Wall clock time and date at job start Mon Mar 30 2020 04:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48055 * 110.81271 * 2 1 4 4 C 1.53114 * 108.73428 * 172.31298 * 3 2 1 5 5 C 1.52358 * 109.69551 * 58.32081 * 4 3 2 6 6 H 1.08999 * 101.97428 * 196.97214 * 5 4 3 7 7 C 1.50279 * 112.33331 * 306.74739 * 5 4 3 8 8 H 1.09001 * 108.27527 * 293.27889 * 7 5 4 9 9 C 1.46756 * 110.99686 * 237.13810 * 2 1 3 10 10 N 1.48506 * 113.66410 * 172.98594 * 7 5 4 11 11 C 1.46898 * 111.00655 * 167.29914 * 10 7 5 12 12 C 1.44707 * 111.57086 * 42.92905 * 10 7 5 13 13 C 1.52345 * 110.60886 * 266.47258 * 12 10 7 14 14 C 1.48342 * 113.93022 * 85.02057 * 13 12 10 15 15 C 1.46853 * 112.76828 * 87.05889 * 5 4 3 16 16 H 1.08993 * 108.64854 * 257.32979 * 15 5 4 17 17 C 1.50698 * 109.21166 * 16.01047 * 15 5 4 18 18 H 1.08001 * 120.00549 * 62.84586 * 17 15 5 19 19 C 1.37874 * 119.99929 * 242.84091 * 17 15 5 20 20 N 1.31520 * 119.99848 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 120.00443 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47386 * 60.00103 * 21 19 17 23 23 H 1.48498 * 109.47606 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47046 * 300.00201 * 21 19 17 25 25 H 1.08994 * 109.47364 * 182.86618 * 1 2 3 26 26 H 1.09005 * 109.46684 * 302.86286 * 1 2 3 27 27 H 1.08995 * 109.47079 * 62.86281 * 1 2 3 28 28 H 1.09005 * 109.42418 * 52.68028 * 3 2 1 29 29 H 1.09000 * 109.98944 * 292.28650 * 3 2 1 30 30 H 1.08999 * 109.43679 * 298.25199 * 4 3 2 31 31 H 1.09000 * 109.43339 * 178.38626 * 4 3 2 32 32 H 1.09004 * 109.40908 * 65.94881 * 9 2 1 33 33 H 1.09006 * 109.40789 * 306.11160 * 9 2 1 34 34 H 1.09005 * 109.46781 * 59.99550 * 11 10 7 35 35 H 1.08992 * 109.47760 * 179.97438 * 11 10 7 36 36 H 1.09005 * 109.47320 * 300.00020 * 11 10 7 37 37 H 1.09000 * 109.24522 * 26.76334 * 12 10 7 38 38 H 1.08998 * 109.24609 * 146.21778 * 12 10 7 39 39 H 1.08999 * 108.59115 * 206.16705 * 13 12 10 40 40 H 1.09004 * 108.59435 * 323.86694 * 13 12 10 41 41 H 1.09008 * 109.58991 * 57.55181 * 14 13 12 42 42 H 1.09000 * 109.59203 * 177.84275 * 14 13 12 43 43 H 0.97006 * 120.00027 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3839 0.0000 4 6 3.5130 1.3330 0.1940 5 6 4.1454 0.5059 -0.9184 6 1 5.1308 0.2886 -0.5064 7 6 3.5201 -0.8548 -1.0441 8 1 3.7573 -1.4243 -0.1455 9 6 1.9949 -0.7434 -1.1509 10 7 3.9981 -1.6240 -2.2212 11 6 3.5932 -3.0330 -2.1293 12 6 5.4307 -1.5059 -2.3878 13 6 5.7673 -0.3697 -3.3452 14 6 5.8356 0.9629 -2.6972 15 6 4.4521 1.3014 -2.1141 16 1 3.6918 1.1027 -2.8693 17 6 4.4163 2.7654 -1.7582 18 1 5.1154 3.1632 -1.0375 19 6 3.4913 3.5970 -2.3529 20 7 2.6397 3.1125 -3.2304 21 14 3.4473 5.4117 -1.9125 22 1 4.7544 6.0336 -2.2446 23 1 2.3696 6.0823 -2.6832 24 1 3.1828 5.5621 -0.4590 25 1 -0.3634 -1.0263 0.0514 26 1 -0.3633 0.5577 0.8633 27 1 -0.3633 0.4687 -0.9145 28 1 1.5413 1.9442 0.8175 29 1 1.7644 1.8703 -0.9478 30 1 3.7405 0.8783 1.1581 31 1 3.9162 2.3454 0.1671 32 1 1.7335 -0.2198 -2.0705 33 1 1.5590 -1.7424 -1.1666 34 1 2.5057 -3.0966 -2.0882 35 1 3.9556 -3.5731 -3.0038 36 1 4.0172 -3.4749 -1.2275 37 1 5.8899 -1.3078 -1.4194 38 1 5.8241 -2.4405 -2.7876 39 1 6.7309 -0.5803 -3.8092 40 1 5.0084 -0.3376 -4.1270 41 1 6.5747 0.9423 -1.8961 42 1 6.1172 1.7141 -3.4350 43 1 1.9886 3.6975 -3.6485 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260404490.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:53 Heat of formation + Delta-G solvation = -0.962525 kcal Electronic energy + Delta-G solvation = -20995.047385 eV Core-core repulsion = 18267.391342 eV Total energy + Delta-G solvation = -2727.656042 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.24541 -37.98222 -36.68073 -34.09577 -33.69698 -30.95423 -29.58479 -27.95514 -26.72714 -25.35809 -24.63697 -22.86302 -22.15189 -21.04040 -19.19406 -18.10261 -17.41233 -16.46778 -16.25778 -16.07340 -15.85244 -15.32950 -15.08211 -14.50861 -14.35917 -14.26496 -13.95278 -13.84647 -13.27171 -13.21596 -12.88075 -12.78639 -12.70418 -12.55852 -12.42673 -12.13517 -12.06536 -11.84610 -11.64096 -11.30878 -11.17779 -10.80823 -10.54667 -10.36741 -10.21493 -9.23909 -9.00564 -7.98382 -6.01096 1.41556 1.43350 1.48656 2.48188 2.84590 3.31529 3.38068 3.81247 4.08258 4.16000 4.27182 4.32097 4.42259 4.50386 4.51895 4.61375 4.66103 4.69697 4.73569 4.80540 4.83011 4.93608 4.97473 5.02398 5.05870 5.10929 5.14372 5.20727 5.29858 5.36160 5.49396 5.63569 5.68117 5.70305 5.76698 6.05429 6.13608 6.24147 6.25593 6.39406 6.46160 6.59321 7.15221 7.57577 9.08799 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018712 B = 0.010750 C = 0.007766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.043021 B = 2604.104843 C = 3604.548331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.540 5.540 3 C 0.059 3.941 4 C -0.092 4.092 5 C -0.054 4.054 6 H 0.011 0.989 7 C 0.117 3.883 8 H 0.036 0.964 9 C 0.074 3.926 10 N -0.556 5.556 11 C 0.030 3.970 12 C 0.071 3.929 13 C -0.107 4.107 14 C -0.099 4.099 15 C 0.042 3.958 16 H 0.035 0.965 17 C -0.500 4.500 18 H 0.045 0.955 19 C 0.027 3.973 20 N -0.920 5.920 21 Si 0.926 3.074 22 H -0.276 1.276 23 H -0.292 1.292 24 H -0.269 1.269 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.009 0.991 28 H 0.064 0.936 29 H 0.027 0.973 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.009 0.991 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.030 0.970 37 H 0.031 0.969 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.043 0.957 41 H 0.040 0.960 42 H 0.034 0.966 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.263 -10.050 4.513 11.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.265 5.265 3 C -0.069 4.069 4 C -0.130 4.130 5 C -0.073 4.073 6 H 0.029 0.971 7 C 0.009 3.991 8 H 0.054 0.946 9 C -0.054 4.054 10 N -0.281 5.281 11 C -0.118 4.118 12 C -0.058 4.058 13 C -0.145 4.145 14 C -0.137 4.137 15 C 0.023 3.977 16 H 0.053 0.947 17 C -0.538 4.538 18 H 0.064 0.936 19 C -0.171 4.171 20 N -0.560 5.560 21 Si 0.753 3.247 22 H -0.201 1.201 23 H -0.218 1.218 24 H -0.194 1.194 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.028 0.972 28 H 0.082 0.918 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.028 0.972 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.079 -10.049 4.436 10.985 hybrid contribution -0.079 1.526 -0.155 1.536 sum -0.001 -8.523 4.280 9.538 Atomic orbital electron populations 1.22393 0.86965 1.02690 1.00192 1.62784 1.08265 1.14118 1.41308 1.22228 0.96467 0.88503 0.99667 1.21536 0.94146 1.01450 0.95870 1.19241 0.97057 0.93268 0.97750 0.97060 1.21145 0.94000 0.93833 0.90084 0.94564 1.21980 0.95095 0.97621 0.90735 1.61365 1.14153 1.11574 1.41049 1.22486 1.01467 0.86841 1.00996 1.21472 0.87349 0.98693 0.98243 1.20635 1.00365 0.94856 0.98631 1.20968 0.98469 0.95662 0.98633 1.17651 0.93297 0.92638 0.94150 0.94703 1.21193 1.15445 0.94648 1.22532 0.93640 1.25389 0.95705 1.00782 0.95234 1.70049 1.20632 1.35829 1.29468 0.86100 0.77337 0.82642 0.78572 1.20148 1.21823 1.19388 0.89831 0.90495 0.97247 0.91757 0.95437 0.93379 0.90174 0.97245 0.90170 0.91389 0.90079 0.95148 0.95042 0.89669 0.91625 0.93836 0.94145 0.94705 0.93709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 9.58 127.69 1.22 2.01 16 2 N -0.54 -19.73 4.98 -918.79 -4.58 -24.31 16 3 C 0.06 2.46 5.52 86.12 0.48 2.93 16 4 C -0.09 -3.89 5.08 30.42 0.15 -3.74 16 5 C -0.05 -2.31 1.19 -13.79 -0.02 -2.33 16 6 H 0.01 0.47 5.87 -2.39 -0.01 0.45 16 7 C 0.12 4.40 1.81 43.83 0.08 4.48 16 8 H 0.04 1.32 7.98 -2.39 -0.02 1.30 16 9 C 0.07 2.80 4.69 86.43 0.41 3.20 16 10 N -0.56 -18.97 4.32 -904.58 -3.91 -22.88 16 11 C 0.03 0.76 9.13 127.69 1.17 1.92 16 12 C 0.07 2.26 5.21 86.50 0.45 2.71 16 13 C -0.11 -3.89 5.29 28.91 0.15 -3.74 16 14 C -0.10 -4.31 4.93 29.43 0.14 -4.16 16 15 C 0.04 2.02 2.01 -13.14 -0.03 2.00 16 16 H 0.03 1.99 6.67 -2.39 -0.02 1.97 16 17 C -0.50 -26.37 5.58 25.60 0.14 -26.22 16 18 H 0.05 2.40 7.30 -2.91 -0.02 2.37 16 19 C 0.03 1.46 5.10 84.65 0.43 1.89 16 20 N -0.92 -53.25 12.55 21.45 0.27 -52.98 16 21 Si 0.93 43.29 29.54 68.60 2.03 45.31 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 23 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 25 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.08 2.08 8.10 -2.38 -0.02 2.06 16 27 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.06 2.45 8.08 -2.38 -0.02 2.44 16 29 H 0.03 1.38 7.72 -2.39 -0.02 1.36 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.83 16 31 H 0.08 3.71 5.35 -2.39 -0.01 3.70 16 32 H 0.01 0.42 8.12 -2.39 -0.02 0.40 16 33 H 0.08 2.59 6.49 -2.38 -0.02 2.57 16 34 H 0.07 1.69 6.48 -2.38 -0.02 1.67 16 35 H 0.08 1.78 7.93 -2.39 -0.02 1.76 16 36 H 0.03 0.71 8.09 -2.38 -0.02 0.69 16 37 H 0.03 1.04 6.54 -2.39 -0.02 1.02 16 38 H 0.08 2.19 7.49 -2.39 -0.02 2.17 16 39 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.04 1.78 7.99 -2.38 -0.02 1.76 16 41 H 0.04 1.65 7.70 -2.38 -0.02 1.63 16 42 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 43 H 0.25 14.31 8.31 -92.70 -0.77 13.54 16 Total: -1.00 -59.19 310.69 -0.45 -59.64 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.95 Total: 14.25 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: 4.78 Total: -19.04 kcal Atomic # 7 Polarization: -91.95 SS G_CDS: -8.22 Total: -100.17 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -59.19 -0.45 -59.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260404490.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.680 kcal (2) G-P(sol) polarization free energy of solvation -59.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds