Wall clock time and date at job start Mon Mar 30 2020 04:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46693 * 111.00204 * 2 1 4 4 C 1.53406 * 110.29102 * 185.81531 * 3 2 1 5 5 C 1.52734 * 108.29645 * 301.70873 * 4 3 2 6 6 H 1.09003 * 106.92714 * 300.89563 * 5 4 3 7 7 C 1.50560 * 109.93574 * 56.73343 * 5 4 3 8 8 H 1.09003 * 101.16943 * 49.35020 * 7 5 4 9 9 C 1.47310 * 110.99695 * 125.15095 * 2 1 3 10 10 N 1.41178 * 120.14012 * 160.80150 * 7 5 4 11 11 C 1.46902 * 110.99530 * 145.60489 * 10 7 5 12 12 C 1.48150 * 113.34802 * 271.32347 * 10 7 5 13 13 C 1.48048 * 109.61368 * 76.28200 * 12 10 7 14 14 C 1.52508 * 114.45164 * 297.27814 * 13 12 10 15 15 C 1.51414 * 110.26362 * 82.18214 * 14 13 12 16 16 H 1.09004 * 109.36422 * 30.67805 * 15 14 13 17 17 C 1.50690 * 109.37213 * 150.29788 * 15 14 13 18 18 H 1.08004 * 119.99998 * 35.04688 * 17 15 14 19 19 C 1.37879 * 120.00445 * 215.05140 * 17 15 14 20 20 N 1.31515 * 119.99802 * 359.97438 * 19 17 15 21 21 Si 1.86801 * 120.00263 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47238 * 89.99469 * 21 19 17 23 23 H 1.48504 * 109.47093 * 209.99990 * 21 19 17 24 24 H 1.48503 * 109.46919 * 329.99455 * 21 19 17 25 25 H 1.08999 * 109.47204 * 294.84794 * 1 2 3 26 26 H 1.09004 * 109.46721 * 54.84989 * 1 2 3 27 27 H 1.08991 * 109.47004 * 174.84646 * 1 2 3 28 28 H 1.09003 * 109.33579 * 306.07176 * 3 2 1 29 29 H 1.09002 * 109.32978 * 65.73282 * 3 2 1 30 30 H 1.08997 * 109.69733 * 61.41283 * 4 3 2 31 31 H 1.08996 * 109.69608 * 182.00831 * 4 3 2 32 32 H 1.09001 * 109.60171 * 56.09296 * 9 2 1 33 33 H 1.08997 * 109.60646 * 295.60056 * 9 2 1 34 34 H 1.09000 * 109.46726 * 190.97360 * 11 10 7 35 35 H 1.08997 * 109.47519 * 310.97617 * 11 10 7 36 36 H 1.09003 * 109.46755 * 70.97539 * 11 10 7 37 37 H 1.09003 * 109.44794 * 316.24060 * 12 10 7 38 38 H 1.08999 * 109.42162 * 196.30801 * 12 10 7 39 39 H 1.08997 * 108.49117 * 175.98285 * 13 12 10 40 40 H 1.09012 * 108.48510 * 58.56400 * 13 12 10 41 41 H 1.09007 * 109.33383 * 202.42394 * 14 13 12 42 42 H 1.09003 * 109.33663 * 321.93483 * 14 13 12 43 43 H 0.96994 * 120.00214 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9948 1.3695 0.0000 4 6 3.5219 1.3531 -0.1458 5 6 4.1051 0.5415 1.0092 6 1 3.7877 1.0285 1.9313 7 6 3.5122 -0.8424 1.0150 8 1 3.6447 -1.1333 -0.0271 9 6 1.9969 -0.7918 1.1245 10 7 4.1621 -1.8891 1.7044 11 6 3.1870 -2.8212 2.2862 12 6 5.1562 -2.6097 0.8754 13 6 6.3823 -1.7902 0.7453 14 6 6.1780 -0.4569 0.0337 15 6 5.6396 0.5765 1.0005 16 1 6.0117 0.3624 2.0025 17 6 6.1058 1.9460 0.5791 18 1 6.2058 2.1834 -0.4698 19 6 6.4050 2.8961 1.5325 20 7 6.2830 2.6072 2.8097 21 14 6.9823 4.5941 1.0100 22 1 5.8077 5.4876 0.8460 23 1 7.8866 5.1507 2.0482 24 1 7.7119 4.4938 -0.2796 25 1 -0.3633 0.4318 0.9325 26 1 -0.3633 0.5917 -0.8403 27 1 -0.3633 -1.0234 -0.0923 28 1 1.5588 1.9235 -0.8314 29 1 1.7295 1.8578 0.9377 30 1 3.7954 0.8912 -1.0944 31 1 3.9054 2.3727 -0.1089 32 1 1.5932 -1.8033 1.0808 33 1 1.7138 -0.3228 2.0668 34 1 3.6970 -3.5011 2.9687 35 1 2.4286 -2.2599 2.8318 36 1 2.7122 -3.3942 1.4898 37 1 4.7375 -2.7958 -0.1137 38 1 5.4032 -3.5596 1.3495 39 1 7.1260 -2.3658 0.1942 40 1 6.7737 -1.5929 1.7435 41 1 7.1308 -0.1129 -0.3688 42 1 5.4700 -0.5893 -0.7845 43 1 6.4938 3.2754 3.4804 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260404529.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:59 Heat of formation + Delta-G solvation = 17.160910 kcal Electronic energy + Delta-G solvation = -20706.039276 eV Core-core repulsion = 17979.169124 eV Total energy + Delta-G solvation = -2726.870151 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.93889 -36.75902 -34.97067 -32.54533 -31.88826 -29.54425 -28.15751 -26.54370 -24.94594 -24.46390 -22.85932 -21.37176 -20.36046 -19.66634 -17.90985 -16.23023 -15.86833 -15.11835 -14.76498 -14.47546 -14.20947 -14.00373 -13.60568 -13.46111 -12.77350 -12.69134 -12.49460 -12.16037 -12.04083 -11.86495 -11.43763 -11.26613 -11.19996 -10.86524 -10.82046 -10.51962 -10.39050 -10.24762 -10.00029 -9.77620 -9.55760 -9.07091 -8.72475 -8.54275 -8.30668 -7.99371 -7.40957 -5.90346 -3.91680 3.34018 3.41718 3.44601 4.01576 4.50451 4.51386 5.19516 5.31419 5.40303 5.49343 5.51185 5.57374 5.63390 5.65473 5.77591 5.89782 5.91548 5.92295 5.95994 6.05369 6.12365 6.17286 6.26311 6.35857 6.53399 6.59891 6.72766 6.75019 6.83555 6.98845 7.15420 7.25334 7.35248 7.36697 7.48630 7.54886 7.72441 7.89852 8.01778 8.07239 8.21785 8.61642 9.19714 9.69594 11.18421 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019406 B = 0.009030 C = 0.006960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.523863 B = 3100.029953 C = 4022.223482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.546 5.546 3 C 0.052 3.948 4 C -0.091 4.091 5 C -0.059 4.059 6 H 0.043 0.957 7 C 0.098 3.902 8 H 0.019 0.981 9 C 0.060 3.940 10 N -0.535 5.535 11 C 0.033 3.967 12 C 0.081 3.919 13 C -0.120 4.120 14 C -0.105 4.105 15 C 0.055 3.945 16 H 0.062 0.938 17 C -0.505 4.505 18 H 0.051 0.949 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.881 3.119 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.275 1.275 25 H 0.021 0.979 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.028 0.972 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.032 0.968 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.018 0.982 37 H 0.028 0.972 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.067 0.933 41 H 0.052 0.948 42 H 0.035 0.965 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.056 -8.068 -3.274 11.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.271 5.271 3 C -0.076 4.076 4 C -0.129 4.129 5 C -0.079 4.079 6 H 0.062 0.938 7 C -0.012 4.012 8 H 0.037 0.963 9 C -0.069 4.069 10 N -0.259 5.259 11 C -0.115 4.115 12 C -0.045 4.045 13 C -0.158 4.158 14 C -0.143 4.143 15 C 0.037 3.963 16 H 0.080 0.920 17 C -0.543 4.543 18 H 0.070 0.930 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.709 3.291 22 H -0.209 1.209 23 H -0.214 1.214 24 H -0.200 1.200 25 H 0.039 0.961 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.036 0.964 37 H 0.046 0.954 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.618 -7.994 -3.179 11.491 hybrid contribution -0.545 1.065 -0.075 1.199 sum -8.163 -6.929 -3.254 11.191 Atomic orbital electron populations 1.22292 0.88142 1.01475 1.00073 1.61829 1.06597 1.14783 1.43896 1.22321 0.98169 0.87563 0.99499 1.21584 0.90369 1.02370 0.98578 1.20702 0.99608 0.90333 0.97260 0.93840 1.19521 0.90529 0.94398 0.96786 0.96316 1.22201 0.95813 0.97270 0.91569 1.58845 1.17505 1.10339 1.39249 1.22325 0.95433 0.95627 0.98163 1.21444 0.93250 0.95718 0.94131 1.20711 0.95895 0.97335 1.01856 1.21356 1.00114 0.94195 0.98619 1.18546 0.88599 0.92465 0.96716 0.91954 1.21149 1.43682 0.97072 0.92389 0.93031 1.24965 0.95501 0.98235 0.95052 1.69948 1.49190 1.34027 0.99599 0.86781 0.78688 0.85321 0.78312 1.20856 1.21408 1.19978 0.96081 0.91672 0.92020 0.91805 0.95360 0.92921 0.89303 0.91232 0.95021 0.92135 0.91729 0.96382 0.95399 0.91763 0.93702 0.91449 0.92966 0.94590 0.93207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.61 60.07 0.58 0.95 16 2 N -0.55 -9.02 4.80 -243.11 -1.17 -10.19 16 3 C 0.05 0.92 5.43 -3.73 -0.02 0.90 16 4 C -0.09 -1.88 4.80 -26.66 -0.13 -2.00 16 5 C -0.06 -1.32 1.63 -91.72 -0.15 -1.47 16 6 H 0.04 1.11 8.10 -51.93 -0.42 0.69 16 7 C 0.10 1.88 1.91 -72.42 -0.14 1.74 16 8 H 0.02 0.38 5.11 -51.93 -0.27 0.12 16 9 C 0.06 1.01 3.72 -4.10 -0.02 0.99 16 10 N -0.54 -9.69 4.48 -243.28 -1.09 -10.78 16 11 C 0.03 0.47 8.25 60.07 0.50 0.97 16 12 C 0.08 1.35 5.26 -5.54 -0.03 1.32 16 13 C -0.12 -2.22 5.33 -29.39 -0.16 -2.38 16 14 C -0.11 -2.25 4.92 -27.78 -0.14 -2.39 16 15 C 0.06 1.36 2.00 -92.32 -0.18 1.17 16 16 H 0.06 1.76 6.63 -51.93 -0.34 1.42 16 17 C -0.50 -13.45 5.99 -34.44 -0.21 -13.66 16 18 H 0.05 1.37 7.81 -52.48 -0.41 0.96 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -25.82 12.79 55.43 0.71 -25.11 16 21 Si 0.88 21.22 29.54 -169.99 -5.02 16.20 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 25 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.77 8.07 -51.93 -0.42 0.35 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 1.01 8.06 -51.93 -0.42 0.59 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 1.09 7.57 -51.93 -0.39 0.69 16 31 H 0.09 2.00 6.75 -51.93 -0.35 1.65 16 32 H 0.07 1.05 6.15 -51.93 -0.32 0.73 16 33 H 0.03 0.56 8.05 -51.93 -0.42 0.14 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.91 6.65 -51.93 -0.35 0.57 16 36 H 0.02 0.24 7.57 -51.93 -0.39 -0.16 16 37 H 0.03 0.46 7.50 -51.93 -0.39 0.07 16 38 H 0.06 0.92 7.92 -51.93 -0.41 0.51 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.36 7.54 -51.92 -0.39 0.97 16 41 H 0.05 1.15 7.80 -51.93 -0.40 0.74 16 42 H 0.04 0.75 6.32 -51.93 -0.33 0.43 16 43 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 309.85 15.07 4.67 4.67 Total: -1.00 -28.44 309.85 -9.76 -38.20 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -7.67 Total: -0.80 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -0.19 Total: -12.19 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: -1.55 Total: -46.08 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.44 -9.76 -38.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260404529.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.360 kcal (2) G-P(sol) polarization free energy of solvation -28.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds