Wall clock time and date at job start Mon Mar 30 2020 03:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47961 * 110.99821 * 2 1 4 4 C 1.53930 * 86.18118 * 222.41415 * 3 2 1 5 5 C 1.53002 * 113.73180 * 138.07461 * 4 3 2 6 6 C 1.53003 * 109.47063 * 175.00007 * 5 4 3 7 7 N 1.46900 * 109.47151 * 180.02562 * 6 5 4 8 8 C 1.47843 * 110.99830 * 69.16048 * 7 6 5 9 9 C 1.54907 * 104.79600 * 146.36388 * 8 7 6 10 10 C 1.55143 * 101.64998 * 322.92839 * 9 8 7 11 11 H 1.08999 * 110.85670 * 277.19730 * 10 9 8 12 12 C 1.52998 * 110.70234 * 154.03645 * 10 9 8 13 13 C 1.50706 * 109.47348 * 71.40079 * 12 10 9 14 14 H 1.08005 * 119.99758 * 359.97438 * 13 12 10 15 15 C 1.37871 * 120.00102 * 179.97438 * 13 12 10 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47483 * 269.99808 * 17 15 13 19 19 H 1.48499 * 109.47134 * 30.00322 * 17 15 13 20 20 H 1.48507 * 109.46904 * 150.00145 * 17 15 13 21 21 C 1.47445 * 110.99837 * 190.00278 * 7 6 5 22 22 C 1.47957 * 110.99984 * 260.64190 * 2 1 3 23 23 H 1.08998 * 109.47190 * 60.00525 * 1 2 3 24 24 H 1.09000 * 109.46876 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47344 * 299.99714 * 1 2 3 26 26 H 1.08999 * 113.76085 * 108.09669 * 3 2 1 27 27 H 1.08998 * 113.75702 * 336.73429 * 3 2 1 28 28 H 1.08997 * 113.73806 * 269.25815 * 4 3 2 29 29 H 1.09000 * 109.46715 * 55.00553 * 5 4 3 30 30 H 1.08997 * 109.47307 * 295.00400 * 5 4 3 31 31 H 1.09000 * 109.46910 * 60.00665 * 6 5 4 32 32 H 1.08991 * 109.47245 * 300.00766 * 6 5 4 33 33 H 1.08996 * 110.37498 * 265.19451 * 8 7 6 34 34 H 1.09003 * 110.37396 * 27.42433 * 8 7 6 35 35 H 1.09004 * 110.98791 * 204.84165 * 9 8 7 36 36 H 1.08999 * 110.99128 * 81.01991 * 9 8 7 37 37 H 1.09001 * 109.47671 * 311.40288 * 12 10 9 38 38 H 1.09006 * 109.47297 * 191.40007 * 12 10 9 39 39 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 40 40 H 1.09004 * 109.88739 * 117.34329 * 21 7 6 41 41 H 1.08994 * 110.02337 * 356.22508 * 21 7 6 42 42 H 1.08994 * 113.76103 * 23.26040 * 22 2 1 43 43 H 1.09000 * 113.75690 * 251.89853 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3814 0.0000 4 6 3.0211 0.8793 -1.0359 5 6 3.2610 1.8570 -2.1881 6 6 4.3768 1.3214 -3.0875 7 7 4.6076 2.2604 -4.1934 8 6 5.2130 3.5172 -3.7037 9 6 6.1457 3.9802 -4.8506 10 6 6.7037 2.6275 -5.3661 11 1 7.5428 2.2956 -4.7548 12 6 7.1172 2.7376 -6.8350 13 6 8.3646 3.5762 -6.9443 14 1 8.8169 3.9897 -6.0549 15 6 8.9284 3.8156 -8.1795 16 7 8.3774 3.3125 -9.2625 17 14 10.4741 4.8557 -8.3148 18 1 10.0977 6.2819 -8.4866 19 1 11.2835 4.7027 -7.0793 20 1 11.2700 4.4093 -9.4865 21 6 5.5018 1.6726 -5.2078 22 6 1.9992 -0.2246 -1.3629 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 2.4459 1.6803 0.9483 27 1 1.3009 2.1197 -0.3941 28 1 3.9458 0.5069 -0.5952 29 1 3.5526 2.8274 -1.7863 30 1 2.3456 1.9648 -2.7698 31 1 4.0853 0.3510 -3.4893 32 1 5.2922 1.2136 -2.5058 33 1 4.4406 4.2634 -3.5180 34 1 5.7877 3.3330 -2.7959 35 1 6.9471 4.6137 -4.4704 36 1 5.5815 4.4924 -5.6300 37 1 6.3141 3.2052 -7.4046 38 1 7.3129 1.7418 -7.2330 39 1 7.5745 2.7727 -9.1922 40 1 4.9747 1.5794 -6.1573 41 1 5.8474 0.6930 -4.8779 42 1 1.3010 0.0440 -2.1556 43 1 2.4460 -1.2088 -1.5036 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260429167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:08 Heat of formation + Delta-G solvation = -4.331836 kcal Electronic energy + Delta-G solvation = -18536.425226 eV Core-core repulsion = 15808.623079 eV Total energy + Delta-G solvation = -2727.802147 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.99762 -40.02639 -36.17817 -34.56745 -32.43576 -30.62296 -29.50257 -27.58215 -27.06501 -25.06129 -24.40292 -22.82495 -21.48738 -21.15162 -20.53502 -18.96110 -17.08451 -16.78726 -16.51612 -16.14579 -15.81408 -15.56647 -15.31256 -15.07432 -14.70018 -14.34104 -13.90760 -13.84284 -13.64500 -13.44238 -13.10035 -12.70636 -12.62323 -12.51834 -12.25021 -12.09844 -11.98719 -11.94677 -11.91748 -11.51559 -11.45758 -11.32194 -11.22688 -10.61306 -10.53392 -9.78365 -9.28839 -8.67241 -6.37344 1.51373 1.60763 1.78032 2.56473 2.93539 3.04151 3.16785 3.47931 3.72847 3.83811 3.83935 4.04682 4.15608 4.24305 4.31192 4.36925 4.41081 4.50549 4.54037 4.56461 4.59649 4.62837 4.76176 4.78360 4.82941 4.84683 4.90437 4.95545 5.01760 5.07855 5.15914 5.19348 5.22913 5.35275 5.36216 5.43699 5.54032 5.95751 6.02619 6.07787 6.18258 6.20878 6.59233 7.44307 8.73199 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.068057 B = 0.003161 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.321377 B = 8856.958916 C = 9051.032606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.506 5.506 3 C 0.007 3.993 4 C -0.108 4.108 5 C -0.093 4.093 6 C 0.053 3.947 7 N -0.537 5.537 8 C 0.052 3.948 9 C -0.110 4.110 10 C -0.091 4.091 11 H 0.056 0.944 12 C 0.024 3.976 13 C -0.607 4.607 14 H 0.050 0.950 15 C -0.042 4.042 16 N -0.941 5.941 17 Si 1.119 2.881 18 H -0.272 1.272 19 H -0.269 1.269 20 H -0.284 1.284 21 C 0.053 3.947 22 C 0.004 3.996 23 H 0.038 0.962 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.034 0.966 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.053 0.947 37 H -0.012 1.012 38 H -0.016 1.016 39 H 0.255 0.745 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.303 -3.665 19.037 23.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.228 5.228 3 C -0.121 4.121 4 C -0.127 4.127 5 C -0.132 4.132 6 C -0.075 4.075 7 N -0.261 5.261 8 C -0.075 4.075 9 C -0.148 4.148 10 C -0.111 4.111 11 H 0.075 0.925 12 C -0.013 4.013 13 C -0.645 4.645 14 H 0.068 0.932 15 C -0.239 4.239 16 N -0.579 5.579 17 Si 0.940 3.060 18 H -0.198 1.198 19 H -0.194 1.194 20 H -0.209 1.209 21 C -0.075 4.075 22 C -0.125 4.125 23 H 0.057 0.943 24 H 0.090 0.910 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.095 0.905 28 H 0.115 0.885 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.052 0.948 33 H 0.108 0.892 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.006 0.994 38 H 0.002 0.998 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.587 -3.426 18.311 22.483 hybrid contribution -0.728 -0.551 0.291 0.958 sum -13.315 -3.977 18.602 23.220 Atomic orbital electron populations 1.22883 0.88993 1.02676 1.01516 1.68451 1.09995 1.19376 1.25021 1.24015 0.96887 0.91150 1.00080 1.22904 0.98342 0.95825 0.95628 1.21455 0.98362 0.98554 0.94802 1.22353 0.97975 0.95685 0.91502 1.63592 1.44870 1.05153 1.12494 1.23044 0.96425 0.92098 0.95939 1.22553 0.98168 0.96544 0.97516 1.22172 0.96215 0.95850 0.96816 0.92502 1.19097 0.95156 0.94346 0.92725 1.22437 1.12193 1.34551 0.95313 0.93159 1.27428 1.05673 0.98649 0.92174 1.70888 1.21728 1.34122 1.31166 0.82915 0.71820 0.74974 0.76278 1.19768 1.19361 1.20927 1.22762 0.92025 0.96728 0.96001 1.24111 0.97139 1.00360 0.90853 0.94305 0.91049 0.90824 0.89014 0.90500 0.88538 0.91277 0.91442 0.90869 0.94804 0.89214 0.92749 0.91455 0.92838 0.99394 0.99807 0.93601 0.92286 0.92503 0.90727 0.89594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.16 9.65 127.69 1.23 1.07 16 2 N -0.51 -8.64 6.56 -934.15 -6.12 -14.76 16 3 C 0.01 0.11 7.55 86.40 0.65 0.76 16 4 C -0.11 -1.72 3.84 -10.15 -0.04 -1.76 16 5 C -0.09 -1.69 5.11 30.60 0.16 -1.53 16 6 C 0.05 1.21 4.56 86.30 0.39 1.60 16 7 N -0.54 -15.82 5.16 -885.56 -4.57 -20.39 16 8 C 0.05 1.49 5.78 86.77 0.50 1.99 16 9 C -0.11 -4.05 6.23 31.98 0.20 -3.85 16 10 C -0.09 -3.79 2.87 -9.61 -0.03 -3.82 16 11 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 12 C 0.02 1.28 3.64 29.85 0.11 1.39 16 13 C -0.61 -34.92 8.81 25.60 0.23 -34.70 16 14 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 15 C -0.04 -2.49 5.46 84.65 0.46 -2.03 16 16 N -0.94 -59.52 13.65 21.45 0.29 -59.23 16 17 Si 1.12 50.90 29.90 68.60 2.05 52.96 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 19 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 C 0.05 1.85 6.45 86.65 0.56 2.41 16 22 C 0.00 0.06 7.52 86.41 0.65 0.71 16 23 H 0.04 0.50 7.62 -2.39 -0.02 0.49 16 24 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.08 1.04 7.88 -2.39 -0.02 1.02 16 28 H 0.10 1.60 8.13 -2.39 -0.02 1.58 16 29 H 0.07 1.23 7.49 -2.39 -0.02 1.21 16 30 H 0.07 1.28 7.84 -2.39 -0.02 1.26 16 31 H 0.07 1.64 8.03 -2.39 -0.02 1.62 16 32 H 0.03 0.78 7.85 -2.39 -0.02 0.76 16 33 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.05 1.41 7.62 -2.39 -0.02 1.39 16 35 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 36 H 0.05 2.15 7.94 -2.39 -0.02 2.13 16 37 H -0.01 -0.70 7.87 -2.39 -0.02 -0.71 16 38 H -0.02 -0.93 8.01 -2.38 -0.02 -0.94 16 39 H 0.25 16.34 7.22 -92.71 -0.67 15.67 16 40 H 0.06 2.25 7.82 -2.39 -0.02 2.23 16 41 H 0.06 1.84 7.56 -2.39 -0.02 1.82 16 42 H 0.07 1.17 7.37 -2.39 -0.02 1.15 16 43 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -65.51 335.03 -2.25 -67.76 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 1.03 Total: 11.42 kcal Atomic # 6 Polarization: -42.83 SS G_CDS: 5.07 Total: -37.76 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -10.40 Total: -94.38 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 2.05 Total: 52.96 kcal Total: -65.51 -2.25 -67.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260429167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.426 kcal (2) G-P(sol) polarization free energy of solvation -65.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds