Wall clock time and date at job start Mon Mar 30 2020 04:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46764 * 111.00022 * 2 1 4 4 C 1.53260 * 109.93810 * 185.83083 * 3 2 1 5 5 C 1.53020 * 108.63215 * 301.44947 * 4 3 2 6 6 H 1.08996 * 109.68374 * 295.86336 * 5 4 3 7 7 C 1.50932 * 109.72873 * 57.22361 * 5 4 3 8 8 H 1.08999 * 105.49818 * 54.38560 * 7 5 4 9 9 C 1.47091 * 111.00062 * 124.74909 * 2 1 3 10 10 N 1.44354 * 117.20513 * 171.52870 * 7 5 4 11 11 C 1.46901 * 111.00322 * 153.21351 * 10 7 5 12 12 C 1.46900 * 113.37623 * 278.95464 * 10 7 5 13 13 C 1.54906 * 108.81299 * 94.15040 * 12 10 7 14 14 C 1.52570 * 109.88120 * 330.32389 * 13 12 10 15 15 C 1.54489 * 109.73162 * 175.31040 * 5 4 3 16 16 H 1.09003 * 110.33078 * 287.60653 * 15 5 4 17 17 C 1.50695 * 110.33550 * 49.88450 * 15 5 4 18 18 H 1.08006 * 119.99785 * 355.54558 * 17 15 5 19 19 C 1.37879 * 120.00410 * 175.55072 * 17 15 5 20 20 N 1.31517 * 119.99622 * 0.02562 * 19 17 15 21 21 Si 1.86792 * 120.00043 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46970 * 90.00082 * 21 19 17 23 23 H 1.48502 * 109.47050 * 209.99906 * 21 19 17 24 24 H 1.48500 * 109.47378 * 330.00188 * 21 19 17 25 25 H 1.09005 * 109.46924 * 56.04434 * 1 2 3 26 26 H 1.08993 * 109.47294 * 176.04697 * 1 2 3 27 27 H 1.09003 * 109.46883 * 296.05039 * 1 2 3 28 28 H 1.08996 * 109.39590 * 65.68549 * 3 2 1 29 29 H 1.09005 * 109.31522 * 305.92194 * 3 2 1 30 30 H 1.09004 * 109.60700 * 181.70741 * 4 3 2 31 31 H 1.09002 * 109.60924 * 61.19838 * 4 3 2 32 32 H 1.09008 * 109.55896 * 294.97521 * 9 2 1 33 33 H 1.08993 * 109.55960 * 55.29727 * 9 2 1 34 34 H 1.09002 * 109.47401 * 183.10071 * 11 10 7 35 35 H 1.09001 * 109.46874 * 63.10084 * 11 10 7 36 36 H 1.09004 * 109.46970 * 303.10217 * 11 10 7 37 37 H 1.09002 * 109.58350 * 213.95179 * 12 10 7 38 38 H 1.08997 * 109.58193 * 334.34812 * 12 10 7 39 39 H 1.09004 * 109.40282 * 90.44660 * 13 12 10 40 40 H 1.09001 * 109.40306 * 210.28260 * 13 12 10 41 41 H 1.08999 * 109.71506 * 62.37253 * 14 13 12 42 42 H 1.08997 * 109.71689 * 183.00849 * 14 13 12 43 43 H 0.96998 * 119.99688 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9949 1.3702 0.0000 4 6 3.5203 1.3444 -0.1464 5 6 4.1090 0.5352 1.0113 6 1 3.8996 1.0389 1.9550 7 6 3.5172 -0.8532 1.0152 8 1 3.6972 -1.2493 0.0158 9 6 1.9961 -0.7827 1.1283 10 7 4.0955 -1.8146 1.9236 11 6 3.1135 -2.8403 2.3000 12 6 5.3292 -2.4285 1.4147 13 6 6.5431 -1.6320 1.9545 14 6 6.1522 -0.1731 2.1698 15 6 5.6360 0.3931 0.8250 16 1 5.8555 -0.3003 0.0130 17 6 6.2575 1.7381 0.5500 18 1 5.6300 2.6099 0.4371 19 6 7.6270 1.8557 0.4424 20 7 8.3909 0.7940 0.5793 21 14 8.3972 3.5228 0.1009 22 1 8.6887 4.2062 1.3867 23 1 9.6597 3.3385 -0.6590 24 1 7.4557 4.3492 -0.6965 25 1 -0.3633 0.5740 -0.8525 26 1 -0.3633 -1.0251 -0.0708 27 1 -0.3633 0.4513 0.9233 28 1 1.7295 1.8598 0.9369 29 1 1.5607 1.9230 -0.8331 30 1 3.9080 2.3627 -0.1153 31 1 3.7891 0.8767 -1.0936 32 1 1.7220 -0.3004 2.0667 33 1 1.5810 -1.7901 1.0991 34 1 3.5583 -3.5198 3.0270 35 1 2.8156 -3.4006 1.4137 36 1 2.2379 -2.3614 2.7384 37 1 5.3901 -3.4623 1.7548 38 1 5.3289 -2.4000 0.3251 39 1 6.8672 -2.0636 2.9016 40 1 7.3598 -1.6843 1.2345 41 1 5.3653 -0.1103 2.9214 42 1 7.0217 0.3960 2.4987 43 1 9.3544 0.8768 0.5040 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260404512.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:56 Heat of formation + Delta-G solvation = 16.514802 kcal Electronic energy + Delta-G solvation = -20641.472868 eV Core-core repulsion = 17914.574700 eV Total energy + Delta-G solvation = -2726.898168 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.75983 -36.70579 -34.70715 -32.36711 -31.64383 -29.54634 -27.79783 -26.49010 -24.93952 -24.34160 -22.87509 -21.03232 -20.39828 -19.11205 -18.57515 -16.11852 -15.87686 -15.04767 -14.63032 -14.62293 -14.31242 -13.97112 -13.65319 -13.13747 -12.79422 -12.70444 -12.48880 -12.18063 -11.98530 -11.55171 -11.40058 -11.13545 -10.99325 -10.83466 -10.73004 -10.69482 -10.34261 -10.15834 -10.05824 -9.83484 -9.39524 -9.27062 -8.60290 -8.47082 -8.16965 -8.06429 -7.46912 -5.87452 -3.90504 3.36227 3.43285 3.45706 4.00857 4.52511 4.56268 5.17172 5.27458 5.41308 5.43699 5.49479 5.55423 5.64787 5.67133 5.77241 5.84442 5.86848 5.89478 5.98482 6.08230 6.13451 6.22905 6.30711 6.40367 6.49692 6.61861 6.75659 6.88007 6.94166 7.05266 7.15674 7.23791 7.28730 7.37160 7.59530 7.69503 7.80025 7.86841 7.98224 8.11633 8.24071 8.63458 9.12906 9.72273 11.19727 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021815 B = 0.008493 C = 0.006352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.218274 B = 3296.027986 C = 4407.226093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.545 5.545 3 C 0.052 3.948 4 C -0.098 4.098 5 C -0.071 4.071 6 H 0.056 0.944 7 C 0.106 3.894 8 H 0.026 0.974 9 C 0.055 3.945 10 N -0.541 5.541 11 C 0.030 3.970 12 C 0.069 3.931 13 C -0.101 4.101 14 C -0.086 4.086 15 C 0.063 3.937 16 H 0.024 0.976 17 C -0.509 4.509 18 H 0.056 0.944 19 C 0.062 3.938 20 N -0.885 5.885 21 Si 0.882 3.118 22 H -0.283 1.283 23 H -0.289 1.289 24 H -0.276 1.276 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.020 0.980 28 H 0.027 0.973 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.017 0.983 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.039 0.961 39 H 0.032 0.968 40 H 0.069 0.931 41 H 0.038 0.962 42 H 0.061 0.939 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.693 -4.568 1.202 12.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.270 5.270 3 C -0.075 4.075 4 C -0.137 4.137 5 C -0.090 4.090 6 H 0.074 0.926 7 C -0.002 4.002 8 H 0.044 0.956 9 C -0.073 4.073 10 N -0.265 5.265 11 C -0.118 4.118 12 C -0.059 4.059 13 C -0.139 4.139 14 C -0.124 4.124 15 C 0.045 3.955 16 H 0.042 0.958 17 C -0.547 4.547 18 H 0.074 0.926 19 C -0.139 4.139 20 N -0.524 5.524 21 Si 0.711 3.289 22 H -0.210 1.210 23 H -0.215 1.215 24 H -0.201 1.201 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.039 0.961 28 H 0.046 0.954 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.035 0.965 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.088 0.912 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.225 -4.614 1.144 12.190 hybrid contribution -0.012 0.793 -0.141 0.805 sum -11.237 -3.821 1.003 11.911 Atomic orbital electron populations 1.22301 0.88014 1.01584 1.00085 1.61823 1.06726 1.14616 1.43856 1.22285 0.97807 0.87911 0.99505 1.21626 0.90886 1.01655 0.99494 1.21227 0.99348 0.91497 0.96938 0.92581 1.20482 0.91005 0.94941 0.93820 0.95559 1.22402 0.96102 0.97469 0.91363 1.59741 1.05300 1.14943 1.46498 1.22400 0.96110 0.94363 0.98905 1.22569 0.89898 0.95943 0.97452 1.21812 0.95490 0.97598 0.98980 1.21698 0.99506 0.92712 0.98529 1.19353 0.87018 0.95695 0.93481 0.95808 1.21267 0.91350 0.94189 1.47888 0.92632 1.24928 0.97454 0.95867 0.95639 1.69978 1.04189 1.27979 1.50238 0.86758 0.78811 0.85181 0.78155 1.20962 1.21515 1.20117 0.91626 0.91909 0.96110 0.95432 0.91596 0.90159 0.91776 0.94903 0.91045 0.92110 0.96469 0.91886 0.92889 0.94245 0.94964 0.91235 0.94383 0.92057 0.93403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.60 60.06 0.58 0.92 16 2 N -0.55 -8.43 4.89 -242.90 -1.19 -9.62 16 3 C 0.05 0.84 5.45 -3.76 -0.02 0.82 16 4 C -0.10 -1.88 4.90 -26.59 -0.13 -2.01 16 5 C -0.07 -1.47 1.63 -90.87 -0.15 -1.62 16 6 H 0.06 1.22 7.68 -51.93 -0.40 0.82 16 7 C 0.11 1.98 1.63 -70.27 -0.11 1.86 16 8 H 0.03 0.54 7.06 -51.93 -0.37 0.18 16 9 C 0.05 0.86 3.73 -3.88 -0.01 0.85 16 10 N -0.54 -9.67 3.43 -237.08 -0.81 -10.48 16 11 C 0.03 0.43 8.11 60.07 0.49 0.92 16 12 C 0.07 1.27 5.50 -2.82 -0.02 1.26 16 13 C -0.10 -2.14 5.94 -25.95 -0.15 -2.30 16 14 C -0.09 -2.05 4.59 -26.02 -0.12 -2.17 16 15 C 0.06 1.53 1.60 -90.06 -0.14 1.39 16 16 H 0.02 0.64 6.82 -51.93 -0.35 0.29 16 17 C -0.51 -13.58 7.98 -34.44 -0.27 -13.85 16 18 H 0.06 1.46 6.05 -52.48 -0.32 1.14 16 19 C 0.06 1.70 5.03 -17.82 -0.09 1.61 16 20 N -0.88 -24.92 11.93 55.43 0.66 -24.26 16 21 Si 0.88 21.23 29.54 -169.99 -5.02 16.21 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 30 H 0.08 1.60 6.36 -51.93 -0.33 1.27 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.03 0.53 8.11 -51.92 -0.42 0.11 16 33 H 0.07 1.03 6.00 -51.93 -0.31 0.72 16 34 H 0.06 0.79 7.99 -51.93 -0.41 0.37 16 35 H 0.02 0.23 7.81 -51.93 -0.41 -0.17 16 36 H 0.06 0.83 6.44 -51.93 -0.33 0.49 16 37 H 0.05 0.85 7.57 -51.93 -0.39 0.46 16 38 H 0.04 0.78 6.84 -51.93 -0.36 0.42 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 41 H 0.04 0.88 6.47 -51.93 -0.34 0.55 16 42 H 0.06 1.65 6.54 -51.93 -0.34 1.31 16 43 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 307.89 15.07 4.64 4.64 Total: -1.00 -27.71 307.89 -9.47 -37.19 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -7.59 Total: -1.34 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -0.16 Total: -12.33 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: -1.34 Total: -44.36 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.71 -9.47 -37.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260404512.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.703 kcal (2) G-P(sol) polarization free energy of solvation -27.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds