Wall clock time and date at job start Mon Mar 30 2020 04:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48055 * 110.81271 * 2 1 4 4 C 1.53114 * 108.73428 * 172.31298 * 3 2 1 5 5 C 1.52358 * 109.69551 * 58.32081 * 4 3 2 6 6 H 1.08999 * 101.97428 * 196.97214 * 5 4 3 7 7 C 1.50279 * 112.33331 * 306.74739 * 5 4 3 8 8 H 1.09001 * 108.27527 * 293.27889 * 7 5 4 9 9 C 1.46756 * 110.99686 * 237.13810 * 2 1 3 10 10 N 1.48506 * 113.66410 * 172.98594 * 7 5 4 11 11 C 1.46898 * 111.00655 * 167.29914 * 10 7 5 12 12 C 1.44707 * 111.57086 * 42.92905 * 10 7 5 13 13 C 1.52345 * 110.60886 * 266.47258 * 12 10 7 14 14 C 1.48342 * 113.93022 * 85.02057 * 13 12 10 15 15 C 1.46853 * 112.76828 * 87.05889 * 5 4 3 16 16 H 1.08993 * 108.64854 * 257.32979 * 15 5 4 17 17 C 1.50698 * 109.21166 * 16.01047 * 15 5 4 18 18 H 1.08001 * 120.00549 * 62.84586 * 17 15 5 19 19 C 1.37874 * 119.99929 * 242.84091 * 17 15 5 20 20 N 1.31520 * 119.99848 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 120.00443 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47386 * 60.00103 * 21 19 17 23 23 H 1.48498 * 109.47606 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47046 * 300.00201 * 21 19 17 25 25 H 1.08994 * 109.47364 * 182.86618 * 1 2 3 26 26 H 1.09005 * 109.46684 * 302.86286 * 1 2 3 27 27 H 1.08995 * 109.47079 * 62.86281 * 1 2 3 28 28 H 1.09005 * 109.42418 * 52.68028 * 3 2 1 29 29 H 1.09000 * 109.98944 * 292.28650 * 3 2 1 30 30 H 1.08999 * 109.43679 * 298.25199 * 4 3 2 31 31 H 1.09000 * 109.43339 * 178.38626 * 4 3 2 32 32 H 1.09004 * 109.40908 * 65.94881 * 9 2 1 33 33 H 1.09006 * 109.40789 * 306.11160 * 9 2 1 34 34 H 1.09005 * 109.46781 * 59.99550 * 11 10 7 35 35 H 1.08992 * 109.47760 * 179.97438 * 11 10 7 36 36 H 1.09005 * 109.47320 * 300.00020 * 11 10 7 37 37 H 1.09000 * 109.24522 * 26.76334 * 12 10 7 38 38 H 1.08998 * 109.24609 * 146.21778 * 12 10 7 39 39 H 1.08999 * 108.59115 * 206.16705 * 13 12 10 40 40 H 1.09004 * 108.59435 * 323.86694 * 13 12 10 41 41 H 1.09008 * 109.58991 * 57.55181 * 14 13 12 42 42 H 1.09000 * 109.59203 * 177.84275 * 14 13 12 43 43 H 0.97006 * 120.00027 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3839 0.0000 4 6 3.5130 1.3330 0.1940 5 6 4.1454 0.5059 -0.9184 6 1 5.1308 0.2886 -0.5064 7 6 3.5201 -0.8548 -1.0441 8 1 3.7573 -1.4243 -0.1455 9 6 1.9949 -0.7434 -1.1509 10 7 3.9981 -1.6240 -2.2212 11 6 3.5932 -3.0330 -2.1293 12 6 5.4307 -1.5059 -2.3878 13 6 5.7673 -0.3697 -3.3452 14 6 5.8356 0.9629 -2.6972 15 6 4.4521 1.3014 -2.1141 16 1 3.6918 1.1027 -2.8693 17 6 4.4163 2.7654 -1.7582 18 1 5.1154 3.1632 -1.0375 19 6 3.4913 3.5970 -2.3529 20 7 2.6397 3.1125 -3.2304 21 14 3.4473 5.4117 -1.9125 22 1 4.7544 6.0336 -2.2446 23 1 2.3696 6.0823 -2.6832 24 1 3.1828 5.5621 -0.4590 25 1 -0.3634 -1.0263 0.0514 26 1 -0.3633 0.5577 0.8633 27 1 -0.3633 0.4687 -0.9145 28 1 1.5413 1.9442 0.8175 29 1 1.7644 1.8703 -0.9478 30 1 3.7405 0.8783 1.1581 31 1 3.9162 2.3454 0.1671 32 1 1.7335 -0.2198 -2.0705 33 1 1.5590 -1.7424 -1.1666 34 1 2.5057 -3.0966 -2.0882 35 1 3.9556 -3.5731 -3.0038 36 1 4.0172 -3.4749 -1.2275 37 1 5.8899 -1.3078 -1.4194 38 1 5.8241 -2.4405 -2.7876 39 1 6.7309 -0.5803 -3.8092 40 1 5.0084 -0.3376 -4.1270 41 1 6.5747 0.9423 -1.8961 42 1 6.1172 1.7141 -3.4350 43 1 1.9886 3.6975 -3.6485 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260404490.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:53 Heat of formation + Delta-G solvation = 16.017483 kcal Electronic energy + Delta-G solvation = -20994.311076 eV Core-core repulsion = 18267.391342 eV Total energy + Delta-G solvation = -2726.919734 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.65932 -36.49188 -35.01791 -32.47281 -31.82624 -29.35041 -27.98203 -26.53981 -24.96776 -23.84725 -23.02571 -21.25540 -20.49648 -19.50784 -17.42287 -16.19737 -15.85451 -14.84430 -14.61017 -14.50260 -14.25981 -13.80122 -13.54334 -13.10566 -12.71956 -12.60324 -12.44338 -12.23081 -11.82494 -11.65617 -11.34784 -11.18569 -10.95498 -10.86322 -10.76315 -10.63571 -10.32395 -10.10080 -10.02813 -9.72932 -9.49615 -9.04488 -8.61680 -8.45329 -8.35263 -7.72478 -7.55331 -5.93203 -3.91977 3.32488 3.38294 3.40940 4.24256 4.46845 4.83166 5.35684 5.37377 5.45398 5.61660 5.67226 5.69363 5.79602 5.88394 5.95658 6.02488 6.04322 6.14041 6.20684 6.21936 6.26560 6.30702 6.46602 6.57518 6.61940 6.69688 6.75075 6.82741 6.95932 7.09375 7.19114 7.27260 7.41506 7.44127 7.57577 7.76822 7.80210 7.88495 7.90422 8.04076 8.16331 8.57018 9.18362 9.64887 11.14713 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018712 B = 0.010750 C = 0.007766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.043021 B = 2604.104843 C = 3604.548331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.544 5.544 3 C 0.052 3.948 4 C -0.093 4.093 5 C -0.055 4.055 6 H 0.013 0.987 7 C 0.113 3.887 8 H 0.029 0.971 9 C 0.066 3.934 10 N -0.537 5.537 11 C 0.029 3.971 12 C 0.067 3.933 13 C -0.111 4.111 14 C -0.103 4.103 15 C 0.036 3.964 16 H 0.075 0.925 17 C -0.499 4.499 18 H 0.050 0.950 19 C 0.068 3.932 20 N -0.890 5.890 21 Si 0.876 3.124 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.277 1.277 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.023 0.977 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.030 0.970 31 H 0.102 0.898 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.017 0.983 37 H 0.035 0.965 38 H 0.053 0.947 39 H 0.038 0.962 40 H 0.066 0.934 41 H 0.032 0.968 42 H 0.055 0.945 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.063 -8.317 3.298 8.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.269 5.269 3 C -0.075 4.075 4 C -0.131 4.131 5 C -0.074 4.074 6 H 0.032 0.968 7 C 0.006 3.994 8 H 0.047 0.953 9 C -0.063 4.063 10 N -0.261 5.261 11 C -0.119 4.119 12 C -0.061 4.061 13 C -0.150 4.150 14 C -0.140 4.140 15 C 0.017 3.983 16 H 0.093 0.907 17 C -0.537 4.537 18 H 0.068 0.932 19 C -0.133 4.133 20 N -0.528 5.528 21 Si 0.704 3.296 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.203 1.203 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.120 0.880 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.035 0.965 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.085 0.915 41 H 0.050 0.950 42 H 0.074 0.926 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.254 -8.309 3.209 8.911 hybrid contribution 0.013 1.001 0.230 1.028 sum -0.241 -7.308 3.439 8.080 Atomic orbital electron populations 1.22276 0.88878 1.00828 1.00196 1.62729 1.06493 1.15740 1.41893 1.22406 0.96448 0.87302 1.01360 1.21624 0.93873 1.02541 0.95062 1.19327 0.96829 0.92230 0.99062 0.96802 1.21285 0.94188 0.94943 0.89025 0.95326 1.22047 0.94769 0.97012 0.92468 1.61414 1.13589 1.09452 1.41676 1.22414 1.01098 0.88939 0.99469 1.21492 0.87607 0.98148 0.98853 1.20716 0.99605 0.95699 0.98939 1.21069 0.99795 0.94302 0.98874 1.17736 0.93206 0.93099 0.94272 0.90666 1.20941 1.16118 0.93355 1.23326 0.93220 1.24847 0.95782 0.97563 0.95085 1.69902 1.19833 1.34956 1.28125 0.86915 0.77592 0.86509 0.78555 1.20412 1.21490 1.20254 0.92457 0.92110 0.95792 0.93089 0.91388 0.95120 0.88004 0.93185 0.92683 0.91691 0.91956 0.96475 0.94691 0.92894 0.94324 0.91538 0.94975 0.92596 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.58 60.07 0.58 1.01 16 2 N -0.54 -10.26 4.98 -241.76 -1.20 -11.47 16 3 C 0.05 1.08 5.52 -3.13 -0.02 1.06 16 4 C -0.09 -1.98 5.08 -27.00 -0.14 -2.11 16 5 C -0.06 -1.18 1.19 -95.25 -0.11 -1.30 16 6 H 0.01 0.29 5.87 -51.93 -0.30 -0.01 16 7 C 0.11 2.19 1.81 -68.02 -0.12 2.07 16 8 H 0.03 0.56 7.98 -51.93 -0.41 0.14 16 9 C 0.07 1.26 4.69 -3.75 -0.02 1.24 16 10 N -0.54 -9.62 4.32 -237.27 -1.03 -10.65 16 11 C 0.03 0.42 9.13 60.06 0.55 0.97 16 12 C 0.07 1.16 5.21 -5.33 -0.03 1.13 16 13 C -0.11 -2.08 5.29 -29.33 -0.16 -2.24 16 14 C -0.10 -2.20 4.93 -28.52 -0.14 -2.34 16 15 C 0.04 0.84 2.01 -94.24 -0.19 0.65 16 16 H 0.08 2.06 6.67 -51.93 -0.35 1.71 16 17 C -0.50 -12.82 5.58 -34.44 -0.19 -13.01 16 18 H 0.05 1.28 7.30 -52.49 -0.38 0.90 16 19 C 0.07 1.81 5.10 -17.82 -0.09 1.71 16 20 N -0.89 -24.71 12.55 55.43 0.70 -24.01 16 21 Si 0.88 20.68 29.54 -169.99 -5.02 15.66 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 29 H 0.07 1.65 7.72 -51.93 -0.40 1.25 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.10 2.33 5.35 -51.93 -0.28 2.05 16 32 H 0.05 1.12 8.12 -51.93 -0.42 0.70 16 33 H 0.05 0.95 6.49 -51.93 -0.34 0.61 16 34 H 0.06 0.90 6.48 -51.93 -0.34 0.57 16 35 H 0.06 0.80 7.93 -51.93 -0.41 0.39 16 36 H 0.02 0.23 8.09 -51.93 -0.42 -0.19 16 37 H 0.03 0.62 6.54 -51.93 -0.34 0.28 16 38 H 0.05 0.78 7.49 -51.93 -0.39 0.39 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 1.36 7.99 -51.93 -0.42 0.94 16 41 H 0.03 0.66 7.70 -51.92 -0.40 0.26 16 42 H 0.06 1.26 8.07 -51.93 -0.42 0.84 16 43 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 310.69 15.07 4.68 4.68 Total: -1.00 -26.72 310.69 -9.64 -36.36 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -7.68 Total: 0.57 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -0.08 Total: -11.15 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: -1.53 Total: -46.13 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -26.72 -9.64 -36.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260404490.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.376 kcal (2) G-P(sol) polarization free energy of solvation -26.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds