Wall clock time and date at job start Mon Mar 30 2020 04:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46693 * 111.00204 * 2 1 4 4 C 1.53406 * 110.29102 * 185.81531 * 3 2 1 5 5 C 1.52734 * 108.29645 * 301.70873 * 4 3 2 6 6 H 1.09003 * 106.92714 * 300.89563 * 5 4 3 7 7 C 1.50560 * 109.93574 * 56.73343 * 5 4 3 8 8 H 1.09003 * 101.16943 * 49.35020 * 7 5 4 9 9 C 1.47310 * 110.99695 * 125.15095 * 2 1 3 10 10 N 1.41178 * 120.14012 * 160.80150 * 7 5 4 11 11 C 1.46902 * 110.99530 * 145.60489 * 10 7 5 12 12 C 1.48150 * 113.34802 * 271.32347 * 10 7 5 13 13 C 1.48048 * 109.61368 * 76.28200 * 12 10 7 14 14 C 1.52508 * 114.45164 * 297.27814 * 13 12 10 15 15 C 1.51414 * 110.26362 * 82.18214 * 14 13 12 16 16 H 1.09004 * 109.36422 * 30.67805 * 15 14 13 17 17 C 1.50690 * 109.37213 * 150.29788 * 15 14 13 18 18 H 1.08004 * 119.99998 * 35.04688 * 17 15 14 19 19 C 1.37879 * 120.00445 * 215.05140 * 17 15 14 20 20 N 1.31515 * 119.99802 * 359.97438 * 19 17 15 21 21 Si 1.86801 * 120.00263 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47238 * 89.99469 * 21 19 17 23 23 H 1.48504 * 109.47093 * 209.99990 * 21 19 17 24 24 H 1.48503 * 109.46919 * 329.99455 * 21 19 17 25 25 H 1.08999 * 109.47204 * 294.84794 * 1 2 3 26 26 H 1.09004 * 109.46721 * 54.84989 * 1 2 3 27 27 H 1.08991 * 109.47004 * 174.84646 * 1 2 3 28 28 H 1.09003 * 109.33579 * 306.07176 * 3 2 1 29 29 H 1.09002 * 109.32978 * 65.73282 * 3 2 1 30 30 H 1.08997 * 109.69733 * 61.41283 * 4 3 2 31 31 H 1.08996 * 109.69608 * 182.00831 * 4 3 2 32 32 H 1.09001 * 109.60171 * 56.09296 * 9 2 1 33 33 H 1.08997 * 109.60646 * 295.60056 * 9 2 1 34 34 H 1.09000 * 109.46726 * 190.97360 * 11 10 7 35 35 H 1.08997 * 109.47519 * 310.97617 * 11 10 7 36 36 H 1.09003 * 109.46755 * 70.97539 * 11 10 7 37 37 H 1.09003 * 109.44794 * 316.24060 * 12 10 7 38 38 H 1.08999 * 109.42162 * 196.30801 * 12 10 7 39 39 H 1.08997 * 108.49117 * 175.98285 * 13 12 10 40 40 H 1.09012 * 108.48510 * 58.56400 * 13 12 10 41 41 H 1.09007 * 109.33383 * 202.42394 * 14 13 12 42 42 H 1.09003 * 109.33663 * 321.93483 * 14 13 12 43 43 H 0.96994 * 120.00214 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9948 1.3695 0.0000 4 6 3.5219 1.3531 -0.1458 5 6 4.1051 0.5415 1.0092 6 1 3.7877 1.0285 1.9313 7 6 3.5122 -0.8424 1.0150 8 1 3.6447 -1.1333 -0.0271 9 6 1.9969 -0.7918 1.1245 10 7 4.1621 -1.8891 1.7044 11 6 3.1870 -2.8212 2.2862 12 6 5.1562 -2.6097 0.8754 13 6 6.3823 -1.7902 0.7453 14 6 6.1780 -0.4569 0.0337 15 6 5.6396 0.5765 1.0005 16 1 6.0117 0.3624 2.0025 17 6 6.1058 1.9460 0.5791 18 1 6.2058 2.1834 -0.4698 19 6 6.4050 2.8961 1.5325 20 7 6.2830 2.6072 2.8097 21 14 6.9823 4.5941 1.0100 22 1 5.8077 5.4876 0.8460 23 1 7.8866 5.1507 2.0482 24 1 7.7119 4.4938 -0.2796 25 1 -0.3633 0.4318 0.9325 26 1 -0.3633 0.5917 -0.8403 27 1 -0.3633 -1.0234 -0.0923 28 1 1.5588 1.9235 -0.8314 29 1 1.7295 1.8578 0.9377 30 1 3.7954 0.8912 -1.0944 31 1 3.9054 2.3727 -0.1089 32 1 1.5932 -1.8033 1.0808 33 1 1.7138 -0.3228 2.0668 34 1 3.6970 -3.5011 2.9687 35 1 2.4286 -2.2599 2.8318 36 1 2.7122 -3.3942 1.4898 37 1 4.7375 -2.7958 -0.1137 38 1 5.4032 -3.5596 1.3495 39 1 7.1260 -2.3658 0.1942 40 1 6.7737 -1.5929 1.7435 41 1 7.1308 -0.1129 -0.3688 42 1 5.4700 -0.5893 -0.7845 43 1 6.4938 3.2754 3.4804 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260404529.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:58 Heat of formation + Delta-G solvation = -1.949084 kcal Electronic energy + Delta-G solvation = -20706.867947 eV Core-core repulsion = 17979.169124 eV Total energy + Delta-G solvation = -2727.698823 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.44717 -38.12107 -36.69695 -34.13458 -33.76118 -31.08841 -29.69977 -27.83466 -26.76932 -25.87979 -24.44501 -22.96130 -21.89276 -21.17426 -19.61380 -18.22826 -17.29295 -16.70384 -16.42837 -15.99391 -15.65899 -15.35966 -15.07630 -14.97175 -14.39161 -14.22791 -14.08855 -13.67321 -13.35256 -13.25196 -12.95797 -12.89409 -12.69802 -12.54831 -12.38290 -12.18385 -12.08186 -11.86960 -11.71605 -11.32174 -11.20072 -10.93089 -10.58406 -10.50568 -10.36547 -9.30810 -8.81888 -8.04067 -6.10801 1.39750 1.41062 1.50703 2.45924 2.69619 3.19137 3.26857 3.84442 4.01063 4.08889 4.17473 4.21701 4.37497 4.43832 4.53491 4.56329 4.59625 4.63491 4.63645 4.69755 4.76849 4.91295 4.93727 4.98568 5.03566 5.04813 5.10085 5.11875 5.20457 5.31826 5.47015 5.54313 5.62815 5.70170 5.72914 6.02235 6.07115 6.10855 6.23393 6.41962 6.52563 6.65587 7.08116 7.52995 9.04663 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019406 B = 0.009030 C = 0.006960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.523863 B = 3100.029953 C = 4022.223482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.552 5.552 3 C 0.060 3.940 4 C -0.085 4.085 5 C -0.051 4.051 6 H -0.005 1.005 7 C 0.107 3.893 8 H 0.009 0.991 9 C 0.066 3.934 10 N -0.565 5.565 11 C 0.033 3.967 12 C 0.083 3.917 13 C -0.115 4.115 14 C -0.099 4.099 15 C 0.056 3.944 16 H 0.016 0.984 17 C -0.508 4.508 18 H 0.049 0.951 19 C 0.011 3.989 20 N -0.927 5.927 21 Si 0.942 3.058 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.266 1.266 25 H 0.022 0.978 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.015 0.985 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.019 0.981 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.038 0.962 37 H 0.037 0.963 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.042 0.958 41 H 0.039 0.961 42 H 0.041 0.959 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.494 -9.586 -4.673 14.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.277 5.277 3 C -0.068 4.068 4 C -0.124 4.124 5 C -0.071 4.071 6 H 0.014 0.986 7 C -0.003 4.003 8 H 0.027 0.973 9 C -0.062 4.062 10 N -0.289 5.289 11 C -0.114 4.114 12 C -0.043 4.043 13 C -0.153 4.153 14 C -0.136 4.136 15 C 0.037 3.963 16 H 0.035 0.965 17 C -0.547 4.547 18 H 0.068 0.932 19 C -0.187 4.187 20 N -0.567 5.567 21 Si 0.768 3.232 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.191 1.191 25 H 0.041 0.959 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.033 0.967 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.038 0.962 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.069 -9.525 -4.593 13.931 hybrid contribution -0.072 1.515 0.370 1.561 sum -9.141 -8.011 -4.223 12.867 Atomic orbital electron populations 1.22404 0.85490 1.03221 1.00847 1.61842 1.08930 1.13458 1.43504 1.22163 0.95862 0.88964 0.99771 1.21415 0.92897 1.00327 0.97721 1.20598 0.98043 0.92841 0.95597 0.98586 1.19332 0.91994 0.92692 0.96315 0.97252 1.22166 0.94037 0.98707 0.91282 1.58745 1.18968 1.11382 1.39846 1.22386 0.94933 0.95219 0.98815 1.21459 0.91802 0.96139 0.94851 1.20646 0.98000 0.96314 1.00294 1.21203 0.99193 0.95120 0.98123 1.18428 0.90430 0.92558 0.94894 0.96516 1.21464 1.42789 0.98242 0.92167 0.93240 1.25693 0.96064 1.01891 0.95021 1.70102 1.50872 1.35095 1.00643 0.85799 0.78292 0.81011 0.78059 1.20246 1.21392 1.19085 0.95888 0.90159 0.89951 0.89465 0.96713 0.92810 0.92050 0.88469 0.96240 0.90585 0.91801 0.94335 0.94483 0.88725 0.90887 0.93954 0.94257 0.94048 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 9.61 127.69 1.23 1.87 16 2 N -0.55 -17.04 4.80 -923.05 -4.43 -21.47 16 3 C 0.06 2.09 5.43 86.48 0.47 2.56 16 4 C -0.09 -3.59 4.80 30.64 0.15 -3.45 16 5 C -0.05 -2.34 1.63 -11.51 -0.02 -2.36 16 6 H 0.00 -0.25 8.10 -2.39 -0.02 -0.27 16 7 C 0.11 4.07 1.91 44.84 0.09 4.15 16 8 H 0.01 0.37 5.11 -2.39 -0.01 0.36 16 9 C 0.07 2.13 3.72 85.90 0.32 2.45 16 10 N -0.56 -19.76 4.48 -923.60 -4.14 -23.90 16 11 C 0.03 0.87 8.25 127.69 1.05 1.93 16 12 C 0.08 2.60 5.26 84.51 0.44 3.04 16 13 C -0.11 -4.17 5.33 28.87 0.15 -4.01 16 14 C -0.10 -4.29 4.92 29.91 0.15 -4.14 16 15 C 0.06 2.86 2.00 -11.90 -0.02 2.83 16 16 H 0.02 0.99 6.63 -2.38 -0.02 0.98 16 17 C -0.51 -28.19 5.99 25.60 0.15 -28.03 16 18 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 19 C 0.01 0.62 5.46 84.66 0.46 1.08 16 20 N -0.93 -56.47 12.79 21.45 0.27 -56.20 16 21 Si 0.94 44.74 29.54 68.60 2.03 46.77 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.08 1.60 8.07 -2.38 -0.02 1.58 16 27 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 28 H 0.09 2.61 8.06 -2.39 -0.02 2.59 16 29 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 2.22 7.57 -2.39 -0.02 2.20 16 31 H 0.06 2.87 6.75 -2.39 -0.02 2.85 16 32 H 0.10 2.60 6.15 -2.39 -0.01 2.59 16 33 H 0.02 0.67 8.05 -2.39 -0.02 0.65 16 34 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.06 1.66 6.65 -2.39 -0.02 1.65 16 36 H 0.04 0.86 7.57 -2.39 -0.02 0.84 16 37 H 0.04 1.11 7.50 -2.39 -0.02 1.09 16 38 H 0.09 2.38 7.92 -2.39 -0.02 2.37 16 39 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.04 1.74 7.54 -2.38 -0.02 1.72 16 41 H 0.04 1.76 7.80 -2.38 -0.02 1.74 16 42 H 0.04 1.73 6.32 -2.39 -0.02 1.71 16 43 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -64.62 309.85 -0.70 -65.31 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.95 Total: 11.56 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: 4.62 Total: -22.09 kcal Atomic # 7 Polarization: -93.26 SS G_CDS: -8.30 Total: -101.56 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -64.62 -0.70 -65.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260404529.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.365 kcal (2) G-P(sol) polarization free energy of solvation -64.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds