Wall clock time and date at job start Mon Mar 30 2020 03:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.47962 * 111.00124 * 2 1 4 4 C 1.53939 * 86.18132 * 222.41735 * 3 2 1 5 5 C 1.53005 * 113.73359 * 138.07888 * 4 3 2 6 6 C 1.52994 * 109.47349 * 174.99871 * 5 4 3 7 7 C 1.53000 * 109.47399 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.46990 * 179.97438 * 7 6 5 9 9 C 1.47904 * 111.00054 * 69.88081 * 8 7 6 10 10 C 1.53995 * 107.05974 * 145.84166 * 9 8 7 11 11 C 1.54603 * 105.14000 * 358.77299 * 10 9 8 12 12 H 1.09000 * 110.72105 * 96.57841 * 11 10 9 13 13 C 1.50695 * 110.72429 * 219.68782 * 11 10 9 14 14 H 1.07995 * 120.00496 * 118.54590 * 13 11 10 15 15 C 1.37880 * 119.99572 * 298.54523 * 13 11 10 16 16 N 1.31511 * 120.00327 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 119.99951 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47297 * 59.99744 * 17 15 13 19 19 H 1.48503 * 109.47261 * 299.99924 * 17 15 13 20 20 H 1.48500 * 109.47454 * 179.97438 * 17 15 13 21 21 C 1.48539 * 110.99804 * 187.27379 * 8 7 6 22 22 C 1.47965 * 111.00177 * 260.63986 * 2 1 3 23 23 H 1.09005 * 109.47449 * 59.99910 * 1 2 3 24 24 H 1.09001 * 109.47283 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47572 * 299.99919 * 1 2 3 26 26 H 1.08995 * 113.76203 * 108.09989 * 3 2 1 27 27 H 1.09005 * 113.85632 * 336.74861 * 3 2 1 28 28 H 1.08996 * 113.73513 * 269.25177 * 4 3 2 29 29 H 1.09006 * 109.46880 * 54.99741 * 5 4 3 30 30 H 1.09003 * 109.46682 * 295.00160 * 5 4 3 31 31 H 1.09002 * 109.46887 * 59.99727 * 6 5 4 32 32 H 1.09003 * 109.47015 * 300.00437 * 6 5 4 33 33 H 1.09006 * 109.46597 * 60.00013 * 7 6 5 34 34 H 1.08990 * 109.47268 * 300.00463 * 7 6 5 35 35 H 1.08993 * 109.91739 * 26.48681 * 9 8 7 36 36 H 1.09002 * 109.91011 * 265.19066 * 9 8 7 37 37 H 1.08996 * 110.30427 * 239.85691 * 10 9 8 38 38 H 1.09000 * 110.30899 * 117.68338 * 10 9 8 39 39 H 0.97006 * 119.99995 * 359.97438 * 16 15 13 40 40 H 1.09002 * 110.66679 * 81.84200 * 21 8 7 41 41 H 1.08997 * 110.66367 * 318.71520 * 21 8 7 42 42 H 1.09000 * 113.75741 * 23.26791 * 22 2 1 43 43 H 1.09000 * 113.76280 * 251.89845 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0210 0.8792 -1.0361 5 6 3.2611 1.8570 -2.1882 6 6 4.3768 1.3214 -3.0877 7 6 4.6163 2.2988 -4.2401 8 7 5.6880 1.7848 -5.1033 9 6 5.2396 0.5896 -5.8503 10 6 5.9324 0.6297 -7.2250 11 6 6.7686 1.9300 -7.2179 12 1 7.8025 1.7222 -6.9421 13 6 6.7037 2.6132 -8.5595 14 1 6.2866 3.6061 -8.6403 15 6 7.1767 1.9706 -9.6839 16 7 7.6842 0.7613 -9.5857 17 14 7.0969 2.8176 -11.3469 18 1 7.8797 4.0787 -11.2983 19 1 5.6824 3.1256 -11.6782 20 1 7.6655 1.9224 -12.3863 21 6 6.0690 2.7860 -6.1323 22 6 1.9992 -0.2247 -1.3630 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 2.4459 1.6803 0.9482 27 1 1.3021 2.1212 -0.3935 28 1 3.9458 0.5069 -0.5954 29 1 3.5526 2.8274 -1.7863 30 1 2.3455 1.9648 -2.7699 31 1 4.0852 0.3510 -3.4894 32 1 5.2922 1.2135 -2.5059 33 1 4.9077 3.2694 -3.8386 34 1 3.7008 2.4063 -4.8217 35 1 4.1576 0.6164 -5.9788 36 1 5.5303 -0.3139 -5.3142 37 1 5.1896 0.6619 -8.0221 38 1 6.5819 -0.2371 -7.3468 39 1 7.7260 0.3215 -8.7220 40 1 6.7593 3.5205 -5.7174 41 1 5.1840 3.2751 -6.5393 42 1 1.3010 0.0441 -2.1556 43 1 2.4460 -1.2089 -1.5037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260446364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:53 Heat of formation + Delta-G solvation = -2.197283 kcal Electronic energy + Delta-G solvation = -18567.030251 eV Core-core repulsion = 15839.320665 eV Total energy + Delta-G solvation = -2727.709585 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.93813 -39.92465 -36.27669 -34.68129 -32.24812 -30.23300 -30.04476 -27.12891 -27.00829 -25.82177 -23.77428 -22.32517 -21.88913 -21.10716 -20.48110 -18.90014 -17.11331 -16.90260 -16.54718 -16.15553 -15.85997 -15.68534 -15.49099 -15.03773 -14.51113 -14.15720 -13.97522 -13.69478 -13.64724 -13.28633 -13.02109 -12.83237 -12.61208 -12.35378 -12.26577 -12.20996 -11.95191 -11.81765 -11.71668 -11.71027 -11.43278 -11.22850 -11.18494 -10.58345 -10.48628 -9.78205 -9.37281 -8.59142 -6.32961 1.53078 1.60819 1.80112 2.57409 3.00064 3.07325 3.20585 3.50169 3.72512 3.94086 3.97217 4.16163 4.18636 4.23173 4.28584 4.37201 4.43016 4.46363 4.52134 4.56346 4.64250 4.71468 4.72876 4.77798 4.83327 4.87475 4.89894 4.94145 4.97719 5.04943 5.11987 5.25319 5.31235 5.34659 5.39182 5.47927 5.61005 5.81696 6.07786 6.14938 6.19696 6.25207 6.65874 7.48318 8.79741 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.054095 B = 0.003226 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.485681 B = 8677.268261 C = 8771.657427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.507 5.507 3 C 0.006 3.994 4 C -0.108 4.108 5 C -0.100 4.100 6 C -0.101 4.101 7 C 0.046 3.954 8 N -0.527 5.527 9 C 0.051 3.949 10 C -0.114 4.114 11 C 0.024 3.976 12 H -0.003 1.003 13 C -0.611 4.611 14 H 0.046 0.954 15 C -0.030 4.030 16 N -0.937 5.937 17 Si 1.114 2.886 18 H -0.271 1.271 19 H -0.272 1.272 20 H -0.285 1.285 21 C 0.060 3.940 22 C 0.002 3.998 23 H 0.038 0.962 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.029 0.971 35 H 0.044 0.956 36 H 0.079 0.921 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.263 0.737 40 H 0.069 0.931 41 H 0.032 0.968 42 H 0.074 0.926 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.421 1.344 17.358 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.229 5.229 3 C -0.123 4.123 4 C -0.127 4.127 5 C -0.138 4.138 6 C -0.139 4.139 7 C -0.082 4.082 8 N -0.251 5.251 9 C -0.077 4.077 10 C -0.153 4.153 11 C 0.004 3.996 12 H 0.015 0.985 13 C -0.649 4.649 14 H 0.064 0.936 15 C -0.229 4.229 16 N -0.575 5.575 17 Si 0.935 3.065 18 H -0.196 1.196 19 H -0.197 1.197 20 H -0.210 1.210 21 C -0.067 4.067 22 C -0.127 4.127 23 H 0.057 0.943 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.110 0.890 27 H 0.096 0.904 28 H 0.114 0.886 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.047 0.953 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.050 0.950 42 H 0.092 0.908 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.501 0.568 16.673 20.847 hybrid contribution -1.184 0.634 0.297 1.375 sum -13.685 1.202 16.970 21.834 Atomic orbital electron populations 1.22881 0.89028 1.02633 1.01525 1.68447 1.09968 1.19531 1.24986 1.24038 0.96953 0.91049 1.00214 1.22930 0.98201 0.95770 0.95774 1.21490 0.98160 0.98859 0.95332 1.21433 0.99067 0.98041 0.95395 1.22374 0.91830 0.99209 0.94781 1.64754 1.36702 1.05135 1.18538 1.22772 0.97195 0.94574 0.93166 1.22423 0.98395 0.98900 0.95542 1.19683 0.93259 0.92706 0.93905 0.98471 1.22300 1.44751 1.03627 0.94218 0.93554 1.27223 0.92579 0.95957 1.07114 1.70892 1.43878 1.14304 1.28411 0.82976 0.77460 0.74790 0.71226 1.19638 1.19693 1.21024 1.22998 0.97990 0.94462 0.91265 1.24114 0.97256 1.00469 0.90841 0.94324 0.91166 0.90733 0.88993 0.90399 0.88590 0.90644 0.91856 0.92533 0.91550 0.90517 0.95295 0.93768 0.90270 0.94432 0.94290 0.92625 0.91298 0.94966 0.90826 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.17 9.65 127.69 1.23 1.06 16 2 N -0.51 -8.97 6.56 -934.06 -6.12 -15.09 16 3 C 0.01 0.09 7.55 86.41 0.65 0.74 16 4 C -0.11 -1.76 3.84 -10.14 -0.04 -1.80 16 5 C -0.10 -1.70 5.07 30.59 0.16 -1.54 16 6 C -0.10 -2.27 5.26 30.59 0.16 -2.11 16 7 C 0.05 1.30 4.76 86.30 0.41 1.71 16 8 N -0.53 -19.35 5.27 -883.01 -4.65 -24.00 16 9 C 0.05 1.91 5.79 86.45 0.50 2.41 16 10 C -0.11 -5.43 5.34 31.48 0.17 -5.26 16 11 C 0.02 1.22 2.62 -10.33 -0.03 1.20 16 12 H 0.00 -0.16 8.08 -2.39 -0.02 -0.18 16 13 C -0.61 -34.73 8.42 25.60 0.22 -34.51 16 14 H 0.05 2.59 7.78 -2.91 -0.02 2.56 16 15 C -0.03 -1.73 5.33 84.66 0.45 -1.28 16 16 N -0.94 -57.51 13.42 21.45 0.29 -57.22 16 17 Si 1.11 50.32 29.90 68.60 2.05 52.37 16 18 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 C 0.06 2.59 5.95 86.65 0.52 3.10 16 22 C 0.00 0.03 7.52 86.41 0.65 0.68 16 23 H 0.04 0.51 7.62 -2.38 -0.02 0.49 16 24 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.08 1.02 7.88 -2.38 -0.02 1.00 16 28 H 0.10 1.67 8.13 -2.39 -0.02 1.65 16 29 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.06 1.06 7.84 -2.39 -0.02 1.04 16 31 H 0.06 1.33 7.52 -2.39 -0.02 1.31 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.08 2.02 8.11 -2.38 -0.02 2.00 16 34 H 0.03 0.82 7.82 -2.39 -0.02 0.80 16 35 H 0.04 1.54 7.57 -2.39 -0.02 1.52 16 36 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.04 1.91 7.84 -2.39 -0.02 1.89 16 38 H 0.04 1.92 6.97 -2.39 -0.02 1.91 16 39 H 0.26 16.19 5.53 -92.70 -0.51 15.68 16 40 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 41 H 0.03 1.38 7.92 -2.39 -0.02 1.37 16 42 H 0.07 1.20 7.37 -2.39 -0.02 1.18 16 43 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -63.91 332.67 -2.20 -66.11 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 1.19 Total: 13.42 kcal Atomic # 6 Polarization: -40.65 SS G_CDS: 5.05 Total: -35.60 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -10.49 Total: -96.31 kcal Atomic # 14 Polarization: 50.32 SS G_CDS: 2.05 Total: 52.37 kcal Total: -63.91 -2.20 -66.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260446364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.915 kcal (2) G-P(sol) polarization free energy of solvation -63.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds