Wall clock time and date at job start Mon Mar 30 2020 03:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47961 * 110.99821 * 2 1 4 4 C 1.53930 * 86.18118 * 222.41415 * 3 2 1 5 5 C 1.53002 * 113.73180 * 138.07461 * 4 3 2 6 6 C 1.53003 * 109.47063 * 175.00007 * 5 4 3 7 7 N 1.46900 * 109.47151 * 180.02562 * 6 5 4 8 8 C 1.47843 * 110.99830 * 69.16048 * 7 6 5 9 9 C 1.54907 * 104.79600 * 146.36388 * 8 7 6 10 10 C 1.55143 * 101.64998 * 322.92839 * 9 8 7 11 11 H 1.08999 * 110.85670 * 277.19730 * 10 9 8 12 12 C 1.52998 * 110.70234 * 154.03645 * 10 9 8 13 13 C 1.50706 * 109.47348 * 71.40079 * 12 10 9 14 14 H 1.08005 * 119.99758 * 359.97438 * 13 12 10 15 15 C 1.37871 * 120.00102 * 179.97438 * 13 12 10 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47483 * 269.99808 * 17 15 13 19 19 H 1.48499 * 109.47134 * 30.00322 * 17 15 13 20 20 H 1.48507 * 109.46904 * 150.00145 * 17 15 13 21 21 C 1.47445 * 110.99837 * 190.00278 * 7 6 5 22 22 C 1.47957 * 110.99984 * 260.64190 * 2 1 3 23 23 H 1.08998 * 109.47190 * 60.00525 * 1 2 3 24 24 H 1.09000 * 109.46876 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47344 * 299.99714 * 1 2 3 26 26 H 1.08999 * 113.76085 * 108.09669 * 3 2 1 27 27 H 1.08998 * 113.75702 * 336.73429 * 3 2 1 28 28 H 1.08997 * 113.73806 * 269.25815 * 4 3 2 29 29 H 1.09000 * 109.46715 * 55.00553 * 5 4 3 30 30 H 1.08997 * 109.47307 * 295.00400 * 5 4 3 31 31 H 1.09000 * 109.46910 * 60.00665 * 6 5 4 32 32 H 1.08991 * 109.47245 * 300.00766 * 6 5 4 33 33 H 1.08996 * 110.37498 * 265.19451 * 8 7 6 34 34 H 1.09003 * 110.37396 * 27.42433 * 8 7 6 35 35 H 1.09004 * 110.98791 * 204.84165 * 9 8 7 36 36 H 1.08999 * 110.99128 * 81.01991 * 9 8 7 37 37 H 1.09001 * 109.47671 * 311.40288 * 12 10 9 38 38 H 1.09006 * 109.47297 * 191.40007 * 12 10 9 39 39 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 40 40 H 1.09004 * 109.88739 * 117.34329 * 21 7 6 41 41 H 1.08994 * 110.02337 * 356.22508 * 21 7 6 42 42 H 1.08994 * 113.76103 * 23.26040 * 22 2 1 43 43 H 1.09000 * 113.75690 * 251.89853 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3814 0.0000 4 6 3.0211 0.8793 -1.0359 5 6 3.2610 1.8570 -2.1881 6 6 4.3768 1.3214 -3.0875 7 7 4.6076 2.2604 -4.1934 8 6 5.2130 3.5172 -3.7037 9 6 6.1457 3.9802 -4.8506 10 6 6.7037 2.6275 -5.3661 11 1 7.5428 2.2956 -4.7548 12 6 7.1172 2.7376 -6.8350 13 6 8.3646 3.5762 -6.9443 14 1 8.8169 3.9897 -6.0549 15 6 8.9284 3.8156 -8.1795 16 7 8.3774 3.3125 -9.2625 17 14 10.4741 4.8557 -8.3148 18 1 10.0977 6.2819 -8.4866 19 1 11.2835 4.7027 -7.0793 20 1 11.2700 4.4093 -9.4865 21 6 5.5018 1.6726 -5.2078 22 6 1.9992 -0.2246 -1.3629 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 2.4459 1.6803 0.9483 27 1 1.3009 2.1197 -0.3941 28 1 3.9458 0.5069 -0.5952 29 1 3.5526 2.8274 -1.7863 30 1 2.3456 1.9648 -2.7698 31 1 4.0853 0.3510 -3.4893 32 1 5.2922 1.2136 -2.5058 33 1 4.4406 4.2634 -3.5180 34 1 5.7877 3.3330 -2.7959 35 1 6.9471 4.6137 -4.4704 36 1 5.5815 4.4924 -5.6300 37 1 6.3141 3.2052 -7.4046 38 1 7.3129 1.7418 -7.2330 39 1 7.5745 2.7727 -9.1922 40 1 4.9747 1.5794 -6.1573 41 1 5.8474 0.6930 -4.8779 42 1 1.3010 0.0440 -2.1556 43 1 2.4460 -1.2088 -1.5036 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260429167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:09 Heat of formation + Delta-G solvation = 16.270778 kcal Electronic energy + Delta-G solvation = -18535.531830 eV Core-core repulsion = 15808.623079 eV Total energy + Delta-G solvation = -2726.908750 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.26436 -38.67904 -34.53281 -32.99643 -31.13548 -29.17065 -28.43649 -26.40055 -25.87223 -23.87994 -22.53090 -21.87885 -20.27434 -19.86185 -19.45811 -16.82358 -16.19688 -15.84484 -15.48966 -15.17297 -14.58975 -14.35834 -13.71852 -13.53237 -13.21067 -13.08990 -12.99255 -12.70372 -12.40021 -11.80211 -11.78921 -11.57921 -11.37703 -11.23405 -11.10006 -10.84844 -10.67660 -10.59312 -10.48304 -10.30892 -10.09874 -9.78330 -9.51750 -9.11275 -8.50910 -8.29838 -8.01899 -6.33184 -4.01870 3.44127 3.47696 3.63270 3.66069 4.06410 4.25829 4.56002 4.57752 4.77954 4.96607 5.05768 5.13036 5.16867 5.18644 5.26341 5.36386 5.41290 5.43912 5.45838 5.52514 5.53678 5.65193 5.70140 5.71565 5.86268 5.95912 5.98260 6.06933 6.16567 6.21681 6.34267 6.47220 6.71148 6.72013 6.79937 6.99277 7.24946 7.37062 7.40334 7.58499 8.24840 8.49337 8.91775 9.70012 11.07414 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.068057 B = 0.003161 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.321377 B = 8856.958916 C = 9051.032606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.489 5.489 3 C 0.004 3.996 4 C -0.113 4.113 5 C -0.105 4.105 6 C 0.053 3.947 7 N -0.532 5.532 8 C 0.040 3.960 9 C -0.110 4.110 10 C -0.092 4.092 11 H 0.060 0.940 12 C 0.020 3.980 13 C -0.596 4.596 14 H 0.047 0.953 15 C 0.013 3.987 16 N -0.915 5.915 17 Si 1.070 2.930 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.043 3.957 22 C 0.004 3.996 23 H 0.035 0.965 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.032 0.968 33 H 0.070 0.930 34 H 0.039 0.961 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.010 0.990 38 H 0.006 0.994 39 H 0.269 0.731 40 H 0.074 0.926 41 H 0.044 0.956 42 H 0.072 0.928 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.125 -4.212 17.067 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.211 5.211 3 C -0.125 4.125 4 C -0.132 4.132 5 C -0.143 4.143 6 C -0.075 4.075 7 N -0.256 5.256 8 C -0.087 4.087 9 C -0.148 4.148 10 C -0.111 4.111 11 H 0.079 0.921 12 C -0.017 4.017 13 C -0.635 4.635 14 H 0.066 0.934 15 C -0.190 4.190 16 N -0.552 5.552 17 Si 0.898 3.102 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.210 1.210 21 C -0.084 4.084 22 C -0.124 4.124 23 H 0.053 0.947 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.105 0.895 27 H 0.088 0.912 28 H 0.116 0.884 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.029 0.971 38 H 0.024 0.976 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.090 0.910 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.383 -3.964 16.312 20.860 hybrid contribution -0.742 -0.339 0.892 1.209 sum -13.125 -4.303 17.204 22.063 Atomic orbital electron populations 1.22859 0.89837 1.02331 1.01011 1.68458 1.08976 1.18767 1.24851 1.24000 0.97118 0.91335 1.00047 1.22986 0.98239 0.96063 0.95943 1.21570 0.99512 0.98255 0.95013 1.22258 0.97044 0.96036 0.92176 1.63579 1.45919 1.04523 1.11620 1.23098 0.96533 0.91961 0.97125 1.22612 0.97666 0.97877 0.96663 1.22303 0.95003 0.93367 1.00435 0.92105 1.19202 0.96608 0.96358 0.89578 1.22046 1.11484 1.34729 0.95198 0.93418 1.25822 1.02845 0.98032 0.92340 1.70749 1.21524 1.32721 1.30190 0.83533 0.75295 0.75882 0.75441 1.21491 1.21579 1.21039 1.22971 0.93115 0.96791 0.95519 1.24102 0.97108 1.00405 0.90803 0.94660 0.91249 0.91496 0.89499 0.91157 0.88393 0.91589 0.91209 0.91236 0.95000 0.91169 0.94289 0.91333 0.91017 0.97134 0.97595 0.92073 0.90743 0.93719 0.90959 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.09 9.65 60.07 0.58 0.49 16 2 N -0.49 -4.64 6.56 -246.61 -1.62 -6.25 16 3 C 0.00 0.03 7.55 -2.77 -0.02 0.01 16 4 C -0.11 -1.03 3.84 -89.69 -0.34 -1.37 16 5 C -0.11 -1.09 5.11 -26.73 -0.14 -1.23 16 6 C 0.05 0.67 4.56 -3.82 -0.02 0.66 16 7 N -0.53 -8.31 5.16 -231.26 -1.19 -9.51 16 8 C 0.04 0.62 5.78 -2.30 -0.01 0.61 16 9 C -0.11 -2.07 6.23 -24.59 -0.15 -2.22 16 10 C -0.09 -1.90 2.87 -88.80 -0.25 -2.16 16 11 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 12 C 0.02 0.51 3.64 -27.88 -0.10 0.41 16 13 C -0.60 -16.93 8.81 -34.44 -0.30 -17.23 16 14 H 0.05 1.34 7.74 -52.48 -0.41 0.93 16 15 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 16 N -0.92 -28.30 13.65 55.43 0.76 -27.54 16 17 Si 1.07 25.54 29.90 -169.99 -5.08 20.46 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 21 C 0.04 0.77 6.45 -2.84 -0.02 0.75 16 22 C 0.00 0.04 7.52 -2.77 -0.02 0.02 16 23 H 0.03 0.26 7.62 -51.93 -0.40 -0.13 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.57 7.88 -51.93 -0.41 0.16 16 28 H 0.10 0.92 8.13 -51.93 -0.42 0.50 16 29 H 0.07 0.69 7.49 -51.93 -0.39 0.31 16 30 H 0.07 0.75 7.84 -51.93 -0.41 0.35 16 31 H 0.07 0.85 8.03 -51.93 -0.42 0.43 16 32 H 0.03 0.41 7.85 -51.93 -0.41 0.00 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.04 0.57 7.62 -51.93 -0.40 0.17 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.07 1.43 7.94 -51.93 -0.41 1.02 16 37 H 0.01 0.28 7.87 -51.93 -0.41 -0.13 16 38 H 0.01 0.16 8.01 -51.93 -0.42 -0.26 16 39 H 0.27 8.28 7.22 -40.82 -0.29 7.98 16 40 H 0.07 1.39 7.82 -51.93 -0.41 0.99 16 41 H 0.04 0.74 7.56 -51.93 -0.39 0.35 16 42 H 0.07 0.63 7.37 -51.93 -0.38 0.25 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 335.03 15.07 5.05 5.05 Total: -1.00 -30.43 335.03 -11.11 -41.54 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -8.12 Total: -2.77 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: -0.90 Total: -20.98 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: -2.05 Total: -43.30 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -5.08 Total: 20.46 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.43 -11.11 -41.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260429167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.809 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds