Wall clock time and date at job start Mon Mar 30 2020 03:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47485 * 110.99993 * 2 1 4 4 C 1.53512 * 87.92993 * 221.29826 * 3 2 1 5 5 C 1.52999 * 114.34360 * 139.68305 * 4 3 2 6 6 C 1.53005 * 109.47059 * 91.07512 * 5 4 3 7 7 N 1.46901 * 109.46812 * 180.02562 * 6 5 4 8 8 C 1.46844 * 111.00438 * 66.04884 * 7 6 5 9 9 C 1.53032 * 109.52799 * 174.15793 * 8 7 6 10 10 C 1.53124 * 109.27879 * 59.17638 * 9 8 7 11 11 C 1.53118 * 109.16097 * 302.35070 * 10 9 8 12 12 H 1.09000 * 109.50150 * 297.71253 * 11 10 9 13 13 C 1.50699 * 109.50436 * 177.63290 * 11 10 9 14 14 H 1.07994 * 120.00220 * 239.99622 * 13 11 10 15 15 C 1.37876 * 119.99653 * 60.00223 * 13 11 10 16 16 N 1.31507 * 120.00433 * 359.97438 * 15 13 11 17 17 Si 1.86805 * 119.99820 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47048 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47421 * 119.99301 * 17 15 13 20 20 H 1.48502 * 109.46969 * 239.99868 * 17 15 13 21 21 C 1.46848 * 111.00248 * 301.83427 * 7 6 5 22 22 C 1.47483 * 110.99863 * 264.02691 * 2 1 3 23 23 H 1.08992 * 109.47459 * 155.97085 * 1 2 3 24 24 H 1.09004 * 109.47040 * 275.97235 * 1 2 3 25 25 H 1.09000 * 109.47033 * 35.97188 * 1 2 3 26 26 H 1.09001 * 113.47179 * 336.06054 * 3 2 1 27 27 H 1.08991 * 113.48000 * 106.52770 * 3 2 1 28 28 H 1.08997 * 114.16778 * 272.37743 * 4 3 2 29 29 H 1.08999 * 109.47109 * 211.07432 * 5 4 3 30 30 H 1.09005 * 109.47374 * 331.07268 * 5 4 3 31 31 H 1.08999 * 109.47095 * 299.99929 * 6 5 4 32 32 H 1.08993 * 109.47024 * 60.00023 * 6 5 4 33 33 H 1.09007 * 109.45716 * 294.17491 * 8 7 6 34 34 H 1.09004 * 109.46078 * 54.14751 * 8 7 6 35 35 H 1.09001 * 109.50583 * 179.11371 * 9 8 7 36 36 H 1.08997 * 109.50342 * 299.20003 * 9 8 7 37 37 H 1.09002 * 109.51894 * 62.25028 * 10 9 8 38 38 H 1.08998 * 109.52544 * 182.37989 * 10 9 8 39 39 H 0.96999 * 120.00458 * 180.02562 * 16 15 13 40 40 H 1.09005 * 109.46298 * 305.85960 * 21 7 6 41 41 H 1.08997 * 109.46014 * 65.82381 * 21 7 6 42 42 H 1.08992 * 113.47819 * 253.46888 * 22 2 1 43 43 H 1.09003 * 113.47067 * 23.93842 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9976 1.3769 0.0000 4 6 3.0537 0.9121 -1.0125 5 6 3.3395 1.9157 -2.1314 6 6 4.4883 2.8347 -1.7110 7 7 4.7622 3.7987 -2.7851 8 6 3.6308 4.7163 -2.9700 9 6 4.0065 5.7925 -3.9910 10 6 4.3683 5.1241 -5.3203 11 6 5.5169 4.1380 -5.0907 12 1 6.3964 4.6788 -4.7410 13 6 5.8406 3.4330 -6.3827 14 1 5.7586 2.3581 -6.4466 15 6 6.2417 4.1605 -7.4832 16 7 6.3412 5.4695 -7.4056 17 14 6.6422 3.2867 -9.0850 18 1 6.4521 1.8241 -8.9120 19 1 5.7407 3.7801 -10.1569 20 1 8.0529 3.5611 -9.4592 21 6 5.0974 3.1097 -4.0379 22 6 1.9976 -0.1433 -1.3694 23 1 -0.3634 -0.9385 -0.4184 24 1 -0.3633 0.1069 1.0221 25 1 -0.3633 0.8317 -0.6036 26 1 1.3001 2.1097 -0.4057 27 1 2.4187 1.6804 0.9584 28 1 3.9571 0.5039 -0.5594 29 1 3.6168 1.3791 -3.0387 30 1 2.4473 2.5127 -2.3207 31 1 4.2110 3.3713 -0.8037 32 1 5.3804 2.2378 -1.5218 33 1 2.7665 4.1588 -3.3313 34 1 3.3865 5.1881 -2.0182 35 1 3.1610 6.4641 -4.1397 36 1 4.8617 6.3598 -3.6237 37 1 3.5008 4.5892 -5.7069 38 1 4.6773 5.8840 -6.0379 39 1 6.6230 5.9813 -8.1799 40 1 5.9183 2.4146 -3.8617 41 1 4.2263 2.5598 -4.3941 42 1 2.4187 -1.1280 -1.5715 43 1 1.3000 0.1840 -2.1404 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260451213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:56 Heat of formation + Delta-G solvation = 24.883446 kcal Electronic energy + Delta-G solvation = -19247.782254 eV Core-core repulsion = 16521.246977 eV Total energy + Delta-G solvation = -2726.535277 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.34823 -38.33189 -34.39236 -32.54818 -31.10306 -29.84371 -28.15558 -26.09704 -24.92740 -24.64503 -22.59351 -21.47455 -20.73141 -19.81864 -18.29646 -16.40233 -15.99245 -15.54157 -15.24646 -14.80650 -14.56197 -14.18205 -13.82834 -13.49627 -13.12387 -12.85355 -12.75687 -12.47535 -12.12053 -11.93964 -11.68328 -11.45794 -11.13497 -11.00309 -10.92799 -10.80534 -10.63678 -10.60110 -10.23825 -9.97198 -9.78954 -9.45167 -9.12140 -9.00321 -8.67034 -8.28618 -7.55459 -5.95687 -4.01760 3.30636 3.38777 3.42325 3.87813 4.28399 4.42009 4.56835 4.68822 4.85850 5.08465 5.21331 5.29609 5.33422 5.34381 5.43306 5.51005 5.56269 5.60412 5.64239 5.70592 5.83813 5.91046 6.02270 6.07179 6.12140 6.16782 6.37446 6.38818 6.48635 6.55701 6.75012 6.78933 6.84517 7.01094 7.24517 7.43475 7.70937 7.77947 7.87568 8.11457 8.20154 8.50733 9.02794 9.62564 11.10291 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.029715 B = 0.004535 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.043867 B = 6172.781175 C = 6699.049855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.481 5.481 3 C 0.001 3.999 4 C -0.107 4.107 5 C -0.149 4.149 6 C 0.059 3.941 7 N -0.538 5.538 8 C 0.062 3.938 9 C -0.119 4.119 10 C -0.110 4.110 11 C 0.053 3.947 12 H 0.033 0.967 13 C -0.513 4.513 14 H 0.053 0.947 15 C 0.062 3.938 16 N -0.888 5.888 17 Si 0.889 3.111 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.066 3.934 22 C -0.002 4.002 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.035 0.965 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.023 0.977 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.060 0.940 37 H 0.028 0.972 38 H 0.090 0.910 39 H 0.259 0.741 40 H 0.057 0.943 41 H 0.022 0.978 42 H 0.083 0.917 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.236 -6.151 12.345 16.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 N -0.203 5.203 3 C -0.128 4.128 4 C -0.126 4.126 5 C -0.189 4.189 6 C -0.070 4.070 7 N -0.260 5.260 8 C -0.066 4.066 9 C -0.156 4.156 10 C -0.148 4.148 11 C 0.034 3.966 12 H 0.051 0.949 13 C -0.552 4.552 14 H 0.072 0.928 15 C -0.139 4.139 16 N -0.527 5.527 17 Si 0.717 3.283 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.061 4.061 22 C -0.131 4.131 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.054 0.946 26 H 0.086 0.914 27 H 0.101 0.899 28 H 0.120 0.880 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.047 0.953 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.040 0.960 42 H 0.102 0.898 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.635 -6.195 12.912 16.723 hybrid contribution -1.033 -0.403 -1.779 2.096 sum -9.668 -6.598 11.133 16.154 Atomic orbital electron populations 1.22884 0.89868 1.01308 1.02098 1.68859 1.09057 1.19551 1.22824 1.23991 0.97197 0.91137 1.00483 1.22699 0.97404 0.96128 0.96408 1.22267 1.00520 0.97714 0.98355 1.22165 0.96496 0.93248 0.95080 1.62213 1.37527 1.18465 1.07825 1.22018 0.91523 0.94636 0.98377 1.21688 0.99905 0.96745 0.97312 1.21641 0.97958 1.00537 0.94650 1.18678 0.94383 0.91970 0.91557 0.94856 1.21194 1.44893 0.93270 0.95850 0.92834 1.24933 0.95446 0.94813 0.98667 1.69898 1.47706 1.05130 1.30000 0.86591 0.77974 0.79879 0.83862 1.19867 1.21133 1.21040 1.22310 0.98108 0.97160 0.88492 1.23912 0.97286 1.00701 0.91202 0.91458 0.91213 0.94608 0.91360 0.89860 0.87980 0.90810 0.92023 0.91677 0.91115 0.95854 0.92656 0.93695 0.92131 0.95309 0.89171 0.93147 0.92404 0.95984 0.89825 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 9.69 60.07 0.58 0.47 16 2 N -0.48 -5.30 6.73 -252.94 -1.70 -7.00 16 3 C 0.00 0.01 7.28 -7.53 -0.05 -0.05 16 4 C -0.11 -1.18 3.98 -90.09 -0.36 -1.54 16 5 C -0.15 -1.93 4.43 -26.73 -0.12 -2.05 16 6 C 0.06 0.84 5.35 -3.82 -0.02 0.82 16 7 N -0.54 -9.78 4.86 -234.67 -1.14 -10.92 16 8 C 0.06 1.09 5.05 -3.84 -0.02 1.07 16 9 C -0.12 -2.33 6.09 -26.65 -0.16 -2.49 16 10 C -0.11 -2.60 5.02 -26.61 -0.13 -2.74 16 11 C 0.05 1.32 2.26 -91.69 -0.21 1.12 16 12 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 13 C -0.51 -14.07 8.57 -34.44 -0.30 -14.36 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 16 N -0.89 -25.40 11.35 55.43 0.63 -24.77 16 17 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 C 0.07 1.39 4.06 -3.83 -0.02 1.37 16 22 C 0.00 -0.02 7.30 -7.53 -0.05 -0.08 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.04 0.32 7.52 -51.93 -0.39 -0.07 16 26 H 0.07 0.70 7.29 -51.93 -0.38 0.32 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.10 1.12 8.12 -51.93 -0.42 0.70 16 29 H 0.07 1.07 6.51 -51.93 -0.34 0.74 16 30 H 0.06 0.83 6.36 -51.93 -0.33 0.50 16 31 H 0.06 0.85 8.06 -51.93 -0.42 0.43 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.02 0.40 6.75 -51.93 -0.35 0.05 16 34 H 0.05 0.85 8.06 -51.93 -0.42 0.43 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 2.40 6.15 -51.93 -0.32 2.08 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 40 H 0.06 1.21 8.12 -51.93 -0.42 0.79 16 41 H 0.02 0.46 6.61 -51.93 -0.34 0.12 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.73 7.87 -51.93 -0.41 0.32 16 LS Contribution 324.93 15.07 4.90 4.90 Total: -1.00 -28.19 324.93 -11.18 -39.36 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -7.89 Total: -0.98 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -0.95 Total: -16.82 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: -2.21 Total: -42.69 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.19 -11.18 -39.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260451213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.246 kcal (2) G-P(sol) polarization free energy of solvation -28.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds