Wall clock time and date at job start Mon Mar 30 2020 03:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47951 * 111.00155 * 2 1 4 4 C 1.53944 * 86.18030 * 222.41881 * 3 2 1 5 5 C 1.52999 * 113.73161 * 138.08077 * 4 3 2 6 6 C 1.53006 * 109.46626 * 175.00058 * 5 4 3 7 7 N 1.46902 * 109.46626 * 179.97438 * 6 5 4 8 8 C 1.47434 * 111.00091 * 69.87375 * 7 6 5 9 9 C 1.54325 * 107.23276 * 123.25545 * 8 7 6 10 10 C 1.55141 * 103.01679 * 22.28467 * 9 8 7 11 11 H 1.08995 * 110.99191 * 82.44010 * 10 9 8 12 12 C 1.53003 * 110.98596 * 206.21642 * 10 9 8 13 13 C 1.50696 * 109.47604 * 293.54411 * 12 10 9 14 14 H 1.08005 * 119.99370 * 0.02562 * 13 12 10 15 15 C 1.37870 * 120.00580 * 179.97438 * 13 12 10 16 16 N 1.31517 * 119.99685 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00339 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47016 * 90.00212 * 17 15 13 19 19 H 1.48500 * 109.47272 * 210.00410 * 17 15 13 20 20 H 1.48495 * 109.47139 * 330.00441 * 17 15 13 21 21 C 1.47846 * 110.99766 * 190.71621 * 7 6 5 22 22 C 1.47960 * 110.99659 * 260.63626 * 2 1 3 23 23 H 1.08995 * 109.47698 * 59.99989 * 1 2 3 24 24 H 1.09001 * 109.47447 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46954 * 299.99888 * 1 2 3 26 26 H 1.09001 * 113.76150 * 108.10560 * 3 2 1 27 27 H 1.09002 * 113.76147 * 336.73304 * 3 2 1 28 28 H 1.08999 * 113.73190 * 269.25454 * 4 3 2 29 29 H 1.08993 * 109.47839 * 55.00127 * 5 4 3 30 30 H 1.09000 * 109.47160 * 294.99689 * 5 4 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 6 5 4 32 32 H 1.09001 * 109.46801 * 59.99811 * 6 5 4 33 33 H 1.09001 * 109.89078 * 242.65466 * 8 7 6 34 34 H 1.08996 * 109.89258 * 3.68803 * 8 7 6 35 35 H 1.09002 * 110.70551 * 140.66271 * 9 8 7 36 36 H 1.08993 * 110.70446 * 263.72410 * 9 8 7 37 37 H 1.09000 * 109.47024 * 53.54780 * 12 10 9 38 38 H 1.09003 * 109.47132 * 173.54371 * 12 10 9 39 39 H 0.96998 * 120.00207 * 179.97438 * 16 15 13 40 40 H 1.09003 * 110.37517 * 332.47008 * 21 7 6 41 41 H 1.09007 * 110.37420 * 94.80283 * 21 7 6 42 42 H 1.08996 * 113.76322 * 23.27212 * 22 2 1 43 43 H 1.08998 * 113.75909 * 251.89915 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3812 0.0000 4 6 3.0211 0.8791 -1.0361 5 6 3.2611 1.8569 -2.1882 6 6 4.3768 1.3211 -3.0877 7 7 4.6068 2.2596 -4.1941 8 6 5.2259 3.5067 -3.7092 9 6 6.5417 3.6985 -4.4923 10 6 6.3126 2.8534 -5.7729 11 1 5.7408 3.4131 -6.5130 12 6 7.6426 2.3754 -6.3592 13 6 8.4269 3.5614 -6.8583 14 1 8.0178 4.5568 -6.7661 15 6 9.6670 3.3762 -7.4316 16 7 10.1653 2.1642 -7.5433 17 14 10.6389 4.8463 -8.0508 18 1 11.4975 5.3682 -6.9574 19 1 11.4909 4.4306 -9.1938 20 1 9.7008 5.9089 -8.4935 21 6 5.4896 1.6636 -5.2195 22 6 1.9991 -0.2247 -1.3629 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 2.4461 1.6801 0.9482 27 1 1.3010 2.1197 -0.3941 28 1 3.9458 0.5067 -0.5954 29 1 3.5527 2.8272 -1.7865 30 1 2.3456 1.9647 -2.7699 31 1 5.2923 1.2132 -2.5059 32 1 4.0851 0.3507 -3.4894 33 1 4.5584 4.3483 -3.8941 34 1 5.4347 3.4266 -2.6424 35 1 6.6903 4.7484 -4.7448 36 1 7.3887 3.3172 -3.9220 37 1 8.2150 1.8596 -5.5883 38 1 7.4503 1.6926 -7.1869 39 1 11.0376 2.0337 -7.9470 40 1 6.1496 0.9229 -4.7680 41 1 4.8965 1.2103 -6.0139 42 1 1.3010 0.0440 -2.1556 43 1 2.4459 -1.2090 -1.5036 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260429164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:06 Heat of formation + Delta-G solvation = 0.203203 kcal Electronic energy + Delta-G solvation = -18522.276503 eV Core-core repulsion = 15794.671011 eV Total energy + Delta-G solvation = -2727.605493 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.96981 -39.92636 -35.90266 -34.45642 -32.49042 -30.59285 -29.54381 -27.88594 -27.04277 -25.09774 -24.27613 -22.81780 -21.41500 -20.69281 -20.49884 -18.47318 -17.09701 -16.87398 -16.74049 -16.40092 -15.99017 -15.58084 -15.01362 -14.77184 -14.45130 -14.18964 -13.98415 -13.77372 -13.60857 -13.55133 -12.92829 -12.75061 -12.61764 -12.53764 -12.24865 -12.20988 -12.08481 -11.96243 -11.81563 -11.45925 -11.34230 -11.24367 -11.12470 -10.95814 -10.54511 -9.75911 -9.24042 -8.18953 -6.28962 1.39790 1.40775 1.51887 2.41033 2.98420 3.07888 3.14439 3.50982 3.78854 3.89147 3.95463 4.16848 4.19165 4.29093 4.35599 4.43884 4.44366 4.53045 4.58805 4.62486 4.67482 4.74632 4.79605 4.83121 4.86449 4.96134 4.97225 5.01842 5.12459 5.16476 5.21037 5.28664 5.37113 5.38844 5.46179 5.50190 5.74338 5.84704 6.02207 6.10569 6.21219 6.29863 6.86891 7.39864 8.92998 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.064486 B = 0.003188 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.100389 B = 8780.980204 C = 8963.358352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.507 5.507 3 C 0.008 3.992 4 C -0.109 4.109 5 C -0.092 4.092 6 C 0.052 3.948 7 N -0.533 5.533 8 C 0.049 3.951 9 C -0.122 4.122 10 C -0.084 4.084 11 H 0.065 0.935 12 C 0.039 3.961 13 C -0.530 4.530 14 H 0.060 0.940 15 C -0.002 4.002 16 N -0.936 5.936 17 Si 0.962 3.038 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.263 1.263 21 C 0.052 3.948 22 C 0.005 3.995 23 H 0.040 0.960 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.047 0.953 37 H -0.012 1.012 38 H -0.011 1.011 39 H 0.262 0.738 40 H 0.033 0.967 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.583 -0.948 14.069 22.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.230 5.230 3 C -0.121 4.121 4 C -0.129 4.129 5 C -0.130 4.130 6 C -0.077 4.077 7 N -0.257 5.257 8 C -0.078 4.078 9 C -0.160 4.160 10 C -0.103 4.103 11 H 0.083 0.917 12 C 0.002 3.998 13 C -0.568 4.568 14 H 0.079 0.921 15 C -0.200 4.200 16 N -0.576 5.576 17 Si 0.787 3.213 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.187 1.187 21 C -0.075 4.075 22 C -0.124 4.124 23 H 0.058 0.942 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.109 0.891 27 H 0.097 0.903 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.007 0.993 38 H 0.007 0.993 39 H 0.071 0.929 40 H 0.052 0.948 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.810 -1.395 14.347 22.912 hybrid contribution 1.388 0.595 -0.848 1.732 sum -16.422 -0.800 13.499 21.273 Atomic orbital electron populations 1.22883 0.88947 1.02667 1.01548 1.68446 1.10044 1.19390 1.25076 1.24013 0.96870 0.91172 1.00009 1.22911 0.98278 0.95952 0.95744 1.21464 0.98407 0.98421 0.94733 1.22315 0.97757 0.95947 0.91633 1.63641 1.44915 1.05140 1.11981 1.22844 0.93897 0.93227 0.97876 1.22620 0.97081 1.00439 0.95890 1.22192 0.95860 0.95665 0.96588 0.91683 1.18905 0.91681 0.95241 0.94006 1.21602 1.02434 0.94190 1.38545 0.92139 1.25965 0.99044 0.98629 0.96330 1.70100 1.18659 1.22873 1.46014 0.85487 0.78522 0.79339 0.77961 1.19859 1.20911 1.18706 1.22981 0.93550 0.96269 0.94738 1.24108 0.97106 1.00284 0.90876 0.94186 0.91077 0.90857 0.89142 0.90337 0.88846 0.91316 0.91132 0.95382 0.90916 0.89888 0.91771 0.91406 0.93453 0.99339 0.99279 0.92883 0.94817 0.90533 0.90507 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.16 9.64 127.69 1.23 1.07 16 2 N -0.51 -8.88 6.56 -934.12 -6.12 -15.00 16 3 C 0.01 0.12 7.55 86.41 0.65 0.77 16 4 C -0.11 -1.83 3.84 -10.14 -0.04 -1.87 16 5 C -0.09 -1.71 5.10 30.60 0.16 -1.55 16 6 C 0.05 1.24 4.53 86.31 0.39 1.63 16 7 N -0.53 -15.66 5.16 -885.54 -4.57 -20.23 16 8 C 0.05 1.41 6.21 86.65 0.54 1.95 16 9 C -0.12 -4.46 5.94 31.78 0.19 -4.28 16 10 C -0.08 -3.49 3.01 -9.41 -0.03 -3.51 16 11 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 12 C 0.04 2.07 4.49 29.85 0.13 2.21 16 13 C -0.53 -30.01 8.69 25.60 0.22 -29.79 16 14 H 0.06 3.29 7.70 -2.91 -0.02 3.27 16 15 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 16 N -0.94 -57.40 13.29 21.45 0.28 -57.12 16 17 Si 0.96 44.45 29.54 68.60 2.03 46.47 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 20 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 21 C 0.05 1.84 6.15 86.77 0.53 2.38 16 22 C 0.00 0.08 7.52 86.41 0.65 0.73 16 23 H 0.04 0.51 7.62 -2.39 -0.02 0.50 16 24 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 26 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 27 H 0.08 1.07 7.88 -2.39 -0.02 1.05 16 28 H 0.09 1.68 8.13 -2.39 -0.02 1.66 16 29 H 0.07 1.26 7.14 -2.39 -0.02 1.24 16 30 H 0.07 1.32 7.84 -2.39 -0.02 1.30 16 31 H 0.03 0.71 7.96 -2.39 -0.02 0.69 16 32 H 0.07 1.70 8.07 -2.39 -0.02 1.68 16 33 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.06 1.63 6.91 -2.39 -0.02 1.61 16 35 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.05 1.87 8.02 -2.39 -0.02 1.85 16 37 H -0.01 -0.68 8.11 -2.39 -0.02 -0.70 16 38 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 39 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 40 H 0.03 1.24 7.71 -2.39 -0.02 1.22 16 41 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 42 H 0.08 1.20 7.37 -2.39 -0.02 1.18 16 43 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -63.27 336.02 -2.36 -65.63 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.93 Total: 10.19 kcal Atomic # 6 Polarization: -35.04 SS G_CDS: 5.09 Total: -29.94 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -10.41 Total: -92.35 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -63.27 -2.36 -65.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260429164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.832 kcal (2) G-P(sol) polarization free energy of solvation -63.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds