Wall clock time and date at job start Mon Mar 30 2020 04:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46764 * 111.00022 * 2 1 4 4 C 1.53260 * 109.93810 * 185.83083 * 3 2 1 5 5 C 1.53020 * 108.63215 * 301.44947 * 4 3 2 6 6 H 1.08996 * 109.68374 * 295.86336 * 5 4 3 7 7 C 1.50932 * 109.72873 * 57.22361 * 5 4 3 8 8 H 1.08999 * 105.49818 * 54.38560 * 7 5 4 9 9 C 1.47091 * 111.00062 * 124.74909 * 2 1 3 10 10 N 1.44354 * 117.20513 * 171.52870 * 7 5 4 11 11 C 1.46901 * 111.00322 * 153.21351 * 10 7 5 12 12 C 1.46900 * 113.37623 * 278.95464 * 10 7 5 13 13 C 1.54906 * 108.81299 * 94.15040 * 12 10 7 14 14 C 1.52570 * 109.88120 * 330.32389 * 13 12 10 15 15 C 1.54489 * 109.73162 * 175.31040 * 5 4 3 16 16 H 1.09003 * 110.33078 * 287.60653 * 15 5 4 17 17 C 1.50695 * 110.33550 * 49.88450 * 15 5 4 18 18 H 1.08006 * 119.99785 * 355.54558 * 17 15 5 19 19 C 1.37879 * 120.00410 * 175.55072 * 17 15 5 20 20 N 1.31517 * 119.99622 * 0.02562 * 19 17 15 21 21 Si 1.86792 * 120.00043 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46970 * 90.00082 * 21 19 17 23 23 H 1.48502 * 109.47050 * 209.99906 * 21 19 17 24 24 H 1.48500 * 109.47378 * 330.00188 * 21 19 17 25 25 H 1.09005 * 109.46924 * 56.04434 * 1 2 3 26 26 H 1.08993 * 109.47294 * 176.04697 * 1 2 3 27 27 H 1.09003 * 109.46883 * 296.05039 * 1 2 3 28 28 H 1.08996 * 109.39590 * 65.68549 * 3 2 1 29 29 H 1.09005 * 109.31522 * 305.92194 * 3 2 1 30 30 H 1.09004 * 109.60700 * 181.70741 * 4 3 2 31 31 H 1.09002 * 109.60924 * 61.19838 * 4 3 2 32 32 H 1.09008 * 109.55896 * 294.97521 * 9 2 1 33 33 H 1.08993 * 109.55960 * 55.29727 * 9 2 1 34 34 H 1.09002 * 109.47401 * 183.10071 * 11 10 7 35 35 H 1.09001 * 109.46874 * 63.10084 * 11 10 7 36 36 H 1.09004 * 109.46970 * 303.10217 * 11 10 7 37 37 H 1.09002 * 109.58350 * 213.95179 * 12 10 7 38 38 H 1.08997 * 109.58193 * 334.34812 * 12 10 7 39 39 H 1.09004 * 109.40282 * 90.44660 * 13 12 10 40 40 H 1.09001 * 109.40306 * 210.28260 * 13 12 10 41 41 H 1.08999 * 109.71506 * 62.37253 * 14 13 12 42 42 H 1.08997 * 109.71689 * 183.00849 * 14 13 12 43 43 H 0.96998 * 119.99688 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9949 1.3702 0.0000 4 6 3.5203 1.3444 -0.1464 5 6 4.1090 0.5352 1.0113 6 1 3.8996 1.0389 1.9550 7 6 3.5172 -0.8532 1.0152 8 1 3.6972 -1.2493 0.0158 9 6 1.9961 -0.7827 1.1283 10 7 4.0955 -1.8146 1.9236 11 6 3.1135 -2.8403 2.3000 12 6 5.3292 -2.4285 1.4147 13 6 6.5431 -1.6320 1.9545 14 6 6.1522 -0.1731 2.1698 15 6 5.6360 0.3931 0.8250 16 1 5.8555 -0.3003 0.0130 17 6 6.2575 1.7381 0.5500 18 1 5.6300 2.6099 0.4371 19 6 7.6270 1.8557 0.4424 20 7 8.3909 0.7940 0.5793 21 14 8.3972 3.5228 0.1009 22 1 8.6887 4.2062 1.3867 23 1 9.6597 3.3385 -0.6590 24 1 7.4557 4.3492 -0.6965 25 1 -0.3633 0.5740 -0.8525 26 1 -0.3633 -1.0251 -0.0708 27 1 -0.3633 0.4513 0.9233 28 1 1.7295 1.8598 0.9369 29 1 1.5607 1.9230 -0.8331 30 1 3.9080 2.3627 -0.1153 31 1 3.7891 0.8767 -1.0936 32 1 1.7220 -0.3004 2.0667 33 1 1.5810 -1.7901 1.0991 34 1 3.5583 -3.5198 3.0270 35 1 2.8156 -3.4006 1.4137 36 1 2.2379 -2.3614 2.7384 37 1 5.3901 -3.4623 1.7548 38 1 5.3289 -2.4000 0.3251 39 1 6.8672 -2.0636 2.9016 40 1 7.3598 -1.6843 1.2345 41 1 5.3653 -0.1103 2.9214 42 1 7.0217 0.3960 2.4987 43 1 9.3544 0.8768 0.5040 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260404512.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:56 Heat of formation + Delta-G solvation = -0.974595 kcal Electronic energy + Delta-G solvation = -20642.231265 eV Core-core repulsion = 17914.574700 eV Total energy + Delta-G solvation = -2727.656566 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.23184 -38.05972 -36.42334 -34.00436 -33.48550 -31.00271 -29.35256 -27.78887 -26.71242 -25.76860 -24.40428 -22.53904 -21.89695 -20.83101 -20.21571 -18.14802 -17.27398 -16.55857 -16.27521 -15.99202 -15.89050 -15.32550 -14.93469 -14.70661 -14.43690 -14.14834 -13.96473 -13.61993 -13.32721 -13.14353 -12.85292 -12.72580 -12.58092 -12.45275 -12.36124 -12.22888 -12.07262 -11.90776 -11.66122 -11.52424 -11.17925 -11.04897 -10.52604 -10.32028 -10.23422 -9.24116 -8.91846 -7.98968 -6.08256 1.42117 1.43473 1.52125 2.48872 2.74168 3.27432 3.30018 3.84720 4.00716 4.13604 4.20971 4.28804 4.41887 4.46905 4.53486 4.57389 4.61633 4.64376 4.67591 4.72286 4.83504 4.91018 4.94444 5.02643 5.03185 5.04846 5.09294 5.10348 5.28237 5.33802 5.44555 5.47413 5.65793 5.77290 5.90461 6.04123 6.11596 6.17311 6.21834 6.37855 6.51031 6.56981 7.03665 7.57202 9.06863 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021815 B = 0.008493 C = 0.006352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.218274 B = 3296.027986 C = 4407.226093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.561 5.561 3 C 0.062 3.938 4 C -0.094 4.094 5 C -0.066 4.066 6 H 0.045 0.955 7 C 0.113 3.887 8 H 0.000 1.000 9 C 0.064 3.936 10 N -0.554 5.554 11 C 0.030 3.970 12 C 0.079 3.921 13 C -0.096 4.096 14 C -0.074 4.074 15 C 0.065 3.935 16 H -0.011 1.011 17 C -0.523 4.523 18 H 0.055 0.945 19 C 0.013 3.987 20 N -0.910 5.910 21 Si 0.942 3.058 22 H -0.280 1.280 23 H -0.288 1.288 24 H -0.269 1.269 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.029 0.971 28 H 0.032 0.968 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.036 0.964 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.027 0.973 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.020 0.980 39 H 0.046 0.954 40 H 0.038 0.962 41 H 0.042 0.958 42 H 0.022 0.978 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.090 -4.985 1.691 15.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.286 5.286 3 C -0.066 4.066 4 C -0.133 4.133 5 C -0.085 4.085 6 H 0.064 0.936 7 C 0.004 3.996 8 H 0.018 0.982 9 C -0.064 4.064 10 N -0.279 5.279 11 C -0.117 4.117 12 C -0.049 4.049 13 C -0.135 4.135 14 C -0.113 4.113 15 C 0.046 3.954 16 H 0.007 0.993 17 C -0.562 4.562 18 H 0.074 0.926 19 C -0.185 4.185 20 N -0.550 5.550 21 Si 0.769 3.231 22 H -0.206 1.206 23 H -0.214 1.214 24 H -0.194 1.194 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.046 0.954 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.038 0.962 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.041 0.959 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.649 -5.032 1.637 14.639 hybrid contribution 0.753 0.913 -0.293 1.219 sum -12.896 -4.120 1.344 13.604 Atomic orbital electron populations 1.22381 0.85380 1.02984 1.01083 1.61801 1.09064 1.13935 1.43816 1.22132 0.94975 0.88913 1.00558 1.21495 0.93832 1.00158 0.97786 1.21104 0.96931 0.93596 0.96911 0.93625 1.20342 0.93218 0.93372 0.92655 0.98157 1.22307 0.93538 0.98835 0.91683 1.59639 1.06064 1.16215 1.45935 1.22509 0.95730 0.93754 0.99729 1.22406 0.89255 0.97034 0.96201 1.21690 0.96169 0.96667 0.98954 1.21501 0.97797 0.93885 0.98081 1.19208 0.89913 0.93830 0.92428 0.99306 1.21633 0.91756 0.95248 1.47526 0.92649 1.25649 0.98089 0.99061 0.95722 1.70116 1.04137 1.29692 1.51029 0.85803 0.77886 0.81386 0.78014 1.20600 1.21445 1.19350 0.90416 0.90408 0.95236 0.94944 0.89681 0.91593 0.93704 0.94613 0.88893 0.90473 0.95407 0.90346 0.89636 0.96183 0.93507 0.94274 0.93900 0.95887 0.93644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 9.60 127.69 1.23 1.82 16 2 N -0.56 -15.89 4.89 -922.40 -4.51 -20.41 16 3 C 0.06 1.87 5.45 86.42 0.47 2.34 16 4 C -0.09 -3.65 4.90 30.69 0.15 -3.50 16 5 C -0.07 -2.79 1.63 -10.95 -0.02 -2.81 16 6 H 0.05 2.00 7.68 -2.39 -0.02 1.98 16 7 C 0.11 4.13 1.63 44.61 0.07 4.21 16 8 H 0.00 0.02 7.06 -2.39 -0.02 0.00 16 9 C 0.06 1.86 3.73 86.16 0.32 2.18 16 10 N -0.55 -19.02 3.43 -904.00 -3.10 -22.12 16 11 C 0.03 0.74 8.11 127.69 1.04 1.78 16 12 C 0.08 2.88 5.50 86.95 0.48 3.36 16 13 C -0.10 -4.22 5.94 31.10 0.18 -4.03 16 14 C -0.07 -3.66 4.59 31.06 0.14 -3.52 16 15 C 0.06 3.28 1.60 -10.43 -0.02 3.26 16 16 H -0.01 -0.64 6.82 -2.39 -0.02 -0.65 16 17 C -0.52 -28.98 7.98 25.60 0.20 -28.78 16 18 H 0.06 3.00 6.05 -2.91 -0.02 2.98 16 19 C 0.01 0.75 5.03 84.65 0.43 1.18 16 20 N -0.91 -53.33 11.93 21.45 0.26 -53.08 16 21 Si 0.94 44.54 29.54 68.60 2.03 46.57 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 24 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 25 H 0.08 1.40 8.09 -2.38 -0.02 1.38 16 26 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 2.24 8.08 -2.38 -0.02 2.22 16 30 H 0.07 2.68 6.36 -2.39 -0.02 2.67 16 31 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.04 1.03 8.11 -2.38 -0.02 1.01 16 33 H 0.09 2.31 6.00 -2.39 -0.01 2.30 16 34 H 0.08 1.69 7.99 -2.39 -0.02 1.68 16 35 H 0.03 0.65 7.81 -2.39 -0.02 0.63 16 36 H 0.08 1.73 6.44 -2.38 -0.02 1.72 16 37 H 0.09 2.57 7.57 -2.39 -0.02 2.55 16 38 H 0.02 0.81 6.84 -2.39 -0.02 0.79 16 39 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.04 2.02 6.47 -2.39 -0.02 2.01 16 42 H 0.02 1.27 6.54 -2.39 -0.02 1.26 16 43 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -62.03 307.89 0.30 -61.72 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 0.96 Total: 9.83 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: 4.68 Total: -22.51 kcal Atomic # 7 Polarization: -88.25 SS G_CDS: -7.36 Total: -95.61 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -62.03 0.30 -61.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260404512.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.747 kcal (2) G-P(sol) polarization free energy of solvation -62.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds