Wall clock time and date at job start Mon Mar 30 2020 03:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47958 * 110.99920 * 2 1 4 4 C 1.53940 * 86.17977 * 222.41764 * 3 2 1 5 5 C 1.53001 * 113.73339 * 138.07654 * 4 3 2 6 6 C 1.53000 * 109.46886 * 174.99974 * 5 4 3 7 7 N 1.46901 * 109.46769 * 180.02562 * 6 5 4 8 8 C 1.46839 * 111.00222 * 294.21135 * 7 6 5 9 9 C 1.53034 * 109.52552 * 174.16216 * 8 7 6 10 10 C 1.53123 * 109.28182 * 59.17780 * 9 8 7 11 11 C 1.50696 * 109.57716 * 182.41084 * 10 9 8 12 12 H 1.07997 * 119.99878 * 119.72167 * 11 10 9 13 13 C 1.37871 * 120.00268 * 299.71257 * 11 10 9 14 14 N 1.31517 * 120.00433 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 119.99926 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.46838 * 89.99929 * 15 13 11 17 17 H 1.48493 * 109.47177 * 209.99535 * 15 13 11 18 18 H 1.48498 * 109.47178 * 329.99984 * 15 13 11 19 19 C 1.53120 * 109.16070 * 302.35293 * 10 9 8 20 20 C 1.46849 * 110.99649 * 169.99929 * 7 6 5 21 21 C 1.47963 * 110.99497 * 260.63776 * 2 1 3 22 22 H 1.09004 * 109.47272 * 60.00024 * 1 2 3 23 23 H 1.08999 * 109.47440 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46686 * 300.00144 * 1 2 3 25 25 H 1.08998 * 113.75744 * 108.09981 * 3 2 1 26 26 H 1.09000 * 113.76107 * 336.73483 * 3 2 1 27 27 H 1.09002 * 113.73547 * 269.25977 * 4 3 2 28 28 H 1.09001 * 109.46652 * 55.00320 * 5 4 3 29 29 H 1.08992 * 109.47514 * 295.00409 * 5 4 3 30 30 H 1.09002 * 109.47398 * 300.00496 * 6 5 4 31 31 H 1.09001 * 109.47194 * 60.00677 * 6 5 4 32 32 H 1.09006 * 109.46266 * 294.17473 * 8 7 6 33 33 H 1.09002 * 109.46276 * 54.14664 * 8 7 6 34 34 H 1.09006 * 109.50444 * 299.24199 * 9 8 7 35 35 H 1.09003 * 109.50687 * 179.12283 * 9 8 7 36 36 H 1.09005 * 109.51783 * 62.25186 * 10 9 8 37 37 H 0.96996 * 120.00257 * 180.02562 * 14 13 11 38 38 H 1.09005 * 109.50142 * 297.71204 * 19 10 9 39 39 H 1.08993 * 109.53791 * 177.61458 * 19 10 9 40 40 H 1.08991 * 109.46839 * 305.85721 * 20 7 6 41 41 H 1.09005 * 109.46224 * 65.84006 * 20 7 6 42 42 H 1.08999 * 113.76224 * 23.26914 * 21 2 1 43 43 H 1.08993 * 113.76224 * 251.89802 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8792 -1.0361 5 6 3.2611 1.8569 -2.1882 6 6 4.3768 1.3212 -3.0877 7 7 4.6076 2.2602 -4.1935 8 6 3.4388 2.3270 -5.0799 9 6 3.6563 3.4168 -6.1320 10 6 4.9158 3.0944 -6.9409 11 6 5.1696 4.1938 -7.9398 12 1 6.0901 4.7572 -7.9005 13 6 4.2266 4.4804 -8.9040 14 7 4.4483 5.4395 -9.7761 15 14 2.6342 3.5061 -8.9717 16 1 1.6104 4.1718 -8.1266 17 1 2.1523 3.4422 -10.3749 18 1 2.8739 2.1301 -8.4675 19 6 6.1097 2.9826 -5.9887 20 6 5.8210 1.9054 -4.9406 21 6 1.9992 -0.2247 -1.3630 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 2.4460 1.6802 0.9482 26 1 1.3010 2.1198 -0.3940 27 1 3.9459 0.5067 -0.5954 28 1 3.5527 2.8273 -1.7864 29 1 2.3457 1.9648 -2.7699 30 1 5.2923 1.2133 -2.5059 31 1 4.0852 0.3508 -3.4895 32 1 3.3034 1.3656 -5.5754 33 1 2.5507 2.5611 -4.4928 34 1 3.7781 4.3807 -5.6378 35 1 2.7952 3.4555 -6.7993 36 1 4.7792 2.1492 -7.4664 37 1 3.7847 5.6413 -10.4542 38 1 6.2700 3.9396 -5.4921 39 1 7.0019 2.7115 -6.5530 40 1 6.6632 1.8333 -4.2525 41 1 5.6744 0.9461 -5.4370 42 1 1.3009 0.0440 -2.1557 43 1 2.4459 -1.2089 -1.5038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260435003.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:02 Heat of formation + Delta-G solvation = 29.650677 kcal Electronic energy + Delta-G solvation = -19121.206692 eV Core-core repulsion = 16394.878138 eV Total energy + Delta-G solvation = -2726.328554 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.22693 -38.48677 -34.67002 -32.58474 -31.24491 -30.22891 -28.68189 -26.36829 -25.91845 -23.61518 -22.66311 -21.82777 -20.63279 -19.78665 -18.81453 -16.67686 -16.16248 -15.98465 -15.34732 -15.13149 -14.63470 -14.20712 -14.10142 -13.58925 -13.18673 -13.07701 -12.95279 -12.79032 -12.42118 -12.02295 -11.84359 -11.65868 -11.52918 -11.25635 -11.02185 -10.87511 -10.64890 -10.53084 -10.46529 -10.04971 -9.86856 -9.58280 -9.09895 -9.03398 -8.88866 -8.49590 -7.92055 -6.04281 -4.02335 3.27194 3.37427 3.39862 3.69817 4.09951 4.30504 4.42968 4.58194 4.82301 4.99751 5.10566 5.19285 5.22779 5.27357 5.31675 5.35744 5.45568 5.53110 5.56542 5.58859 5.68279 5.72132 5.83097 5.88538 5.97119 6.01938 6.13804 6.14876 6.18126 6.27890 6.39446 6.47967 6.75090 6.77337 6.86806 6.95759 7.25283 7.46499 7.55925 7.67361 7.82143 8.57074 9.00654 9.58941 11.09361 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.032039 B = 0.004543 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.723875 B = 6162.318742 C = 6737.457610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.489 5.489 3 C 0.004 3.996 4 C -0.111 4.111 5 C -0.109 4.109 6 C 0.057 3.943 7 N -0.535 5.535 8 C 0.054 3.946 9 C -0.116 4.116 10 C 0.013 3.987 11 C -0.509 4.509 12 H 0.073 0.927 13 C 0.068 3.932 14 N -0.904 5.904 15 Si 0.887 3.113 16 H -0.279 1.279 17 H -0.298 1.298 18 H -0.268 1.268 19 C -0.096 4.096 20 C 0.057 3.943 21 C 0.003 3.997 22 H 0.035 0.965 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.027 0.973 32 H 0.023 0.977 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.020 0.980 37 H 0.263 0.737 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.024 0.976 42 H 0.070 0.930 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.191 -10.407 17.741 21.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.211 5.211 3 C -0.125 4.125 4 C -0.130 4.130 5 C -0.147 4.147 6 C -0.071 4.071 7 N -0.260 5.260 8 C -0.073 4.073 9 C -0.154 4.154 10 C -0.006 4.006 11 C -0.547 4.547 12 H 0.091 0.909 13 C -0.133 4.133 14 N -0.542 5.542 15 Si 0.718 3.282 16 H -0.206 1.206 17 H -0.226 1.226 18 H -0.193 1.193 19 C -0.134 4.134 20 C -0.070 4.070 21 C -0.126 4.126 22 H 0.053 0.947 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.106 0.894 26 H 0.089 0.911 27 H 0.117 0.883 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.039 0.961 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.043 0.957 42 H 0.088 0.912 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.045 -10.305 18.316 21.613 hybrid contribution -1.569 -0.725 -1.143 2.072 sum -6.613 -11.030 17.173 21.455 Atomic orbital electron populations 1.22861 0.89854 1.02291 1.01055 1.68456 1.08970 1.18893 1.24750 1.24007 0.97143 0.91251 1.00099 1.22979 0.98179 0.95903 0.95972 1.21634 0.98950 0.98933 0.95210 1.22050 0.98456 0.93500 0.93067 1.61934 1.03815 1.49086 1.11116 1.22221 0.92253 0.98586 0.94287 1.22014 0.99710 0.97928 0.95749 1.19180 0.90913 0.97217 0.93279 1.21076 1.05212 1.16744 1.11668 0.90860 1.25025 0.98196 0.94778 0.95308 1.69903 1.35581 1.30695 1.18045 0.86849 0.84271 0.81319 0.75787 1.20619 1.22601 1.19297 1.21494 0.99032 0.97566 0.95318 1.22175 0.91453 0.97601 0.95820 1.24110 0.97218 1.00438 0.90831 0.94674 0.91290 0.91449 0.89414 0.91134 0.88269 0.90542 0.91835 0.91140 0.95479 0.95895 0.91920 0.91295 0.93538 0.96147 0.92764 0.91811 0.92423 0.91877 0.95742 0.91156 0.89568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 9.64 60.07 0.58 0.48 16 2 N -0.49 -4.89 6.56 -246.59 -1.62 -6.50 16 3 C 0.00 0.03 7.55 -2.76 -0.02 0.01 16 4 C -0.11 -1.05 3.84 -89.68 -0.34 -1.40 16 5 C -0.11 -1.21 5.00 -26.73 -0.13 -1.34 16 6 C 0.06 0.73 4.95 -3.82 -0.02 0.71 16 7 N -0.53 -8.71 4.66 -234.67 -1.09 -9.80 16 8 C 0.05 0.97 5.29 -3.84 -0.02 0.94 16 9 C -0.12 -2.53 4.84 -26.65 -0.13 -2.66 16 10 C 0.01 0.31 1.75 -91.65 -0.16 0.15 16 11 C -0.51 -14.39 9.15 -34.44 -0.32 -14.70 16 12 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 13 C 0.07 1.97 5.45 -17.82 -0.10 1.88 16 14 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 15 Si 0.89 22.17 24.36 -169.99 -4.14 18.03 16 16 H -0.28 -6.77 6.89 56.52 0.39 -6.38 16 17 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 18 H -0.27 -6.44 6.53 56.52 0.37 -6.07 16 19 C -0.10 -1.93 5.32 -26.65 -0.14 -2.07 16 20 C 0.06 0.96 5.46 -3.83 -0.02 0.93 16 21 C 0.00 0.03 7.52 -2.76 -0.02 0.01 16 22 H 0.03 0.29 7.62 -51.93 -0.40 -0.10 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.63 7.88 -51.93 -0.41 0.22 16 27 H 0.10 0.92 8.13 -51.93 -0.42 0.50 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.75 6.12 -51.93 -0.32 0.43 16 30 H 0.07 0.83 7.99 -51.93 -0.41 0.41 16 31 H 0.03 0.35 8.12 -51.93 -0.42 -0.08 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 1.00 6.21 -51.93 -0.32 0.68 16 34 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.05 1.07 3.38 -51.93 -0.18 0.89 16 36 H 0.02 0.50 7.19 -51.93 -0.37 0.13 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.06 0.92 8.01 -51.93 -0.42 0.51 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.68 7.37 -51.93 -0.38 0.30 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 321.57 15.07 4.85 4.85 Total: -1.00 -30.14 321.57 -9.95 -40.10 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -7.88 Total: -2.47 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -0.84 Total: -17.05 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: -1.94 Total: -43.44 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.14 Total: 18.03 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.14 -9.95 -40.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260435003.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.748 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds