Wall clock time and date at job start Mon Mar 30 2020 03:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.47962 * 111.00124 * 2 1 4 4 C 1.53939 * 86.18132 * 222.41735 * 3 2 1 5 5 C 1.53005 * 113.73359 * 138.07888 * 4 3 2 6 6 C 1.52994 * 109.47349 * 174.99871 * 5 4 3 7 7 C 1.53000 * 109.47399 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.46990 * 179.97438 * 7 6 5 9 9 C 1.47904 * 111.00054 * 69.88081 * 8 7 6 10 10 C 1.53995 * 107.05974 * 145.84166 * 9 8 7 11 11 C 1.54603 * 105.14000 * 358.77299 * 10 9 8 12 12 H 1.09000 * 110.72105 * 96.57841 * 11 10 9 13 13 C 1.50695 * 110.72429 * 219.68782 * 11 10 9 14 14 H 1.07995 * 120.00496 * 118.54590 * 13 11 10 15 15 C 1.37880 * 119.99572 * 298.54523 * 13 11 10 16 16 N 1.31511 * 120.00327 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 119.99951 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47297 * 59.99744 * 17 15 13 19 19 H 1.48503 * 109.47261 * 299.99924 * 17 15 13 20 20 H 1.48500 * 109.47454 * 179.97438 * 17 15 13 21 21 C 1.48539 * 110.99804 * 187.27379 * 8 7 6 22 22 C 1.47965 * 111.00177 * 260.63986 * 2 1 3 23 23 H 1.09005 * 109.47449 * 59.99910 * 1 2 3 24 24 H 1.09001 * 109.47283 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47572 * 299.99919 * 1 2 3 26 26 H 1.08995 * 113.76203 * 108.09989 * 3 2 1 27 27 H 1.09005 * 113.85632 * 336.74861 * 3 2 1 28 28 H 1.08996 * 113.73513 * 269.25177 * 4 3 2 29 29 H 1.09006 * 109.46880 * 54.99741 * 5 4 3 30 30 H 1.09003 * 109.46682 * 295.00160 * 5 4 3 31 31 H 1.09002 * 109.46887 * 59.99727 * 6 5 4 32 32 H 1.09003 * 109.47015 * 300.00437 * 6 5 4 33 33 H 1.09006 * 109.46597 * 60.00013 * 7 6 5 34 34 H 1.08990 * 109.47268 * 300.00463 * 7 6 5 35 35 H 1.08993 * 109.91739 * 26.48681 * 9 8 7 36 36 H 1.09002 * 109.91011 * 265.19066 * 9 8 7 37 37 H 1.08996 * 110.30427 * 239.85691 * 10 9 8 38 38 H 1.09000 * 110.30899 * 117.68338 * 10 9 8 39 39 H 0.97006 * 119.99995 * 359.97438 * 16 15 13 40 40 H 1.09002 * 110.66679 * 81.84200 * 21 8 7 41 41 H 1.08997 * 110.66367 * 318.71520 * 21 8 7 42 42 H 1.09000 * 113.75741 * 23.26791 * 22 2 1 43 43 H 1.09000 * 113.76280 * 251.89845 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0210 0.8792 -1.0361 5 6 3.2611 1.8570 -2.1882 6 6 4.3768 1.3214 -3.0877 7 6 4.6163 2.2988 -4.2401 8 7 5.6880 1.7848 -5.1033 9 6 5.2396 0.5896 -5.8503 10 6 5.9324 0.6297 -7.2250 11 6 6.7686 1.9300 -7.2179 12 1 7.8025 1.7222 -6.9421 13 6 6.7037 2.6132 -8.5595 14 1 6.2866 3.6061 -8.6403 15 6 7.1767 1.9706 -9.6839 16 7 7.6842 0.7613 -9.5857 17 14 7.0969 2.8176 -11.3469 18 1 7.8797 4.0787 -11.2983 19 1 5.6824 3.1256 -11.6782 20 1 7.6655 1.9224 -12.3863 21 6 6.0690 2.7860 -6.1323 22 6 1.9992 -0.2247 -1.3630 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 2.4459 1.6803 0.9482 27 1 1.3021 2.1212 -0.3935 28 1 3.9458 0.5069 -0.5954 29 1 3.5526 2.8274 -1.7863 30 1 2.3455 1.9648 -2.7699 31 1 4.0852 0.3510 -3.4894 32 1 5.2922 1.2135 -2.5059 33 1 4.9077 3.2694 -3.8386 34 1 3.7008 2.4063 -4.8217 35 1 4.1576 0.6164 -5.9788 36 1 5.5303 -0.3139 -5.3142 37 1 5.1896 0.6619 -8.0221 38 1 6.5819 -0.2371 -7.3468 39 1 7.7260 0.3215 -8.7220 40 1 6.7593 3.5205 -5.7174 41 1 5.1840 3.2751 -6.5393 42 1 1.3010 0.0441 -2.1556 43 1 2.4460 -1.2089 -1.5037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260446364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:54 Heat of formation + Delta-G solvation = 17.709477 kcal Electronic energy + Delta-G solvation = -18566.167029 eV Core-core repulsion = 15839.320665 eV Total energy + Delta-G solvation = -2726.846364 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.22450 -38.29297 -34.87618 -33.06667 -30.92791 -29.01145 -28.25020 -26.39402 -25.84630 -23.90128 -22.70376 -21.28463 -20.22546 -19.78215 -19.34431 -16.83723 -16.18832 -15.65543 -15.60486 -15.12352 -14.63401 -14.33191 -13.78991 -13.60570 -13.33340 -12.99749 -12.79328 -12.53845 -12.10130 -11.95301 -11.75467 -11.51768 -11.43872 -11.07714 -10.88018 -10.82992 -10.65216 -10.55637 -10.35588 -10.27585 -10.08042 -9.78622 -9.38890 -9.09403 -8.47836 -8.33731 -7.83131 -6.32195 -4.04784 3.43723 3.45232 3.64119 3.67469 4.15918 4.36717 4.53162 4.69582 4.78811 4.97927 5.05958 5.12003 5.17731 5.21704 5.29152 5.39658 5.43787 5.50570 5.53727 5.62216 5.67519 5.76440 5.79893 5.87121 5.94029 6.00839 6.08180 6.11335 6.28779 6.31334 6.41318 6.43292 6.69302 6.73442 6.93916 6.96203 7.27506 7.48229 7.64086 7.75561 8.27471 8.44287 8.90447 9.67787 11.06259 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.054095 B = 0.003226 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.485681 B = 8677.268261 C = 8771.657427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.488 5.488 3 C 0.002 3.998 4 C -0.111 4.111 5 C -0.110 4.110 6 C -0.110 4.110 7 C 0.047 3.953 8 N -0.524 5.524 9 C 0.040 3.960 10 C -0.121 4.121 11 C 0.037 3.963 12 H 0.028 0.972 13 C -0.597 4.597 14 H 0.048 0.952 15 C 0.020 3.980 16 N -0.912 5.912 17 Si 1.067 2.933 18 H -0.288 1.288 19 H -0.289 1.289 20 H -0.283 1.283 21 C 0.049 3.951 22 C 0.004 3.996 23 H 0.034 0.966 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.027 0.973 35 H 0.029 0.971 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.273 0.727 40 H 0.063 0.937 41 H 0.035 0.965 42 H 0.070 0.930 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.041 0.437 16.441 20.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.210 5.210 3 C -0.127 4.127 4 C -0.130 4.130 5 C -0.149 4.149 6 C -0.148 4.148 7 C -0.081 4.081 8 N -0.248 5.248 9 C -0.088 4.088 10 C -0.160 4.160 11 C 0.017 3.983 12 H 0.046 0.954 13 C -0.635 4.635 14 H 0.066 0.934 15 C -0.185 4.185 16 N -0.549 5.549 17 Si 0.895 3.105 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.208 1.208 21 C -0.078 4.078 22 C -0.125 4.125 23 H 0.052 0.948 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.105 0.895 27 H 0.087 0.913 28 H 0.119 0.881 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.053 0.947 42 H 0.088 0.912 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.107 -0.346 15.720 19.251 hybrid contribution -1.622 0.923 0.527 1.939 sum -12.729 0.577 16.247 20.648 Atomic orbital electron populations 1.22856 0.89888 1.02349 1.00941 1.68458 1.08921 1.18728 1.24886 1.24021 0.97209 0.91310 1.00177 1.23001 0.98251 0.95939 0.95806 1.21587 0.99121 0.98484 0.95680 1.21516 0.98207 0.98947 0.96167 1.22236 0.93155 0.97999 0.94750 1.64745 1.34621 1.05981 1.19405 1.22877 0.96894 0.93553 0.95513 1.22632 0.99316 1.00531 0.93550 1.19689 0.94159 0.90922 0.93485 0.95429 1.21933 1.45223 1.03568 0.92792 0.93368 1.25771 0.93408 0.96047 1.03224 1.70781 1.42020 1.13154 1.28902 0.83574 0.76289 0.75210 0.75386 1.21465 1.21587 1.20792 1.23230 0.98445 0.94492 0.91675 1.24102 0.97084 1.00617 0.90685 0.94760 0.91227 0.91494 0.89492 0.91302 0.88146 0.91531 0.92229 0.92102 0.91217 0.91547 0.95442 0.95241 0.91977 0.92214 0.92805 0.91481 0.91842 0.94677 0.91170 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.09 9.65 60.06 0.58 0.49 16 2 N -0.49 -4.76 6.56 -246.59 -1.62 -6.38 16 3 C 0.00 0.01 7.55 -2.76 -0.02 -0.01 16 4 C -0.11 -1.03 3.84 -89.68 -0.34 -1.37 16 5 C -0.11 -1.09 5.07 -26.73 -0.14 -1.22 16 6 C -0.11 -1.37 5.26 -26.73 -0.14 -1.51 16 7 C 0.05 0.72 4.76 -3.83 -0.02 0.70 16 8 N -0.52 -9.98 5.27 -230.45 -1.21 -11.19 16 9 C 0.04 0.77 5.79 -2.75 -0.02 0.75 16 10 C -0.12 -2.85 5.34 -25.37 -0.14 -2.98 16 11 C 0.04 0.93 2.62 -89.91 -0.24 0.69 16 12 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 13 C -0.60 -16.75 8.42 -34.44 -0.29 -17.04 16 14 H 0.05 1.34 7.78 -52.49 -0.41 0.94 16 15 C 0.02 0.57 5.33 -17.82 -0.10 0.48 16 16 N -0.91 -27.38 13.42 55.43 0.74 -26.64 16 17 Si 1.07 25.11 29.90 -169.99 -5.08 20.03 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C 0.05 1.05 5.95 -1.89 -0.01 1.04 16 22 C 0.00 0.04 7.52 -2.76 -0.02 0.01 16 23 H 0.03 0.26 7.62 -51.93 -0.40 -0.13 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.55 7.88 -51.93 -0.41 0.14 16 28 H 0.10 0.97 8.13 -51.93 -0.42 0.55 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.59 7.84 -51.93 -0.41 0.18 16 31 H 0.06 0.79 7.52 -51.93 -0.39 0.40 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.96 8.11 -51.93 -0.42 0.54 16 34 H 0.03 0.43 7.82 -51.93 -0.41 0.02 16 35 H 0.03 0.54 7.57 -51.93 -0.39 0.15 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.50 7.84 -51.93 -0.41 1.09 16 38 H 0.05 1.29 6.97 -51.93 -0.36 0.93 16 39 H 0.27 8.11 5.53 -40.82 -0.23 7.89 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.03 0.77 7.92 -51.93 -0.41 0.36 16 42 H 0.07 0.64 7.37 -51.93 -0.38 0.26 16 43 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 332.67 15.07 5.01 5.01 Total: -1.00 -29.75 332.67 -11.08 -40.82 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -8.04 Total: -1.70 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -0.88 Total: -19.97 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: -2.09 Total: -44.20 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.08 Total: 20.03 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.75 -11.08 -40.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260446364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.534 kcal (2) G-P(sol) polarization free energy of solvation -29.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds