Wall clock time and date at job start Mon Mar 30 2020 04:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.44934 * 110.99984 * 2 1 4 4 C 1.50246 * 114.41543 * 182.76026 * 3 2 1 5 5 C 1.49409 * 117.73567 * 33.06602 * 4 3 2 6 6 H 1.08998 * 104.14615 * 222.74874 * 5 4 3 7 7 C 1.52637 * 117.17876 * 337.70630 * 5 4 3 8 8 H 1.09008 * 108.30570 * 268.07295 * 7 5 4 9 9 C 1.45105 * 111.00050 * 232.41524 * 2 1 3 10 10 N 1.46326 * 107.67493 * 151.23123 * 7 5 4 11 11 C 1.46902 * 110.99742 * 145.66281 * 10 7 5 12 12 C 1.44628 * 113.12247 * 271.20906 * 10 7 5 13 13 C 1.50387 * 115.28640 * 94.42607 * 12 10 7 14 14 C 1.56065 * 104.93396 * 297.76881 * 13 12 10 15 15 C 1.51795 * 112.31397 * 110.48847 * 5 4 3 16 16 H 1.08998 * 109.14058 * 168.76047 * 15 5 4 17 17 C 1.50704 * 109.14095 * 49.63606 * 15 5 4 18 18 H 1.07999 * 119.99788 * 275.09237 * 17 15 5 19 19 C 1.37871 * 120.00039 * 95.08375 * 17 15 5 20 20 N 1.31515 * 120.00010 * 183.82455 * 19 17 15 21 21 Si 1.86804 * 120.00069 * 3.82266 * 19 17 15 22 22 H 1.48496 * 109.46792 * 84.86012 * 21 19 17 23 23 H 1.48502 * 109.47259 * 204.85882 * 21 19 17 24 24 H 1.48495 * 109.47031 * 324.85796 * 21 19 17 25 25 H 1.08997 * 109.46778 * 187.58135 * 1 2 3 26 26 H 1.09004 * 109.46912 * 307.58350 * 1 2 3 27 27 H 1.09003 * 109.46837 * 67.58469 * 1 2 3 28 28 H 1.09001 * 108.49253 * 304.03806 * 3 2 1 29 29 H 1.09000 * 108.49534 * 61.48277 * 3 2 1 30 30 H 1.08996 * 107.79050 * 270.98049 * 4 3 2 31 31 H 1.08996 * 107.79084 * 155.15591 * 4 3 2 32 32 H 1.09000 * 108.78638 * 63.25128 * 9 2 1 33 33 H 1.09001 * 108.70134 * 304.97846 * 9 2 1 34 34 H 1.09008 * 109.47090 * 60.00757 * 11 10 7 35 35 H 1.09001 * 109.46872 * 180.02562 * 11 10 7 36 36 H 1.09001 * 109.47455 * 300.00151 * 11 10 7 37 37 H 1.09004 * 108.31265 * 215.93199 * 12 10 7 38 38 H 1.09001 * 108.31370 * 333.09834 * 12 10 7 39 39 H 1.08993 * 110.34151 * 56.62777 * 13 12 10 40 40 H 1.09007 * 110.33646 * 178.92155 * 13 12 10 41 41 H 1.09006 * 110.20297 * 189.62259 * 14 13 12 42 42 H 1.09003 * 110.21320 * 311.55612 * 14 13 12 43 43 H 0.96998 * 119.99854 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9884 1.3531 0.0000 4 6 3.4867 1.4432 -0.0659 5 6 4.2132 0.3912 -0.8391 6 1 5.0690 0.1425 -0.2115 7 6 3.4940 -0.9378 -1.0540 8 1 3.7688 -1.6111 -0.2419 9 6 1.9891 -0.8263 -1.0735 10 7 3.9832 -1.5099 -2.3088 11 6 4.0400 -2.9759 -2.2321 12 6 3.2247 -1.0802 -3.4628 13 6 3.7850 0.1090 -4.1932 14 6 3.7479 1.2731 -3.1545 15 6 4.8296 0.9360 -2.1148 16 1 5.5059 0.1899 -2.5319 17 6 5.6109 2.1837 -1.7924 18 1 5.1083 3.1384 -1.7449 19 6 6.9674 2.1064 -1.5580 20 7 7.6357 3.1820 -1.2030 21 14 7.8559 0.4738 -1.7445 22 1 8.2316 0.2745 -3.1672 23 1 9.0809 0.4782 -0.9050 24 1 6.9616 -0.6289 -1.3094 25 1 -0.3633 -1.0187 0.1356 26 1 -0.3633 0.6268 0.8144 27 1 -0.3633 0.3919 -0.9501 28 1 1.5721 1.8832 -0.8566 29 1 1.6516 1.8527 0.9083 30 1 3.8665 1.4275 0.9556 31 1 3.7435 2.4106 -0.4973 32 1 1.6813 -0.3974 -2.0272 33 1 1.5617 -1.8250 -0.9842 34 1 3.0424 -3.3683 -2.0346 35 1 4.4073 -3.3752 -3.1775 36 1 4.7128 -3.2718 -1.4272 37 1 3.1631 -1.9141 -4.1620 38 1 2.2144 -0.8338 -3.1362 39 1 4.8104 -0.0872 -4.5061 40 1 3.1638 0.3509 -5.0558 41 1 3.9769 2.2205 -3.6426 42 1 2.7690 1.3211 -2.6773 43 1 8.5899 3.1275 -1.0377 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260404547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:01 Heat of formation + Delta-G solvation = 13.084668 kcal Electronic energy + Delta-G solvation = -21069.897645 eV Core-core repulsion = 18342.850735 eV Total energy + Delta-G solvation = -2727.046910 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.66461 -38.04654 -36.59061 -34.04180 -33.99626 -31.30056 -30.21770 -27.41855 -26.93842 -25.74976 -24.38406 -24.05826 -21.99862 -20.62895 -19.25445 -18.19364 -17.46668 -16.94272 -16.47986 -16.35010 -15.78427 -15.54895 -15.08284 -14.78159 -14.52813 -14.33748 -13.85967 -13.77036 -13.48873 -13.20802 -13.01682 -12.85389 -12.74919 -12.66768 -12.47462 -12.21457 -11.95777 -11.84762 -11.66854 -11.48543 -11.08940 -10.92093 -10.74775 -10.51577 -10.37122 -9.14888 -8.76618 -8.20950 -6.19590 1.36414 1.38821 1.55277 2.42330 2.86103 3.15744 3.21195 3.80910 3.96043 4.06690 4.15464 4.23815 4.26221 4.43714 4.49006 4.52519 4.57942 4.62884 4.65911 4.72447 4.73708 4.81326 4.85405 4.94132 5.02104 5.05475 5.07243 5.10506 5.15732 5.27891 5.40783 5.45250 5.57315 5.69019 5.79680 5.87739 6.05263 6.19457 6.25150 6.41728 6.47877 6.54066 6.90096 7.45447 8.95831 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021031 B = 0.010079 C = 0.008406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.018784 B = 2777.320369 C = 3330.197503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.560 5.560 3 C 0.084 3.916 4 C -0.097 4.097 5 C -0.055 4.055 6 H 0.008 0.992 7 C 0.111 3.889 8 H 0.064 0.936 9 C 0.043 3.957 10 N -0.563 5.563 11 C 0.033 3.967 12 C 0.048 3.952 13 C -0.115 4.115 14 C -0.102 4.102 15 C 0.032 3.968 16 H 0.047 0.953 17 C -0.495 4.495 18 H 0.030 0.970 19 C 0.009 3.991 20 N -0.957 5.957 21 Si 0.935 3.065 22 H -0.274 1.274 23 H -0.300 1.300 24 H -0.240 1.240 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.025 0.975 28 H 0.017 0.983 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.083 0.917 41 H 0.032 0.968 42 H 0.050 0.950 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.530 -12.597 -1.860 19.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.285 5.285 3 C -0.044 4.044 4 C -0.135 4.135 5 C -0.075 4.075 6 H 0.026 0.974 7 C 0.003 3.997 8 H 0.082 0.918 9 C -0.085 4.085 10 N -0.287 5.287 11 C -0.114 4.114 12 C -0.079 4.079 13 C -0.153 4.153 14 C -0.140 4.140 15 C 0.013 3.987 16 H 0.065 0.935 17 C -0.533 4.533 18 H 0.048 0.952 19 C -0.187 4.187 20 N -0.598 5.598 21 Si 0.761 3.239 22 H -0.199 1.199 23 H -0.228 1.228 24 H -0.164 1.164 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.044 0.956 28 H 0.035 0.965 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.051 0.949 42 H 0.069 0.931 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.735 -12.597 -1.460 18.694 hybrid contribution 0.326 0.242 -0.330 0.523 sum -13.409 -12.355 -1.790 18.321 Atomic orbital electron populations 1.22360 0.84930 1.03181 1.00779 1.59625 1.08703 1.12867 1.47349 1.20914 0.94389 0.88792 1.00299 1.20167 0.94150 1.00266 0.98941 1.20062 0.96137 0.93272 0.98019 0.97372 1.20801 0.92319 0.95573 0.91038 0.91787 1.21820 0.95748 0.98005 0.92961 1.60222 1.56577 1.09380 1.02503 1.22453 1.00474 0.85689 1.02788 1.21369 0.96548 0.98185 0.91812 1.21868 1.00930 0.95286 0.97175 1.22347 0.97943 0.96936 0.96789 1.19093 0.94164 0.93424 0.92042 0.93542 1.21506 0.92758 0.94246 1.44764 0.95221 1.25855 0.98761 0.99156 0.94907 1.70074 1.08619 1.30922 1.50216 0.85909 0.77605 0.82274 0.78136 1.19941 1.22765 1.16378 0.90117 0.90535 0.95605 0.96525 0.90424 0.94678 0.92475 0.93527 0.90044 0.94248 0.90518 0.92259 0.90714 0.92055 0.93069 0.89833 0.94894 0.93137 0.93170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 9.55 127.69 1.22 1.93 16 2 N -0.56 -15.55 4.84 -942.22 -4.56 -20.11 16 3 C 0.08 2.67 5.10 85.78 0.44 3.11 16 4 C -0.10 -3.93 4.82 28.56 0.14 -3.79 16 5 C -0.05 -2.30 1.64 -12.46 -0.02 -2.32 16 6 H 0.01 0.37 7.22 -2.39 -0.02 0.35 16 7 C 0.11 3.71 2.33 44.23 0.10 3.81 16 8 H 0.06 2.15 7.61 -2.38 -0.02 2.13 16 9 C 0.04 1.19 4.15 85.96 0.36 1.55 16 10 N -0.56 -17.61 3.18 -914.44 -2.90 -20.51 16 11 C 0.03 0.80 9.16 127.69 1.17 1.97 16 12 C 0.05 1.32 4.77 85.88 0.41 1.73 16 13 C -0.11 -3.65 6.15 30.81 0.19 -3.46 16 14 C -0.10 -4.07 5.39 31.92 0.17 -3.90 16 15 C 0.03 1.47 1.02 -11.67 -0.01 1.46 16 16 H 0.05 2.23 3.51 -2.39 -0.01 2.22 16 17 C -0.49 -28.31 7.11 25.60 0.18 -28.13 16 18 H 0.03 1.88 7.43 -2.91 -0.02 1.86 16 19 C 0.01 0.52 5.47 84.65 0.46 0.98 16 20 N -0.96 -61.63 13.96 21.45 0.30 -61.33 16 21 Si 0.93 47.11 26.56 68.60 1.82 48.93 16 22 H -0.27 -13.40 7.11 99.48 0.71 -12.69 16 23 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 24 H -0.24 -11.51 6.57 99.48 0.65 -10.86 16 25 H 0.08 1.37 8.13 -2.39 -0.02 1.35 16 26 H 0.08 1.40 8.08 -2.38 -0.02 1.38 16 27 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.02 0.53 7.63 -2.39 -0.02 0.52 16 29 H 0.08 2.25 8.12 -2.39 -0.02 2.23 16 30 H 0.03 1.44 8.10 -2.39 -0.02 1.43 16 31 H 0.06 2.68 5.85 -2.39 -0.01 2.67 16 32 H 0.05 1.31 4.22 -2.39 -0.01 1.30 16 33 H 0.08 1.90 8.03 -2.39 -0.02 1.88 16 34 H 0.04 0.78 8.08 -2.38 -0.02 0.76 16 35 H 0.08 1.62 7.87 -2.39 -0.02 1.60 16 36 H 0.06 1.47 8.02 -2.39 -0.02 1.45 16 37 H 0.07 1.68 7.36 -2.39 -0.02 1.66 16 38 H 0.06 1.59 4.18 -2.39 -0.01 1.58 16 39 H 0.05 1.80 7.71 -2.39 -0.02 1.78 16 40 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 41 H 0.03 1.43 7.72 -2.38 -0.02 1.41 16 42 H 0.05 1.88 5.39 -2.39 -0.01 1.87 16 43 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -67.32 300.82 0.39 -66.93 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.92 Total: 11.16 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: 4.81 Total: -25.07 kcal Atomic # 7 Polarization: -94.79 SS G_CDS: -7.16 Total: -101.95 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 1.82 Total: 48.93 kcal Total: -67.32 0.39 -66.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260404547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.018 kcal (2) G-P(sol) polarization free energy of solvation -67.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds