Wall clock time and date at job start Mon Mar 30 2020 03:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47962 * 110.99826 * 2 1 4 4 C 1.53931 * 86.18002 * 222.41744 * 3 2 1 5 5 C 1.53000 * 113.73425 * 138.07981 * 4 3 2 6 6 C 1.53001 * 109.47334 * 176.89503 * 5 4 3 7 7 N 1.46902 * 109.47122 * 179.97438 * 6 5 4 8 8 C 1.46846 * 111.00121 * 314.21275 * 7 6 5 9 9 C 1.53030 * 109.52435 * 174.16395 * 8 7 6 10 10 C 1.53203 * 109.30370 * 59.17688 * 9 8 7 11 11 C 1.53123 * 109.11533 * 302.37368 * 10 9 8 12 12 C 1.46856 * 110.99619 * 190.00392 * 7 6 5 13 13 H 1.09000 * 109.46462 * 65.82793 * 12 7 6 14 14 C 1.50695 * 109.45128 * 305.84652 * 12 7 6 15 15 H 1.07997 * 120.00678 * 359.95743 * 14 12 7 16 16 C 1.37877 * 119.99541 * 179.97438 * 14 12 7 17 17 N 1.31516 * 120.00512 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99873 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47051 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47146 * 119.99970 * 18 16 14 21 21 H 1.48497 * 109.47267 * 240.00230 * 18 16 14 22 22 C 1.48193 * 111.07132 * 260.56878 * 2 1 3 23 23 H 1.09004 * 109.46932 * 60.00093 * 1 2 3 24 24 H 1.09004 * 109.46927 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47555 * 300.00144 * 1 2 3 26 26 H 1.08996 * 113.76137 * 108.09690 * 3 2 1 27 27 H 1.09009 * 113.85656 * 336.74636 * 3 2 1 28 28 H 1.09003 * 113.73418 * 269.25285 * 4 3 2 29 29 H 1.09006 * 109.47206 * 56.89814 * 5 4 3 30 30 H 1.09000 * 109.47535 * 296.89795 * 5 4 3 31 31 H 1.09004 * 109.46698 * 60.00561 * 6 5 4 32 32 H 1.08996 * 109.47607 * 300.00117 * 6 5 4 33 33 H 1.09004 * 109.46012 * 294.17710 * 8 7 6 34 34 H 1.08997 * 109.46257 * 54.15030 * 8 7 6 35 35 H 1.08997 * 109.50569 * 179.12357 * 9 8 7 36 36 H 1.09007 * 109.50504 * 299.19535 * 9 8 7 37 37 H 1.08994 * 109.57907 * 182.46159 * 10 9 8 38 38 H 1.08997 * 109.51203 * 62.24423 * 10 9 8 39 39 H 1.09002 * 109.50371 * 297.67165 * 11 10 9 40 40 H 1.09003 * 109.50070 * 177.59325 * 11 10 9 41 41 H 0.96995 * 120.00556 * 179.97438 * 17 16 14 42 42 H 1.08994 * 113.75801 * 23.23797 * 22 2 1 43 43 H 1.08996 * 113.81954 * 251.80426 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3814 0.0000 4 6 3.0210 0.8793 -1.0360 5 6 3.2610 1.8570 -2.1881 6 6 4.3439 1.2988 -3.1137 7 7 4.5738 2.2373 -4.2202 8 6 3.3023 2.7025 -4.7885 9 6 3.5756 3.7839 -5.8362 10 6 4.4682 3.2063 -6.9393 11 6 5.7647 2.6848 -6.3135 12 6 5.4279 1.6351 -5.2520 13 1 4.9016 0.8025 -5.7188 14 6 6.7008 1.1338 -4.6200 15 1 6.8594 1.2515 -3.5583 16 6 7.6631 0.5251 -5.3975 17 7 7.4704 0.3824 -6.6906 18 14 9.2407 -0.0971 -4.6140 19 1 9.2127 0.1820 -3.1558 20 1 9.3594 -1.5608 -4.8351 21 1 10.4037 0.5923 -5.2282 22 6 2.0018 -0.2266 -1.3641 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 2.4459 1.6803 0.9482 27 1 1.3021 2.1212 -0.3936 28 1 3.9458 0.5069 -0.5953 29 1 3.5852 2.8177 -1.7878 30 1 2.3365 1.9908 -2.7498 31 1 4.0197 0.3381 -3.5140 32 1 5.2684 1.1650 -2.5521 33 1 2.7859 1.8648 -5.2574 34 1 2.6791 3.1149 -3.9950 35 1 2.6326 4.1180 -6.2690 36 1 4.0790 4.6282 -5.3651 37 1 4.7016 3.9849 -7.6654 38 1 3.9486 2.3873 -7.4365 39 1 6.3032 3.5115 -5.8499 40 1 6.3864 2.2337 -7.0870 41 1 8.1476 -0.0455 -7.2376 42 1 1.3043 0.0405 -2.1580 43 1 2.4506 -1.2100 -1.5037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260387250.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:47 Heat of formation + Delta-G solvation = 8.865674 kcal Electronic energy + Delta-G solvation = -19491.143727 eV Core-core repulsion = 16763.913867 eV Total energy + Delta-G solvation = -2727.229860 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.97127 -39.71605 -35.40770 -34.82190 -32.54158 -31.30498 -29.28131 -27.18909 -27.05337 -25.65496 -23.89150 -22.87178 -21.63217 -20.51100 -20.30390 -18.46670 -17.09049 -16.87227 -16.31920 -16.03989 -15.81376 -15.39664 -15.26907 -14.93224 -14.36525 -14.30467 -13.91392 -13.69914 -13.63427 -13.45693 -12.91564 -12.75131 -12.58067 -12.36259 -12.20570 -12.12044 -11.97769 -11.84311 -11.77380 -11.49671 -11.41594 -11.22125 -10.79660 -10.66301 -10.39854 -9.75844 -8.85470 -8.09978 -6.21746 1.39668 1.41666 1.53225 2.42140 3.00733 3.16090 3.32490 3.58320 3.81190 4.11066 4.16902 4.20921 4.29284 4.36543 4.42567 4.51688 4.54218 4.58349 4.62225 4.66811 4.75596 4.83367 4.85870 4.89664 4.93649 4.97268 5.07414 5.12347 5.18747 5.27332 5.31300 5.35665 5.37898 5.45144 5.50042 5.66488 5.79108 5.83891 6.10724 6.31253 6.47411 6.83168 6.94987 7.47571 8.95412 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019195 B = 0.006068 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.373582 B = 4613.304413 C = 5731.568000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.504 5.504 3 C 0.014 3.986 4 C -0.112 4.112 5 C -0.098 4.098 6 C 0.077 3.923 7 N -0.542 5.542 8 C 0.050 3.950 9 C -0.106 4.106 10 C -0.118 4.118 11 C -0.100 4.100 12 C 0.226 3.774 13 H -0.046 1.046 14 C -0.519 4.519 15 H 0.057 0.943 16 C 0.012 3.988 17 N -0.920 5.920 18 Si 0.956 3.044 19 H -0.268 1.268 20 H -0.282 1.282 21 H -0.280 1.280 22 C 0.004 3.996 23 H 0.039 0.961 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.002 0.998 32 H 0.055 0.945 33 H 0.007 0.993 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.038 0.962 39 H 0.032 0.968 40 H 0.060 0.940 41 H 0.260 0.740 42 H 0.074 0.926 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.778 3.921 8.828 16.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.226 5.226 3 C -0.115 4.115 4 C -0.131 4.131 5 C -0.135 4.135 6 C -0.051 4.051 7 N -0.266 5.266 8 C -0.078 4.078 9 C -0.144 4.144 10 C -0.156 4.156 11 C -0.139 4.139 12 C 0.119 3.881 13 H -0.029 1.029 14 C -0.557 4.557 15 H 0.075 0.925 16 C -0.187 4.187 17 N -0.560 5.560 18 Si 0.782 3.218 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.205 1.205 22 C -0.125 4.125 23 H 0.058 0.942 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.112 0.888 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.021 0.979 32 H 0.074 0.926 33 H 0.025 0.975 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.314 3.797 9.403 15.952 hybrid contribution 0.431 -0.996 -1.085 1.535 sum -11.883 2.800 8.318 14.773 Atomic orbital electron populations 1.22888 0.88752 1.02673 1.01682 1.68473 1.10179 1.19469 1.24526 1.23992 0.96523 0.91072 0.99866 1.22908 0.98286 0.95958 0.95992 1.21670 0.97928 0.98920 0.95031 1.21827 0.98198 0.92622 0.92473 1.62062 1.14309 1.39487 1.10778 1.22242 0.91331 0.96705 0.97524 1.21561 0.99639 0.97791 0.95398 1.21631 0.96731 0.99291 0.97945 1.21454 0.96516 0.97197 0.98706 1.18985 0.90785 0.89842 0.88529 1.02888 1.21512 1.02636 1.36920 0.94658 0.92460 1.25694 1.01444 0.96243 0.95298 1.70032 1.35686 1.44572 1.05708 0.85533 0.79653 0.77757 0.78867 1.19181 1.20810 1.20534 1.24101 0.97182 1.00139 0.91075 0.94243 0.91158 0.90381 0.88766 0.89951 0.89331 0.90536 0.91121 0.97933 0.92614 0.97456 0.88774 0.89758 0.91567 0.91769 0.94319 0.94935 0.92169 0.93062 0.90770 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.20 9.65 127.69 1.23 1.04 16 2 N -0.50 -11.44 6.55 -933.44 -6.12 -17.56 16 3 C 0.01 0.28 7.55 86.41 0.65 0.94 16 4 C -0.11 -2.79 3.82 -10.15 -0.04 -2.83 16 5 C -0.10 -2.70 4.30 30.59 0.13 -2.57 16 6 C 0.08 2.97 4.65 86.30 0.40 3.37 16 7 N -0.54 -23.10 4.63 -875.49 -4.06 -27.16 16 8 C 0.05 1.73 4.85 86.32 0.42 2.15 16 9 C -0.11 -3.45 6.09 30.67 0.19 -3.27 16 10 C -0.12 -4.61 6.01 30.70 0.18 -4.43 16 11 C -0.10 -4.93 5.13 30.65 0.16 -4.77 16 12 C 0.23 11.71 1.79 44.19 0.08 11.79 16 13 H -0.05 -2.74 8.14 -2.39 -0.02 -2.76 16 14 C -0.52 -29.09 8.00 25.60 0.20 -28.89 16 15 H 0.06 3.21 6.33 -2.91 -0.02 3.19 16 16 C 0.01 0.65 5.30 84.65 0.45 1.10 16 17 N -0.92 -53.89 11.33 21.45 0.24 -53.65 16 18 Si 0.96 44.47 29.54 68.60 2.03 46.49 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 C 0.00 0.09 7.54 86.36 0.65 0.74 16 23 H 0.04 0.65 7.63 -2.39 -0.02 0.64 16 24 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 25 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.08 1.45 7.88 -2.38 -0.02 1.43 16 28 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.07 1.80 5.94 -2.39 -0.01 1.78 16 31 H 0.00 0.10 8.08 -2.39 -0.02 0.08 16 32 H 0.06 2.37 6.55 -2.39 -0.02 2.36 16 33 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 34 H 0.09 2.68 5.81 -2.39 -0.01 2.67 16 35 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 37 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.06 3.34 6.09 -2.39 -0.01 3.32 16 41 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 42 H 0.07 1.71 7.40 -2.39 -0.02 1.69 16 43 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -62.36 323.95 -2.25 -64.61 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.95 Total: 12.88 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: 4.71 Total: -25.62 kcal Atomic # 7 Polarization: -88.43 SS G_CDS: -9.93 Total: -98.36 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -62.36 -2.25 -64.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260387250.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.475 kcal (2) G-P(sol) polarization free energy of solvation -62.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds