Wall clock time and date at job start Mon Mar 30 2020 04:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.44934 * 110.99984 * 2 1 4 4 C 1.50246 * 114.41543 * 182.76026 * 3 2 1 5 5 C 1.49409 * 117.73567 * 33.06602 * 4 3 2 6 6 H 1.08998 * 104.14615 * 222.74874 * 5 4 3 7 7 C 1.52637 * 117.17876 * 337.70630 * 5 4 3 8 8 H 1.09008 * 108.30570 * 268.07295 * 7 5 4 9 9 C 1.45105 * 111.00050 * 232.41524 * 2 1 3 10 10 N 1.46326 * 107.67493 * 151.23123 * 7 5 4 11 11 C 1.46902 * 110.99742 * 145.66281 * 10 7 5 12 12 C 1.44628 * 113.12247 * 271.20906 * 10 7 5 13 13 C 1.50387 * 115.28640 * 94.42607 * 12 10 7 14 14 C 1.56065 * 104.93396 * 297.76881 * 13 12 10 15 15 C 1.51795 * 112.31397 * 110.48847 * 5 4 3 16 16 H 1.08998 * 109.14058 * 168.76047 * 15 5 4 17 17 C 1.50704 * 109.14095 * 49.63606 * 15 5 4 18 18 H 1.07999 * 119.99788 * 275.09237 * 17 15 5 19 19 C 1.37871 * 120.00039 * 95.08375 * 17 15 5 20 20 N 1.31515 * 120.00010 * 183.82455 * 19 17 15 21 21 Si 1.86804 * 120.00069 * 3.82266 * 19 17 15 22 22 H 1.48496 * 109.46792 * 84.86012 * 21 19 17 23 23 H 1.48502 * 109.47259 * 204.85882 * 21 19 17 24 24 H 1.48495 * 109.47031 * 324.85796 * 21 19 17 25 25 H 1.08997 * 109.46778 * 187.58135 * 1 2 3 26 26 H 1.09004 * 109.46912 * 307.58350 * 1 2 3 27 27 H 1.09003 * 109.46837 * 67.58469 * 1 2 3 28 28 H 1.09001 * 108.49253 * 304.03806 * 3 2 1 29 29 H 1.09000 * 108.49534 * 61.48277 * 3 2 1 30 30 H 1.08996 * 107.79050 * 270.98049 * 4 3 2 31 31 H 1.08996 * 107.79084 * 155.15591 * 4 3 2 32 32 H 1.09000 * 108.78638 * 63.25128 * 9 2 1 33 33 H 1.09001 * 108.70134 * 304.97846 * 9 2 1 34 34 H 1.09008 * 109.47090 * 60.00757 * 11 10 7 35 35 H 1.09001 * 109.46872 * 180.02562 * 11 10 7 36 36 H 1.09001 * 109.47455 * 300.00151 * 11 10 7 37 37 H 1.09004 * 108.31265 * 215.93199 * 12 10 7 38 38 H 1.09001 * 108.31370 * 333.09834 * 12 10 7 39 39 H 1.08993 * 110.34151 * 56.62777 * 13 12 10 40 40 H 1.09007 * 110.33646 * 178.92155 * 13 12 10 41 41 H 1.09006 * 110.20297 * 189.62259 * 14 13 12 42 42 H 1.09003 * 110.21320 * 311.55612 * 14 13 12 43 43 H 0.96998 * 119.99854 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9884 1.3531 0.0000 4 6 3.4867 1.4432 -0.0659 5 6 4.2132 0.3912 -0.8391 6 1 5.0690 0.1425 -0.2115 7 6 3.4940 -0.9378 -1.0540 8 1 3.7688 -1.6111 -0.2419 9 6 1.9891 -0.8263 -1.0735 10 7 3.9832 -1.5099 -2.3088 11 6 4.0400 -2.9759 -2.2321 12 6 3.2247 -1.0802 -3.4628 13 6 3.7850 0.1090 -4.1932 14 6 3.7479 1.2731 -3.1545 15 6 4.8296 0.9360 -2.1148 16 1 5.5059 0.1899 -2.5319 17 6 5.6109 2.1837 -1.7924 18 1 5.1083 3.1384 -1.7449 19 6 6.9674 2.1064 -1.5580 20 7 7.6357 3.1820 -1.2030 21 14 7.8559 0.4738 -1.7445 22 1 8.2316 0.2745 -3.1672 23 1 9.0809 0.4782 -0.9050 24 1 6.9616 -0.6289 -1.3094 25 1 -0.3633 -1.0187 0.1356 26 1 -0.3633 0.6268 0.8144 27 1 -0.3633 0.3919 -0.9501 28 1 1.5721 1.8832 -0.8566 29 1 1.6516 1.8527 0.9083 30 1 3.8665 1.4275 0.9556 31 1 3.7435 2.4106 -0.4973 32 1 1.6813 -0.3974 -2.0272 33 1 1.5617 -1.8250 -0.9842 34 1 3.0424 -3.3683 -2.0346 35 1 4.4073 -3.3752 -3.1775 36 1 4.7128 -3.2718 -1.4272 37 1 3.1631 -1.9141 -4.1620 38 1 2.2144 -0.8338 -3.1362 39 1 4.8104 -0.0872 -4.5061 40 1 3.1638 0.3509 -5.0558 41 1 3.9769 2.2205 -3.6426 42 1 2.7690 1.3211 -2.6773 43 1 8.5899 3.1275 -1.0377 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260404547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:02 Heat of formation + Delta-G solvation = 33.452673 kcal Electronic energy + Delta-G solvation = -21069.014422 eV Core-core repulsion = 18342.850735 eV Total energy + Delta-G solvation = -2726.163687 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.26320 -36.80628 -34.93033 -32.62621 -31.91692 -29.91922 -28.75132 -26.18601 -25.22712 -24.45221 -23.00785 -22.44237 -20.61660 -19.02564 -17.41968 -16.48263 -16.17381 -15.49552 -15.17857 -14.80712 -14.13924 -13.97629 -13.73494 -13.45323 -13.08921 -12.66649 -12.45386 -12.22582 -12.11379 -11.88424 -11.71054 -11.54192 -11.30843 -11.01538 -10.86923 -10.71563 -10.39237 -10.33003 -9.95352 -9.78835 -9.49875 -9.11902 -8.90007 -8.60296 -8.33290 -7.92078 -7.52498 -5.94513 -3.91597 3.42908 3.50220 3.61678 4.05448 4.41121 4.58333 5.07358 5.22323 5.31897 5.33695 5.39858 5.48752 5.51299 5.60034 5.65949 5.74268 5.86859 5.89213 5.92674 6.01059 6.05006 6.09413 6.10280 6.19060 6.25008 6.34104 6.41442 6.54610 6.67178 6.89734 6.96762 7.10226 7.22561 7.32710 7.34615 7.51073 7.59118 7.66965 7.83163 7.86599 8.00555 8.69127 9.11498 9.71481 11.18551 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021031 B = 0.010079 C = 0.008406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.018784 B = 2777.320369 C = 3330.197503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.550 5.550 3 C 0.075 3.925 4 C -0.103 4.103 5 C -0.061 4.061 6 H 0.045 0.955 7 C 0.105 3.895 8 H 0.066 0.934 9 C 0.037 3.963 10 N -0.535 5.535 11 C 0.032 3.968 12 C 0.049 3.951 13 C -0.120 4.120 14 C -0.106 4.106 15 C 0.027 3.973 16 H 0.054 0.946 17 C -0.505 4.505 18 H 0.069 0.931 19 C 0.069 3.931 20 N -0.907 5.907 21 Si 0.873 3.127 22 H -0.280 1.280 23 H -0.298 1.298 24 H -0.253 1.253 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.020 0.980 28 H 0.018 0.982 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.017 0.983 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.040 0.960 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.116 -9.549 -1.102 15.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.275 5.275 3 C -0.053 4.053 4 C -0.141 4.141 5 C -0.081 4.081 6 H 0.063 0.937 7 C -0.004 4.004 8 H 0.084 0.916 9 C -0.092 4.092 10 N -0.258 5.258 11 C -0.116 4.116 12 C -0.079 4.079 13 C -0.158 4.158 14 C -0.144 4.144 15 C 0.008 3.992 16 H 0.072 0.928 17 C -0.543 4.543 18 H 0.087 0.913 19 C -0.132 4.132 20 N -0.546 5.546 21 Si 0.701 3.299 22 H -0.206 1.206 23 H -0.225 1.225 24 H -0.177 1.177 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.039 0.961 28 H 0.036 0.964 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.291 -9.526 -0.692 14.789 hybrid contribution -0.388 -0.803 -0.587 1.067 sum -11.680 -10.329 -1.278 15.644 Atomic orbital electron populations 1.22268 0.87448 1.01597 1.00032 1.59611 1.06549 1.14150 1.47222 1.21113 0.97239 0.87343 0.99586 1.20301 0.91272 1.02353 1.00152 1.20167 0.96637 0.91169 1.00167 0.93688 1.21010 0.90884 0.98185 0.90292 0.91607 1.21893 0.97653 0.96738 0.92931 1.60362 1.55673 1.07190 1.02590 1.22424 0.99219 0.87885 1.02093 1.21381 0.96611 0.98033 0.91837 1.21879 1.00963 0.96033 0.96973 1.22485 0.98720 0.96475 0.96690 1.19159 0.93722 0.96078 0.90232 0.92775 1.21170 0.92581 0.93744 1.46779 0.91306 1.25068 0.97677 0.95931 0.94480 1.69926 1.08388 1.28628 1.47637 0.86906 0.78928 0.86004 0.78098 1.20649 1.22481 1.17666 0.92020 0.91584 0.96130 0.96371 0.91849 0.93618 0.88996 0.93564 0.92461 0.96412 0.91909 0.91734 0.93556 0.93162 0.91447 0.92744 0.92513 0.94133 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.55 60.07 0.57 1.00 16 2 N -0.55 -8.49 4.84 -249.17 -1.21 -9.70 16 3 C 0.07 1.24 5.10 -6.25 -0.03 1.21 16 4 C -0.10 -2.03 4.82 -29.87 -0.14 -2.18 16 5 C -0.06 -1.28 1.64 -93.19 -0.15 -1.44 16 6 H 0.04 1.05 7.22 -51.93 -0.38 0.68 16 7 C 0.10 1.86 2.33 -69.26 -0.16 1.70 16 8 H 0.07 1.18 7.61 -51.92 -0.40 0.78 16 9 C 0.04 0.57 4.15 -5.83 -0.02 0.55 16 10 N -0.54 -9.19 3.18 -240.38 -0.76 -9.95 16 11 C 0.03 0.45 9.16 60.07 0.55 1.00 16 12 C 0.05 0.77 4.77 -6.35 -0.03 0.74 16 13 C -0.12 -2.07 6.15 -26.39 -0.16 -2.23 16 14 C -0.11 -2.12 5.39 -24.69 -0.13 -2.26 16 15 C 0.03 0.62 1.02 -91.98 -0.09 0.53 16 16 H 0.05 1.31 3.51 -51.93 -0.18 1.13 16 17 C -0.51 -13.76 7.11 -34.44 -0.24 -14.01 16 18 H 0.07 2.04 7.43 -52.49 -0.39 1.65 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 20 N -0.91 -27.86 13.96 55.43 0.77 -27.09 16 21 Si 0.87 22.17 26.56 -169.99 -4.51 17.66 16 22 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 24 H -0.25 -6.22 6.57 56.52 0.37 -5.85 16 25 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 26 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 27 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.02 0.30 7.63 -51.93 -0.40 -0.09 16 29 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 30 H 0.04 0.91 8.10 -51.93 -0.42 0.49 16 31 H 0.09 2.04 5.85 -51.93 -0.30 1.73 16 32 H 0.05 0.75 4.22 -51.93 -0.22 0.53 16 33 H 0.06 0.82 8.03 -51.93 -0.42 0.40 16 34 H 0.02 0.22 8.08 -51.92 -0.42 -0.20 16 35 H 0.06 0.80 7.87 -51.93 -0.41 0.39 16 36 H 0.06 0.90 8.02 -51.93 -0.42 0.48 16 37 H 0.05 0.64 7.36 -51.93 -0.38 0.26 16 38 H 0.05 0.77 4.18 -51.93 -0.22 0.56 16 39 H 0.07 1.25 7.71 -51.93 -0.40 0.85 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 1.21 7.72 -51.93 -0.40 0.81 16 42 H 0.04 0.78 5.39 -51.93 -0.28 0.50 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 300.82 15.07 4.53 4.53 Total: -1.00 -29.70 300.82 -8.63 -38.32 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -7.30 Total: -0.27 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -0.15 Total: -13.51 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -1.20 Total: -46.74 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.51 Total: 17.66 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.70 -8.63 -38.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260404547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.777 kcal (2) G-P(sol) polarization free energy of solvation -29.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds