Wall clock time and date at job start Mon Mar 30 2020 03:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47951 * 111.00155 * 2 1 4 4 C 1.53944 * 86.18030 * 222.41881 * 3 2 1 5 5 C 1.52999 * 113.73161 * 138.08077 * 4 3 2 6 6 C 1.53006 * 109.46626 * 175.00058 * 5 4 3 7 7 N 1.46902 * 109.46626 * 179.97438 * 6 5 4 8 8 C 1.47434 * 111.00091 * 69.87375 * 7 6 5 9 9 C 1.54325 * 107.23276 * 123.25545 * 8 7 6 10 10 C 1.55141 * 103.01679 * 22.28467 * 9 8 7 11 11 H 1.08995 * 110.99191 * 82.44010 * 10 9 8 12 12 C 1.53003 * 110.98596 * 206.21642 * 10 9 8 13 13 C 1.50696 * 109.47604 * 293.54411 * 12 10 9 14 14 H 1.08005 * 119.99370 * 0.02562 * 13 12 10 15 15 C 1.37870 * 120.00580 * 179.97438 * 13 12 10 16 16 N 1.31517 * 119.99685 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00339 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47016 * 90.00212 * 17 15 13 19 19 H 1.48500 * 109.47272 * 210.00410 * 17 15 13 20 20 H 1.48495 * 109.47139 * 330.00441 * 17 15 13 21 21 C 1.47846 * 110.99766 * 190.71621 * 7 6 5 22 22 C 1.47960 * 110.99659 * 260.63626 * 2 1 3 23 23 H 1.08995 * 109.47698 * 59.99989 * 1 2 3 24 24 H 1.09001 * 109.47447 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46954 * 299.99888 * 1 2 3 26 26 H 1.09001 * 113.76150 * 108.10560 * 3 2 1 27 27 H 1.09002 * 113.76147 * 336.73304 * 3 2 1 28 28 H 1.08999 * 113.73190 * 269.25454 * 4 3 2 29 29 H 1.08993 * 109.47839 * 55.00127 * 5 4 3 30 30 H 1.09000 * 109.47160 * 294.99689 * 5 4 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 6 5 4 32 32 H 1.09001 * 109.46801 * 59.99811 * 6 5 4 33 33 H 1.09001 * 109.89078 * 242.65466 * 8 7 6 34 34 H 1.08996 * 109.89258 * 3.68803 * 8 7 6 35 35 H 1.09002 * 110.70551 * 140.66271 * 9 8 7 36 36 H 1.08993 * 110.70446 * 263.72410 * 9 8 7 37 37 H 1.09000 * 109.47024 * 53.54780 * 12 10 9 38 38 H 1.09003 * 109.47132 * 173.54371 * 12 10 9 39 39 H 0.96998 * 120.00207 * 179.97438 * 16 15 13 40 40 H 1.09003 * 110.37517 * 332.47008 * 21 7 6 41 41 H 1.09007 * 110.37420 * 94.80283 * 21 7 6 42 42 H 1.08996 * 113.76322 * 23.27212 * 22 2 1 43 43 H 1.08998 * 113.75909 * 251.89915 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3812 0.0000 4 6 3.0211 0.8791 -1.0361 5 6 3.2611 1.8569 -2.1882 6 6 4.3768 1.3211 -3.0877 7 7 4.6068 2.2596 -4.1941 8 6 5.2259 3.5067 -3.7092 9 6 6.5417 3.6985 -4.4923 10 6 6.3126 2.8534 -5.7729 11 1 5.7408 3.4131 -6.5130 12 6 7.6426 2.3754 -6.3592 13 6 8.4269 3.5614 -6.8583 14 1 8.0178 4.5568 -6.7661 15 6 9.6670 3.3762 -7.4316 16 7 10.1653 2.1642 -7.5433 17 14 10.6389 4.8463 -8.0508 18 1 11.4975 5.3682 -6.9574 19 1 11.4909 4.4306 -9.1938 20 1 9.7008 5.9089 -8.4935 21 6 5.4896 1.6636 -5.2195 22 6 1.9991 -0.2247 -1.3629 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 2.4461 1.6801 0.9482 27 1 1.3010 2.1197 -0.3941 28 1 3.9458 0.5067 -0.5954 29 1 3.5527 2.8272 -1.7865 30 1 2.3456 1.9647 -2.7699 31 1 5.2923 1.2132 -2.5059 32 1 4.0851 0.3507 -3.4894 33 1 4.5584 4.3483 -3.8941 34 1 5.4347 3.4266 -2.6424 35 1 6.6903 4.7484 -4.7448 36 1 7.3887 3.3172 -3.9220 37 1 8.2150 1.8596 -5.5883 38 1 7.4503 1.6926 -7.1869 39 1 11.0376 2.0337 -7.9470 40 1 6.1496 0.9229 -4.7680 41 1 4.8965 1.2103 -6.0139 42 1 1.3010 0.0440 -2.1556 43 1 2.4459 -1.2090 -1.5036 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260429164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:06 Heat of formation + Delta-G solvation = 19.960029 kcal Electronic energy + Delta-G solvation = -18521.419783 eV Core-core repulsion = 15794.671011 eV Total energy + Delta-G solvation = -2726.748772 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.22460 -38.58083 -34.36119 -32.79907 -31.14889 -29.16676 -28.41425 -26.36259 -26.22552 -23.93223 -22.48989 -21.87789 -20.11431 -19.78820 -19.07394 -16.39394 -16.12157 -15.78832 -15.64915 -15.09860 -14.77492 -14.29990 -13.99445 -13.58860 -13.06565 -12.96295 -12.90636 -12.29105 -12.19363 -12.04159 -11.78150 -11.46744 -11.30218 -11.24411 -10.99014 -10.87627 -10.68893 -10.49090 -10.45388 -10.42576 -10.12166 -9.67569 -9.24919 -9.07496 -8.98657 -8.34697 -7.96050 -5.99399 -4.01189 3.31802 3.38291 3.41595 3.69739 4.12519 4.30997 4.46376 4.63663 4.81017 5.00211 5.12237 5.18415 5.20864 5.22093 5.32754 5.36498 5.42523 5.47021 5.52391 5.55625 5.61607 5.69450 5.75068 5.88507 5.94613 6.01286 6.06364 6.14625 6.22877 6.28381 6.45962 6.56758 6.75667 6.81878 6.97048 7.04267 7.37369 7.45567 7.66503 7.81393 7.99909 8.43547 9.05238 9.62677 11.11998 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.064486 B = 0.003188 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.100389 B = 8780.980204 C = 8963.358352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.489 5.489 3 C 0.004 3.996 4 C -0.113 4.113 5 C -0.105 4.105 6 C 0.053 3.947 7 N -0.534 5.534 8 C 0.040 3.960 9 C -0.124 4.124 10 C -0.084 4.084 11 H 0.068 0.932 12 C 0.032 3.968 13 C -0.514 4.514 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.043 3.957 22 C 0.005 3.995 23 H 0.035 0.965 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.046 0.954 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.015 0.985 38 H 0.017 0.983 39 H 0.260 0.740 40 H 0.043 0.957 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.386 -2.247 13.219 21.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.211 5.211 3 C -0.125 4.125 4 C -0.132 4.132 5 C -0.143 4.143 6 C -0.076 4.076 7 N -0.258 5.258 8 C -0.088 4.088 9 C -0.163 4.163 10 C -0.104 4.104 11 H 0.086 0.914 12 C -0.006 4.006 13 C -0.552 4.552 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.084 4.084 22 C -0.124 4.124 23 H 0.053 0.947 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.105 0.895 27 H 0.088 0.912 28 H 0.117 0.883 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.033 0.967 38 H 0.035 0.965 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.592 -2.700 13.482 21.549 hybrid contribution 1.022 1.057 -0.594 1.585 sum -15.570 -1.643 12.889 20.279 Atomic orbital electron populations 1.22857 0.89886 1.02304 1.00976 1.68455 1.08926 1.18782 1.24895 1.24003 0.97133 0.91309 1.00072 1.22990 0.98245 0.96054 0.95943 1.21588 0.99525 0.98220 0.95003 1.22218 0.97035 0.96125 0.92188 1.63592 1.46160 1.04688 1.11362 1.22874 0.95631 0.92813 0.97456 1.22685 0.95664 1.01151 0.96766 1.22371 0.98197 0.94018 0.95769 0.91350 1.19060 0.89390 0.96445 0.95668 1.21206 1.01908 0.93423 1.38689 0.92657 1.25023 0.97775 0.95610 0.96123 1.69963 1.18104 1.20510 1.45056 0.86619 0.80067 0.83010 0.78464 1.20744 1.21268 1.19885 1.23158 0.93675 0.97660 0.93887 1.24101 0.97098 1.00452 0.90749 0.94686 0.91267 0.91528 0.89514 0.91191 0.88349 0.91600 0.91288 0.94866 0.91252 0.91451 0.93578 0.91326 0.91797 0.96670 0.96485 0.93048 0.93851 0.91078 0.90986 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.09 9.64 60.06 0.58 0.49 16 2 N -0.49 -4.71 6.56 -246.60 -1.62 -6.33 16 3 C 0.00 0.03 7.55 -2.77 -0.02 0.01 16 4 C -0.11 -1.06 3.84 -89.68 -0.34 -1.40 16 5 C -0.11 -1.10 5.10 -26.73 -0.14 -1.24 16 6 C 0.05 0.68 4.53 -3.82 -0.02 0.66 16 7 N -0.53 -8.31 5.16 -231.25 -1.19 -9.50 16 8 C 0.04 0.62 6.21 -2.84 -0.02 0.60 16 9 C -0.12 -2.31 5.94 -24.90 -0.15 -2.46 16 10 C -0.08 -1.74 3.01 -88.48 -0.27 -2.01 16 11 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 12 C 0.03 0.81 4.49 -27.88 -0.13 0.69 16 13 C -0.51 -14.35 8.69 -34.45 -0.30 -14.65 16 14 H 0.06 1.50 7.70 -52.48 -0.40 1.10 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 17 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 21 C 0.04 0.77 6.15 -2.30 -0.01 0.75 16 22 C 0.00 0.04 7.52 -2.77 -0.02 0.02 16 23 H 0.03 0.26 7.62 -51.93 -0.40 -0.13 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 26 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.57 7.88 -51.93 -0.41 0.16 16 28 H 0.10 0.96 8.13 -51.93 -0.42 0.54 16 29 H 0.07 0.70 7.14 -51.93 -0.37 0.33 16 30 H 0.07 0.74 7.84 -51.93 -0.41 0.34 16 31 H 0.03 0.45 7.96 -51.93 -0.41 0.03 16 32 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.65 6.91 -51.93 -0.36 0.29 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.06 1.25 8.02 -51.93 -0.42 0.84 16 37 H 0.01 0.41 8.11 -51.93 -0.42 -0.01 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.04 0.79 7.71 -51.93 -0.40 0.39 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.07 0.64 7.37 -51.93 -0.38 0.25 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 336.02 15.07 5.06 5.06 Total: -1.00 -29.54 336.02 -11.12 -40.66 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -8.16 Total: -3.29 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -0.93 Total: -17.03 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: -2.07 Total: -42.03 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.54 -11.12 -40.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260429164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.618 kcal (2) G-P(sol) polarization free energy of solvation -29.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds