Wall clock time and date at job start Mon Mar 30 2020 03:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47485 * 110.99993 * 2 1 4 4 C 1.53512 * 87.92993 * 221.29826 * 3 2 1 5 5 C 1.52999 * 114.34360 * 139.68305 * 4 3 2 6 6 C 1.53005 * 109.47059 * 91.07512 * 5 4 3 7 7 N 1.46901 * 109.46812 * 180.02562 * 6 5 4 8 8 C 1.46844 * 111.00438 * 66.04884 * 7 6 5 9 9 C 1.53032 * 109.52799 * 174.15793 * 8 7 6 10 10 C 1.53124 * 109.27879 * 59.17638 * 9 8 7 11 11 C 1.53118 * 109.16097 * 302.35070 * 10 9 8 12 12 H 1.09000 * 109.50150 * 297.71253 * 11 10 9 13 13 C 1.50699 * 109.50436 * 177.63290 * 11 10 9 14 14 H 1.07994 * 120.00220 * 239.99622 * 13 11 10 15 15 C 1.37876 * 119.99653 * 60.00223 * 13 11 10 16 16 N 1.31507 * 120.00433 * 359.97438 * 15 13 11 17 17 Si 1.86805 * 119.99820 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47048 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47421 * 119.99301 * 17 15 13 20 20 H 1.48502 * 109.46969 * 239.99868 * 17 15 13 21 21 C 1.46848 * 111.00248 * 301.83427 * 7 6 5 22 22 C 1.47483 * 110.99863 * 264.02691 * 2 1 3 23 23 H 1.08992 * 109.47459 * 155.97085 * 1 2 3 24 24 H 1.09004 * 109.47040 * 275.97235 * 1 2 3 25 25 H 1.09000 * 109.47033 * 35.97188 * 1 2 3 26 26 H 1.09001 * 113.47179 * 336.06054 * 3 2 1 27 27 H 1.08991 * 113.48000 * 106.52770 * 3 2 1 28 28 H 1.08997 * 114.16778 * 272.37743 * 4 3 2 29 29 H 1.08999 * 109.47109 * 211.07432 * 5 4 3 30 30 H 1.09005 * 109.47374 * 331.07268 * 5 4 3 31 31 H 1.08999 * 109.47095 * 299.99929 * 6 5 4 32 32 H 1.08993 * 109.47024 * 60.00023 * 6 5 4 33 33 H 1.09007 * 109.45716 * 294.17491 * 8 7 6 34 34 H 1.09004 * 109.46078 * 54.14751 * 8 7 6 35 35 H 1.09001 * 109.50583 * 179.11371 * 9 8 7 36 36 H 1.08997 * 109.50342 * 299.20003 * 9 8 7 37 37 H 1.09002 * 109.51894 * 62.25028 * 10 9 8 38 38 H 1.08998 * 109.52544 * 182.37989 * 10 9 8 39 39 H 0.96999 * 120.00458 * 180.02562 * 16 15 13 40 40 H 1.09005 * 109.46298 * 305.85960 * 21 7 6 41 41 H 1.08997 * 109.46014 * 65.82381 * 21 7 6 42 42 H 1.08992 * 113.47819 * 253.46888 * 22 2 1 43 43 H 1.09003 * 113.47067 * 23.93842 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9976 1.3769 0.0000 4 6 3.0537 0.9121 -1.0125 5 6 3.3395 1.9157 -2.1314 6 6 4.4883 2.8347 -1.7110 7 7 4.7622 3.7987 -2.7851 8 6 3.6308 4.7163 -2.9700 9 6 4.0065 5.7925 -3.9910 10 6 4.3683 5.1241 -5.3203 11 6 5.5169 4.1380 -5.0907 12 1 6.3964 4.6788 -4.7410 13 6 5.8406 3.4330 -6.3827 14 1 5.7586 2.3581 -6.4466 15 6 6.2417 4.1605 -7.4832 16 7 6.3412 5.4695 -7.4056 17 14 6.6422 3.2867 -9.0850 18 1 6.4521 1.8241 -8.9120 19 1 5.7407 3.7801 -10.1569 20 1 8.0529 3.5611 -9.4592 21 6 5.0974 3.1097 -4.0379 22 6 1.9976 -0.1433 -1.3694 23 1 -0.3634 -0.9385 -0.4184 24 1 -0.3633 0.1069 1.0221 25 1 -0.3633 0.8317 -0.6036 26 1 1.3001 2.1097 -0.4057 27 1 2.4187 1.6804 0.9584 28 1 3.9571 0.5039 -0.5594 29 1 3.6168 1.3791 -3.0387 30 1 2.4473 2.5127 -2.3207 31 1 4.2110 3.3713 -0.8037 32 1 5.3804 2.2378 -1.5218 33 1 2.7665 4.1588 -3.3313 34 1 3.3865 5.1881 -2.0182 35 1 3.1610 6.4641 -4.1397 36 1 4.8617 6.3598 -3.6237 37 1 3.5008 4.5892 -5.7069 38 1 4.6773 5.8840 -6.0379 39 1 6.6230 5.9813 -8.1799 40 1 5.9183 2.4146 -3.8617 41 1 4.2263 2.5598 -4.3941 42 1 2.4187 -1.1280 -1.5715 43 1 1.3000 0.1840 -2.1404 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260451213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:55 Heat of formation + Delta-G solvation = 5.878420 kcal Electronic energy + Delta-G solvation = -19248.606374 eV Core-core repulsion = 16521.246977 eV Total energy + Delta-G solvation = -2727.359397 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.22211 -39.82692 -36.03328 -34.19919 -32.35041 -31.66061 -29.23207 -26.96613 -26.86241 -25.89149 -23.72117 -23.14082 -22.17463 -20.69822 -19.93009 -18.41568 -16.89071 -16.84559 -16.37552 -16.14303 -15.94854 -15.66563 -15.03659 -14.87508 -14.59569 -14.22428 -14.12723 -13.67416 -13.61523 -13.21786 -13.03752 -12.87629 -12.68500 -12.49519 -12.36858 -12.12072 -11.94926 -11.74127 -11.71129 -11.59589 -11.35089 -11.10696 -10.82302 -10.63197 -10.36949 -9.92912 -8.98090 -8.07069 -6.21193 1.40230 1.42042 1.53235 2.43400 3.07080 3.19844 3.23977 3.42187 3.73507 4.09888 4.20439 4.23430 4.28310 4.31408 4.41179 4.47576 4.53431 4.53871 4.56894 4.67764 4.71523 4.77512 4.82272 4.84632 4.93509 4.94385 4.96975 5.08307 5.15615 5.21509 5.27163 5.29905 5.41044 5.44325 5.55232 5.64984 5.99407 6.06417 6.15897 6.24501 6.45030 6.49341 6.92411 7.46833 8.97693 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.029715 B = 0.004535 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.043867 B = 6172.781175 C = 6699.049855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.495 5.495 3 C 0.005 3.995 4 C -0.102 4.102 5 C -0.137 4.137 6 C 0.060 3.940 7 N -0.551 5.551 8 C 0.067 3.933 9 C -0.113 4.113 10 C -0.103 4.103 11 C 0.049 3.951 12 H -0.006 1.006 13 C -0.535 4.535 14 H 0.051 0.949 15 C 0.013 3.987 16 N -0.916 5.916 17 Si 0.953 3.047 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.281 1.281 21 C 0.083 3.917 22 C -0.002 4.002 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.038 0.962 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.029 0.971 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.021 0.979 38 H 0.055 0.945 39 H 0.260 0.740 40 H 0.052 0.948 41 H 0.021 0.979 42 H 0.084 0.916 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.385 -6.908 13.486 18.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 N -0.217 5.217 3 C -0.123 4.123 4 C -0.122 4.122 5 C -0.176 4.176 6 C -0.067 4.067 7 N -0.274 5.274 8 C -0.061 4.061 9 C -0.151 4.151 10 C -0.141 4.141 11 C 0.031 3.969 12 H 0.012 0.988 13 C -0.573 4.573 14 H 0.069 0.931 15 C -0.185 4.185 16 N -0.556 5.556 17 Si 0.779 3.221 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.207 1.207 21 C -0.044 4.044 22 C -0.131 4.131 23 H 0.090 0.910 24 H 0.096 0.904 25 H 0.057 0.943 26 H 0.090 0.910 27 H 0.109 0.891 28 H 0.122 0.878 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.040 0.960 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.039 0.961 42 H 0.102 0.898 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.792 -6.961 14.072 18.503 hybrid contribution -0.666 -0.155 -2.105 2.214 sum -10.459 -7.116 11.967 17.413 Atomic orbital electron populations 1.22921 0.88829 1.01729 1.02745 1.68853 1.10246 1.19948 1.22695 1.23982 0.96808 0.91032 1.00525 1.22612 0.97793 0.95804 0.95980 1.22100 0.99702 0.97621 0.98211 1.22237 0.97218 0.92985 0.94287 1.62130 1.38646 1.19509 1.07108 1.22007 0.91158 0.93817 0.99070 1.21611 1.00348 0.97571 0.95581 1.21443 0.96957 0.99394 0.96310 1.18620 0.93424 0.92855 0.92043 0.98805 1.21565 1.45139 0.93371 0.97246 0.93082 1.25718 0.95339 0.95494 1.01967 1.70042 1.48232 1.06411 1.30875 0.85583 0.77744 0.79019 0.79763 1.19136 1.20621 1.20658 1.21931 0.97784 0.95746 0.88970 1.23906 0.97203 1.00655 0.91360 0.91000 0.90434 0.94298 0.90961 0.89135 0.87760 0.92731 0.92102 0.89484 0.90963 0.95297 0.89477 0.91388 0.93282 0.96000 0.92592 0.93119 0.92964 0.96062 0.89767 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.21 9.69 127.69 1.24 1.02 16 2 N -0.50 -9.80 6.73 -954.17 -6.42 -16.22 16 3 C 0.01 0.09 7.28 83.58 0.61 0.70 16 4 C -0.10 -2.04 3.98 -10.45 -0.04 -2.08 16 5 C -0.14 -3.28 4.43 30.60 0.14 -3.14 16 6 C 0.06 1.60 5.35 86.30 0.46 2.06 16 7 N -0.55 -19.30 4.86 -896.36 -4.35 -23.65 16 8 C 0.07 2.18 5.05 86.32 0.44 2.62 16 9 C -0.11 -4.35 6.09 30.65 0.19 -4.17 16 10 C -0.10 -4.98 5.02 30.68 0.15 -4.82 16 11 C 0.05 2.55 2.26 -11.49 -0.03 2.52 16 12 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 13 C -0.53 -29.98 8.57 25.60 0.22 -29.77 16 14 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 15 C 0.01 0.75 5.30 84.66 0.45 1.20 16 16 N -0.92 -53.79 11.35 21.45 0.24 -53.55 16 17 Si 0.95 44.05 29.54 68.60 2.03 46.08 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 21 C 0.08 3.51 4.06 86.32 0.35 3.86 16 22 C 0.00 -0.04 7.30 83.58 0.61 0.57 16 23 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 25 H 0.04 0.60 7.52 -2.39 -0.02 0.58 16 26 H 0.07 1.26 7.29 -2.39 -0.02 1.25 16 27 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.10 2.05 8.12 -2.39 -0.02 2.03 16 29 H 0.05 1.53 6.51 -2.39 -0.02 1.51 16 30 H 0.06 1.48 6.36 -2.38 -0.02 1.46 16 31 H 0.09 1.96 8.06 -2.39 -0.02 1.94 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.03 0.92 6.75 -2.38 -0.02 0.91 16 34 H 0.09 2.34 8.06 -2.38 -0.02 2.32 16 35 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.06 3.08 6.15 -2.39 -0.01 3.06 16 39 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 40 H 0.05 2.21 8.12 -2.38 -0.02 2.19 16 41 H 0.02 0.89 6.61 -2.39 -0.02 0.88 16 42 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 43 H 0.07 1.34 7.87 -2.39 -0.02 1.32 16 Total: -1.00 -61.29 324.93 -2.78 -64.07 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.94 Total: 12.70 kcal Atomic # 6 Polarization: -34.21 SS G_CDS: 4.78 Total: -29.43 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -10.53 Total: -93.42 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -61.29 -2.78 -64.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260451213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.947 kcal (2) G-P(sol) polarization free energy of solvation -61.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds