16 -2.13 16 10 C -0.12 -2.44 6.01 -26.56 -0.16 -2.60 16 11 C -0.10 -2.52 5.13 -26.65 -0.14 -2.66 16 12 C 0.22 5.51 1.79 -68.87 -0.12 5.39 16 13 H 0.00 -0.10 8.14 -51.93 -0.42 -0.52 16 14 C -0.50 -13.64 8.00 -34.44 -0.28 -13.92 16 15 H 0.06 1.72 6.33 -52.49 -0.33 1.38 16 16 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 17 N -0.89 -25.32 11.33 55.43 0.63 -24.69 16 18 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 C 0.00 0.06 7.54 -2.63 -0.02 0.04 16 23 H 0.03 0.32 7.63 -51.93 -0.40 -0.07 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.07 0.72 7.88 -51.92 -0.41 0.31 16 28 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.83 5.94 -51.93 -0.31 0.52 16 31 H 0.02 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.08 1.61 6.55 -51.93 -0.34 1.27 16 33 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.98 5.81 -51.93 -0.30 0.68 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 1.11 8.14 -51.92 -0.42 0.68 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.09 2.47 6.09 -51.93 -0.32 2.16 16 41 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.07 0.85 7.40 -51.93 -0.38 0.46 16 43 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 323.95 15.07 4.88 4.88 Total: -1.00 -28.11 323.95 -10.93 -39.04 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -7.84 Total: -0.28 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -0.91 Total: -15.10 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: -2.04 Total: -44.78 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.11 -10.93 -39.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260387250.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.759 kcal (2) G-P(sol) polarization free energy of solvation -28.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds