Wall clock time and date at job start Mon Mar 30 2020 03:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47958 * 110.99920 * 2 1 4 4 C 1.53940 * 86.17977 * 222.41764 * 3 2 1 5 5 C 1.53001 * 113.73339 * 138.07654 * 4 3 2 6 6 C 1.53000 * 109.46886 * 174.99974 * 5 4 3 7 7 N 1.46901 * 109.46769 * 180.02562 * 6 5 4 8 8 C 1.46839 * 111.00222 * 294.21135 * 7 6 5 9 9 C 1.53034 * 109.52552 * 174.16216 * 8 7 6 10 10 C 1.53123 * 109.28182 * 59.17780 * 9 8 7 11 11 C 1.50696 * 109.57716 * 182.41084 * 10 9 8 12 12 H 1.07997 * 119.99878 * 119.72167 * 11 10 9 13 13 C 1.37871 * 120.00268 * 299.71257 * 11 10 9 14 14 N 1.31517 * 120.00433 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 119.99926 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.46838 * 89.99929 * 15 13 11 17 17 H 1.48493 * 109.47177 * 209.99535 * 15 13 11 18 18 H 1.48498 * 109.47178 * 329.99984 * 15 13 11 19 19 C 1.53120 * 109.16070 * 302.35293 * 10 9 8 20 20 C 1.46849 * 110.99649 * 169.99929 * 7 6 5 21 21 C 1.47963 * 110.99497 * 260.63776 * 2 1 3 22 22 H 1.09004 * 109.47272 * 60.00024 * 1 2 3 23 23 H 1.08999 * 109.47440 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46686 * 300.00144 * 1 2 3 25 25 H 1.08998 * 113.75744 * 108.09981 * 3 2 1 26 26 H 1.09000 * 113.76107 * 336.73483 * 3 2 1 27 27 H 1.09002 * 113.73547 * 269.25977 * 4 3 2 28 28 H 1.09001 * 109.46652 * 55.00320 * 5 4 3 29 29 H 1.08992 * 109.47514 * 295.00409 * 5 4 3 30 30 H 1.09002 * 109.47398 * 300.00496 * 6 5 4 31 31 H 1.09001 * 109.47194 * 60.00677 * 6 5 4 32 32 H 1.09006 * 109.46266 * 294.17473 * 8 7 6 33 33 H 1.09002 * 109.46276 * 54.14664 * 8 7 6 34 34 H 1.09006 * 109.50444 * 299.24199 * 9 8 7 35 35 H 1.09003 * 109.50687 * 179.12283 * 9 8 7 36 36 H 1.09005 * 109.51783 * 62.25186 * 10 9 8 37 37 H 0.96996 * 120.00257 * 180.02562 * 14 13 11 38 38 H 1.09005 * 109.50142 * 297.71204 * 19 10 9 39 39 H 1.08993 * 109.53791 * 177.61458 * 19 10 9 40 40 H 1.08991 * 109.46839 * 305.85721 * 20 7 6 41 41 H 1.09005 * 109.46224 * 65.84006 * 20 7 6 42 42 H 1.08999 * 113.76224 * 23.26914 * 21 2 1 43 43 H 1.08993 * 113.76224 * 251.89802 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8792 -1.0361 5 6 3.2611 1.8569 -2.1882 6 6 4.3768 1.3212 -3.0877 7 7 4.6076 2.2602 -4.1935 8 6 3.4388 2.3270 -5.0799 9 6 3.6563 3.4168 -6.1320 10 6 4.9158 3.0944 -6.9409 11 6 5.1696 4.1938 -7.9398 12 1 6.0901 4.7572 -7.9005 13 6 4.2266 4.4804 -8.9040 14 7 4.4483 5.4395 -9.7761 15 14 2.6342 3.5061 -8.9717 16 1 1.6104 4.1718 -8.1266 17 1 2.1523 3.4422 -10.3749 18 1 2.8739 2.1301 -8.4675 19 6 6.1097 2.9826 -5.9887 20 6 5.8210 1.9054 -4.9406 21 6 1.9992 -0.2247 -1.3630 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 2.4460 1.6802 0.9482 26 1 1.3010 2.1198 -0.3940 27 1 3.9459 0.5067 -0.5954 28 1 3.5527 2.8273 -1.7864 29 1 2.3457 1.9648 -2.7699 30 1 5.2923 1.2133 -2.5059 31 1 4.0852 0.3508 -3.4895 32 1 3.3034 1.3656 -5.5754 33 1 2.5507 2.5611 -4.4928 34 1 3.7781 4.3807 -5.6378 35 1 2.7952 3.4555 -6.7993 36 1 4.7792 2.1492 -7.4664 37 1 3.7847 5.6413 -10.4542 38 1 6.2700 3.9396 -5.4921 39 1 7.0019 2.7115 -6.5530 40 1 6.6632 1.8333 -4.2525 41 1 5.6744 0.9461 -5.4370 42 1 1.3009 0.0440 -2.1557 43 1 2.4459 -1.2089 -1.5038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260435003.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:02 Heat of formation + Delta-G solvation = 7.742587 kcal Electronic energy + Delta-G solvation = -19122.156698 eV Core-core repulsion = 16394.878138 eV Total energy + Delta-G solvation = -2727.278560 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.97885 -39.87731 -36.18142 -34.23765 -32.68590 -31.71861 -29.73211 -27.53818 -27.04830 -24.79921 -24.15086 -23.17302 -21.78939 -20.54845 -20.43632 -18.83134 -17.32388 -16.86014 -16.42607 -16.24130 -15.70002 -15.61687 -15.36309 -15.06700 -14.83776 -14.42019 -14.20861 -13.78990 -13.62941 -13.31397 -13.27061 -13.08360 -12.64597 -12.38798 -12.17440 -12.15547 -11.96348 -11.92477 -11.68286 -11.49530 -11.36154 -11.20014 -10.96034 -10.76223 -10.59623 -9.78418 -9.17414 -8.29953 -6.32914 1.28002 1.33285 1.44070 2.31666 2.94191 3.05314 3.05587 3.52336 3.75661 4.06666 4.12256 4.16555 4.23053 4.29214 4.37288 4.44506 4.51055 4.51792 4.55903 4.57343 4.67249 4.70785 4.76460 4.78838 4.83671 4.86038 4.94118 4.95504 4.97991 5.07610 5.21201 5.28230 5.29971 5.37020 5.45729 5.53656 5.68200 5.78581 6.07274 6.20829 6.32796 6.33501 6.74372 7.32315 8.87372 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.032039 B = 0.004543 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.723875 B = 6162.318742 C = 6737.457610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.504 5.504 3 C 0.005 3.995 4 C -0.103 4.103 5 C -0.101 4.101 6 C 0.059 3.941 7 N -0.545 5.545 8 C 0.063 3.937 9 C -0.114 4.114 10 C 0.011 3.989 11 C -0.517 4.517 12 H 0.031 0.969 13 C 0.009 3.991 14 N -0.953 5.953 15 Si 0.952 3.048 16 H -0.265 1.265 17 H -0.299 1.299 18 H -0.249 1.249 19 C -0.093 4.093 20 C 0.065 3.935 21 C 0.002 3.998 22 H 0.035 0.965 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.104 0.896 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.033 0.967 32 H 0.025 0.975 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.036 0.964 36 H 0.016 0.984 37 H 0.265 0.735 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.090 0.910 41 H 0.029 0.971 42 H 0.069 0.931 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.383 -12.433 19.831 24.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.226 5.226 3 C -0.124 4.124 4 C -0.122 4.122 5 C -0.139 4.139 6 C -0.068 4.068 7 N -0.270 5.270 8 C -0.065 4.065 9 C -0.152 4.152 10 C -0.008 4.008 11 C -0.555 4.555 12 H 0.049 0.951 13 C -0.188 4.188 14 N -0.594 5.594 15 Si 0.779 3.221 16 H -0.191 1.191 17 H -0.227 1.227 18 H -0.174 1.174 19 C -0.131 4.131 20 C -0.063 4.063 21 C -0.127 4.127 22 H 0.054 0.946 23 H 0.090 0.910 24 H 0.092 0.908 25 H 0.112 0.888 26 H 0.090 0.910 27 H 0.123 0.877 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.034 0.966 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.047 0.953 42 H 0.088 0.912 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.229 -12.346 20.438 24.676 hybrid contribution -1.091 -0.031 -1.783 2.091 sum -7.320 -12.376 18.655 23.553 Atomic orbital electron populations 1.22883 0.89154 1.02654 1.01413 1.68453 1.09833 1.19396 1.24968 1.24030 0.97011 0.91017 1.00326 1.22899 0.98457 0.95446 0.95425 1.21543 0.98002 0.99064 0.95284 1.22136 0.99811 0.92884 0.91960 1.61900 1.02971 1.50799 1.11348 1.22076 0.93816 0.96889 0.93747 1.21869 0.97903 0.98963 0.96468 1.19153 0.93629 0.94793 0.93176 1.21430 1.03598 1.17444 1.13036 0.95060 1.25911 1.02127 0.95854 0.94858 1.70059 1.37189 1.32882 1.19221 0.85797 0.79799 0.80646 0.75900 1.19091 1.22678 1.17354 1.21402 0.97522 0.98514 0.95699 1.22069 0.92822 0.95949 0.95423 1.24123 0.97223 1.00590 0.90732 0.94588 0.90974 0.90828 0.88814 0.90956 0.87731 0.90969 0.92389 0.89651 0.94882 0.95641 0.89728 0.92665 0.94567 0.96628 0.92631 0.93138 0.92673 0.89154 0.95256 0.91247 0.89337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.18 9.64 127.69 1.23 1.05 16 2 N -0.50 -8.85 6.56 -934.06 -6.12 -14.98 16 3 C 0.00 0.07 7.55 86.41 0.65 0.73 16 4 C -0.10 -1.64 3.84 -10.14 -0.04 -1.68 16 5 C -0.10 -1.90 5.00 30.59 0.15 -1.75 16 6 C 0.06 1.29 4.95 86.30 0.43 1.71 16 7 N -0.55 -16.08 4.66 -896.36 -4.17 -20.26 16 8 C 0.06 2.04 5.29 86.33 0.46 2.50 16 9 C -0.11 -4.82 4.84 30.65 0.15 -4.67 16 10 C 0.01 0.53 1.75 -11.46 -0.02 0.51 16 11 C -0.52 -30.15 9.15 25.60 0.23 -29.91 16 12 H 0.03 2.02 7.99 -2.91 -0.02 1.99 16 13 C 0.01 0.53 5.45 84.65 0.46 0.99 16 14 N -0.95 -60.76 13.96 21.45 0.30 -60.46 16 15 Si 0.95 45.74 24.36 68.60 1.67 47.41 16 16 H -0.26 -12.05 6.89 99.48 0.69 -11.37 16 17 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 18 H -0.25 -11.15 6.53 99.48 0.65 -10.50 16 19 C -0.09 -3.70 5.32 30.65 0.16 -3.54 16 20 C 0.06 1.99 5.46 86.33 0.47 2.47 16 21 C 0.00 0.03 7.52 86.41 0.65 0.68 16 22 H 0.04 0.52 7.62 -2.38 -0.02 0.50 16 23 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.07 1.10 7.88 -2.39 -0.02 1.09 16 27 H 0.10 1.58 8.13 -2.39 -0.02 1.56 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 1.17 6.12 -2.39 -0.01 1.15 16 30 H 0.09 1.63 7.99 -2.39 -0.02 1.62 16 31 H 0.03 0.70 8.12 -2.39 -0.02 0.68 16 32 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.08 2.41 6.21 -2.39 -0.01 2.40 16 34 H 0.05 2.44 8.14 -2.38 -0.02 2.42 16 35 H 0.04 1.59 3.38 -2.39 -0.01 1.58 16 36 H 0.02 0.75 7.19 -2.38 -0.02 0.73 16 37 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 38 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 39 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.09 2.31 8.01 -2.39 -0.02 2.29 16 41 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.07 1.16 7.37 -2.39 -0.02 1.14 16 43 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -65.99 321.57 -2.47 -68.46 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.87 Total: 10.72 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: 4.99 Total: -30.89 kcal Atomic # 7 Polarization: -85.70 SS G_CDS: -10.00 Total: -95.70 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.67 Total: 47.41 kcal Total: -65.99 -2.47 -68.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260435003.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.203 kcal (2) G-P(sol) polarization free energy of solvation -65.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds