Wall clock time and date at job start Mon Mar 30 2020 03:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47963 * 111.00105 * 2 1 4 4 C 1.53936 * 86.18123 * 222.41886 * 3 2 1 5 5 C 1.53001 * 113.73514 * 138.08041 * 4 3 2 6 6 C 1.52998 * 109.47409 * 176.89822 * 5 4 3 7 7 N 1.46897 * 109.47268 * 180.02562 * 6 5 4 8 8 C 1.46854 * 110.99665 * 293.95495 * 7 6 5 9 9 C 1.53037 * 109.51886 * 185.84309 * 8 7 6 10 10 C 1.53126 * 109.27801 * 300.81620 * 9 8 7 11 11 C 1.53124 * 109.15878 * 57.65645 * 10 9 8 12 12 H 1.08999 * 109.50059 * 62.28737 * 11 10 9 13 13 C 1.50696 * 109.50007 * 182.40592 * 11 10 9 14 14 H 1.07997 * 120.00077 * 120.00524 * 13 11 10 15 15 C 1.37872 * 120.00039 * 299.99707 * 13 11 10 16 16 N 1.31516 * 120.00300 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 120.00131 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46842 * 90.00399 * 17 15 13 19 19 H 1.48495 * 109.47554 * 210.00488 * 17 15 13 20 20 H 1.48498 * 109.47227 * 330.00616 * 17 15 13 21 21 C 1.46844 * 111.00090 * 58.16171 * 7 6 5 22 22 C 1.48195 * 111.07200 * 260.56751 * 2 1 3 23 23 H 1.08993 * 109.46896 * 59.99838 * 1 2 3 24 24 H 1.08999 * 109.46888 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46688 * 299.99838 * 1 2 3 26 26 H 1.08996 * 113.75873 * 108.10119 * 3 2 1 27 27 H 1.08993 * 113.75657 * 336.73353 * 3 2 1 28 28 H 1.09000 * 113.72940 * 269.25683 * 4 3 2 29 29 H 1.08999 * 109.47199 * 56.89579 * 5 4 3 30 30 H 1.09004 * 109.46972 * 296.90009 * 5 4 3 31 31 H 1.08998 * 109.46651 * 59.99512 * 6 5 4 32 32 H 1.09003 * 109.46734 * 300.00278 * 6 5 4 33 33 H 1.08994 * 109.46310 * 65.82535 * 8 7 6 34 34 H 1.09004 * 109.45281 * 305.84691 * 8 7 6 35 35 H 1.09000 * 109.50480 * 180.88135 * 9 8 7 36 36 H 1.09002 * 109.53848 * 60.77851 * 9 8 7 37 37 H 1.08998 * 109.52297 * 177.56592 * 10 9 8 38 38 H 1.08999 * 109.51925 * 297.75795 * 10 9 8 39 39 H 0.97000 * 120.00526 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.46133 * 294.17882 * 21 7 6 41 41 H 1.09002 * 109.46165 * 54.15521 * 21 7 6 42 42 H 1.09001 * 113.75355 * 23.23777 * 22 2 1 43 43 H 1.08995 * 113.82544 * 251.81164 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8793 -1.0361 5 6 3.2612 1.8570 -2.1882 6 6 4.3439 1.2987 -3.1138 7 7 4.5748 2.2377 -4.2196 8 6 3.3915 2.3338 -5.0840 9 6 3.7162 3.2038 -6.3005 10 6 4.1400 4.5970 -5.8269 11 6 5.3438 4.4647 -4.8899 12 1 6.1823 4.0298 -5.4339 13 6 5.7306 5.8262 -4.3726 14 1 5.7162 6.0246 -3.3111 15 6 6.1029 6.8186 -5.2543 16 7 6.1201 6.5772 -6.5470 17 14 6.5830 8.5061 -4.6130 18 1 8.0438 8.5376 -4.3478 19 1 6.2416 9.5364 -5.6263 20 1 5.8454 8.7857 -3.3548 21 6 4.9719 3.5581 -3.7145 22 6 2.0019 -0.2266 -1.3642 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 2.4460 1.6802 0.9482 27 1 1.3011 2.1197 -0.3941 28 1 3.9458 0.5068 -0.5953 29 1 3.5853 2.8176 -1.7879 30 1 2.3366 1.9908 -2.7498 31 1 4.0197 0.3380 -3.5140 32 1 5.2684 1.1649 -2.5521 33 1 2.5695 2.7820 -4.5260 34 1 3.1034 1.3367 -5.4172 35 1 2.8332 3.2879 -6.9340 36 1 4.5289 2.7493 -6.8672 37 1 4.4137 5.2068 -6.6879 38 1 3.3137 5.0675 -5.2941 39 1 6.3817 7.2754 -7.1674 40 1 4.1424 4.0005 -3.1628 41 1 5.8316 3.4504 -3.0530 42 1 1.3043 0.0405 -2.1580 43 1 2.4506 -1.2101 -1.5038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260451216.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:58 Heat of formation + Delta-G solvation = 22.424931 kcal Electronic energy + Delta-G solvation = -19261.849699 eV Core-core repulsion = 16535.207813 eV Total energy + Delta-G solvation = -2726.641886 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.13823 -38.30585 -34.37343 -32.52384 -31.05502 -29.84396 -28.10034 -26.27556 -24.92693 -24.60605 -22.52743 -21.47410 -20.73515 -19.75443 -18.29310 -16.40387 -16.02627 -15.51337 -15.23213 -14.78782 -14.54263 -14.18536 -13.81212 -13.48199 -13.09836 -12.88062 -12.74857 -12.47810 -12.11291 -11.93719 -11.67125 -11.48079 -11.13524 -11.00360 -10.91330 -10.71596 -10.70773 -10.62725 -10.28306 -9.98707 -9.79080 -9.44777 -9.02449 -8.98986 -8.67845 -8.28281 -7.55489 -5.95572 -4.01757 3.31736 3.38449 3.41206 3.78558 4.34477 4.41850 4.55510 4.69298 4.89267 5.10103 5.23074 5.31089 5.33109 5.34385 5.44394 5.51149 5.56975 5.61605 5.65339 5.70552 5.84201 5.90798 6.03089 6.10545 6.12354 6.17661 6.37554 6.38483 6.48511 6.55498 6.74845 6.78894 6.84555 7.00976 7.24442 7.43255 7.70769 7.77669 7.87358 8.11323 8.20151 8.50646 9.02516 9.62507 11.10367 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.030026 B = 0.004548 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.289324 B = 6154.896578 C = 6666.142300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.489 5.489 3 C 0.002 3.998 4 C -0.107 4.107 5 C -0.151 4.151 6 C 0.059 3.941 7 N -0.537 5.537 8 C 0.063 3.937 9 C -0.119 4.119 10 C -0.110 4.110 11 C 0.053 3.947 12 H 0.033 0.967 13 C -0.514 4.514 14 H 0.053 0.947 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.066 3.934 22 C 0.004 3.996 23 H 0.034 0.966 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.023 0.977 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.028 0.972 39 H 0.259 0.741 40 H 0.022 0.978 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.956 -11.352 8.104 16.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.211 5.211 3 C -0.127 4.127 4 C -0.126 4.126 5 C -0.191 4.191 6 C -0.070 4.070 7 N -0.260 5.260 8 C -0.065 4.065 9 C -0.156 4.156 10 C -0.148 4.148 11 C 0.035 3.965 12 H 0.051 0.949 13 C -0.553 4.553 14 H 0.071 0.929 15 C -0.138 4.138 16 N -0.527 5.527 17 Si 0.717 3.283 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.061 4.061 22 C -0.124 4.124 23 H 0.052 0.948 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.105 0.895 27 H 0.087 0.913 28 H 0.117 0.883 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.047 0.953 39 H 0.069 0.931 40 H 0.040 0.960 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.386 -11.897 8.172 16.693 hybrid contribution -0.923 1.823 0.213 2.054 sum -9.309 -10.074 8.385 16.076 Atomic orbital electron populations 1.22847 0.89988 1.02175 1.00987 1.68487 1.08824 1.18939 1.24843 1.24015 0.97279 0.91132 1.00257 1.22928 0.98082 0.95782 0.95850 1.22315 1.00723 0.99488 0.96571 1.22160 0.97219 0.96075 0.91544 1.62219 1.34051 1.11480 1.18269 1.22018 0.91019 0.98597 0.94914 1.21689 0.99812 0.98264 0.95884 1.21644 0.97739 0.93277 1.02134 1.18674 0.94165 0.92706 0.91005 0.94866 1.21154 1.44883 0.96266 0.92981 0.92894 1.24932 0.95473 0.98562 0.94867 1.69891 1.48243 1.33324 1.01290 0.86642 0.78831 0.84215 0.78571 1.20699 1.21298 1.20044 1.22311 0.97892 0.86959 0.98909 1.24122 0.97187 1.00400 0.90708 0.94777 0.91330 0.91515 0.89478 0.91302 0.88275 0.90865 0.92076 0.91690 0.91144 0.95857 0.92669 0.93695 0.92131 0.89161 0.95300 0.93089 0.95983 0.92416 0.91281 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 9.65 60.07 0.58 0.48 16 2 N -0.49 -5.38 6.55 -246.37 -1.61 -6.99 16 3 C 0.00 0.02 7.56 -2.76 -0.02 0.00 16 4 C -0.11 -1.18 3.82 -89.69 -0.34 -1.52 16 5 C -0.15 -1.97 4.35 -26.73 -0.12 -2.09 16 6 C 0.06 0.84 5.35 -3.83 -0.02 0.82 16 7 N -0.54 -9.80 4.86 -234.67 -1.14 -10.94 16 8 C 0.06 1.09 5.05 -3.83 -0.02 1.07 16 9 C -0.12 -2.33 6.09 -26.65 -0.16 -2.49 16 10 C -0.11 -2.61 5.02 -26.60 -0.13 -2.74 16 11 C 0.05 1.34 2.26 -91.69 -0.21 1.13 16 12 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 13 C -0.51 -14.10 8.56 -34.44 -0.29 -14.40 16 14 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 15 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 16 N -0.89 -25.42 11.35 55.43 0.63 -24.79 16 17 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.07 1.39 4.06 -3.84 -0.02 1.37 16 22 C 0.00 0.05 7.54 -2.63 -0.02 0.03 16 23 H 0.03 0.31 7.63 -51.93 -0.40 -0.09 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.74 7.88 -51.93 -0.41 0.33 16 28 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.07 1.07 6.50 -51.93 -0.34 0.73 16 30 H 0.06 0.83 6.42 -51.93 -0.33 0.49 16 31 H 0.06 0.85 8.06 -51.93 -0.42 0.43 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.02 0.40 6.75 -51.93 -0.35 0.05 16 34 H 0.05 0.85 8.06 -51.93 -0.42 0.43 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.09 2.40 6.15 -51.93 -0.32 2.08 16 38 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.02 0.46 6.61 -51.93 -0.34 0.12 16 41 H 0.06 1.21 8.12 -51.93 -0.42 0.79 16 42 H 0.07 0.71 7.40 -51.93 -0.38 0.33 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 325.31 15.07 4.90 4.90 Total: -1.00 -28.19 325.31 -11.01 -39.20 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -7.90 Total: -0.93 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -0.87 Total: -16.70 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: -2.13 Total: -42.72 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.19 -11.01 -39.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260451216.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.629 kcal (2) G-P(sol) polarization free energy of solvation -28.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds