Wall clock time and date at job start Mon Mar 30 2020 05:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46890 * 111.00222 * 2 1 4 4 C 1.50700 * 109.47078 * 66.04437 * 3 2 1 5 5 H 1.08000 * 119.99868 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00255 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99751 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00316 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47386 * 179.97438 * 8 6 4 10 10 H 1.48498 * 109.47092 * 299.99926 * 8 6 4 11 11 H 1.48505 * 109.47039 * 60.00193 * 8 6 4 12 12 C 1.46902 * 110.99637 * 236.04524 * 2 1 3 13 13 C 1.52998 * 109.47271 * 287.77011 * 12 2 1 14 14 H 1.09004 * 109.46242 * 55.90126 * 13 12 2 15 15 C 1.53040 * 109.46257 * 175.86007 * 13 12 2 16 16 C 1.53120 * 109.27997 * 179.19586 * 15 13 12 17 17 C 1.53123 * 109.16090 * 302.35226 * 16 15 13 18 18 C 1.53034 * 109.28014 * 57.65220 * 17 16 15 19 19 N 1.46842 * 109.46682 * 295.91665 * 13 12 2 20 20 C 1.46902 * 110.99659 * 54.14483 * 19 13 12 21 21 C 1.52999 * 117.49685 * 246.85784 * 20 19 13 22 22 C 1.53001 * 117.49797 * 178.20171 * 20 19 13 23 23 H 1.09007 * 109.46810 * 58.19868 * 1 2 3 24 24 H 1.09004 * 109.46704 * 178.19531 * 1 2 3 25 25 H 1.08995 * 109.47118 * 298.19604 * 1 2 3 26 26 H 1.09007 * 109.46954 * 306.04855 * 3 2 1 27 27 H 1.08995 * 109.47413 * 186.04830 * 3 2 1 28 28 H 0.97000 * 120.00226 * 0.02562 * 7 6 4 29 29 H 1.09002 * 109.47504 * 47.77779 * 12 2 1 30 30 H 1.09008 * 109.46913 * 167.77363 * 12 2 1 31 31 H 1.08999 * 109.50916 * 299.14461 * 15 13 12 32 32 H 1.09005 * 109.50037 * 59.25779 * 15 13 12 33 33 H 1.09002 * 109.52267 * 182.44315 * 16 15 13 34 34 H 1.09006 * 109.57075 * 62.28499 * 16 15 13 35 35 H 1.09004 * 109.50044 * 297.70723 * 17 16 15 36 36 H 1.08997 * 109.53328 * 177.61443 * 17 16 15 37 37 H 1.08997 * 109.46463 * 180.80703 * 18 17 16 38 38 H 1.08998 * 109.46505 * 60.83394 * 18 17 16 39 39 H 1.08995 * 115.55058 * 32.52663 * 20 19 13 40 40 H 1.09003 * 117.49789 * 359.97438 * 21 20 19 41 41 H 1.08998 * 117.50106 * 145.02543 * 21 20 19 42 42 H 1.08998 * 117.49924 * 214.97797 * 22 20 19 43 43 H 1.09001 * 117.50020 * 359.96918 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0747 1.5111 2.0488 6 6 2.0269 3.3494 1.5285 7 7 2.7112 4.0021 0.6146 8 14 1.5831 4.1867 3.1382 9 1 2.1152 5.5731 3.1382 10 1 0.1060 4.2229 3.2865 11 1 2.1759 3.4296 4.2699 12 6 1.9954 -0.7660 -1.1376 13 6 1.7672 -2.2595 -0.8962 14 1 0.7070 -2.4409 -0.7194 15 6 2.2214 -3.0500 -2.1254 16 6 2.0098 -4.5451 -1.8715 17 6 2.7857 -4.9566 -0.6172 18 6 2.3150 -4.1109 0.5682 19 7 2.5394 -2.6893 0.2765 20 6 2.2280 -1.8564 1.4459 21 6 3.3387 -0.9534 1.9859 22 6 2.9214 -2.2032 2.7650 23 1 -0.3633 0.5416 -0.8735 24 1 -0.3633 -1.0272 -0.0324 25 1 -0.3633 0.4855 0.9057 26 1 1.5611 1.9273 -0.8309 27 1 3.0798 1.3443 -0.1083 28 1 2.9414 3.5675 -0.2215 29 1 1.4809 -0.4625 -2.0493 30 1 3.0634 -0.5739 -1.2420 31 1 1.6373 -2.7419 -2.9926 32 1 3.2783 -2.8584 -2.3111 33 1 2.3722 -5.1148 -2.7273 34 1 0.9481 -4.7439 -1.7247 35 1 3.8514 -4.7951 -0.7792 36 1 2.6053 -6.0107 -0.4066 37 1 2.8756 -4.3915 1.4599 38 1 1.2523 -4.2834 0.7383 39 1 1.2055 -1.4825 1.4979 40 1 4.3006 -0.9776 1.4738 41 1 3.0469 0.0144 2.3937 42 1 2.3551 -2.0571 3.6848 43 1 3.6082 -3.0496 2.7652 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260484006.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:53 Heat of formation + Delta-G solvation = 34.332506 kcal Electronic energy + Delta-G solvation = -20257.837403 eV Core-core repulsion = 17531.711868 eV Total energy + Delta-G solvation = -2726.125535 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.46560 -36.31681 -35.69550 -32.93648 -31.40244 -31.01788 -26.88787 -26.59302 -24.32499 -23.52641 -21.88077 -21.20579 -20.27379 -20.08819 -19.36878 -16.67683 -15.99761 -15.28414 -15.01442 -14.37203 -14.21620 -13.95401 -13.70189 -13.57065 -13.23775 -13.02725 -12.48918 -12.11213 -11.72667 -11.63455 -11.42041 -11.30504 -10.93378 -10.85171 -10.74150 -10.66620 -10.65278 -10.45478 -10.18586 -10.10694 -9.95640 -9.56297 -9.42265 -8.59295 -8.33889 -7.75120 -7.11295 -6.32723 -4.01205 3.45428 3.47445 3.65650 4.14243 4.52423 4.59009 4.75915 4.90181 4.99493 5.15706 5.37714 5.43247 5.50173 5.54033 5.64491 5.75137 5.77651 5.80686 5.91855 5.92755 5.97474 6.01970 6.05941 6.10971 6.16105 6.22026 6.25989 6.29184 6.35484 6.51977 6.63252 6.71900 6.89791 7.05473 7.15356 7.18006 7.55960 7.73446 7.83978 8.02942 8.36889 8.61452 8.90925 9.69014 11.06111 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.031434 B = 0.006287 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.532187 B = 4452.645050 C = 4927.792356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.519 5.519 3 C 0.186 3.814 4 C -0.580 4.580 5 H 0.055 0.945 6 C 0.014 3.986 7 N -0.915 5.915 8 Si 1.068 2.932 9 H -0.284 1.284 10 H -0.290 1.290 11 H -0.287 1.287 12 C 0.059 3.941 13 C 0.097 3.903 14 H 0.036 0.964 15 C -0.112 4.112 16 C -0.118 4.118 17 C -0.116 4.116 18 C 0.057 3.943 19 N -0.504 5.504 20 C 0.056 3.944 21 C -0.130 4.130 22 C -0.214 4.214 23 H 0.011 0.989 24 H 0.041 0.959 25 H 0.073 0.927 26 H -0.026 1.026 27 H 0.021 0.979 28 H 0.266 0.734 29 H 0.024 0.976 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.025 0.975 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.698 -15.825 -2.257 16.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.242 5.242 3 C 0.061 3.939 4 C -0.619 4.619 5 H 0.073 0.927 6 C -0.189 4.189 7 N -0.552 5.552 8 Si 0.897 3.103 9 H -0.210 1.210 10 H -0.217 1.217 11 H -0.214 1.214 12 C -0.070 4.070 13 C -0.012 4.012 14 H 0.054 0.946 15 C -0.151 4.151 16 C -0.156 4.156 17 C -0.154 4.154 18 C -0.071 4.071 19 N -0.229 5.229 20 C -0.052 4.052 21 C -0.168 4.168 22 C -0.252 4.252 23 H 0.029 0.971 24 H 0.060 0.940 25 H 0.091 0.909 26 H -0.008 1.008 27 H 0.038 0.962 28 H 0.077 0.923 29 H 0.042 0.958 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.043 0.957 39 H 0.122 0.878 40 H 0.097 0.903 41 H 0.126 0.874 42 H 0.101 0.899 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.905 -14.550 -1.096 14.620 hybrid contribution -1.265 -1.143 -1.506 2.275 sum -2.170 -15.694 -2.602 16.055 Atomic orbital electron populations 1.22278 0.89574 0.98670 1.00991 1.62375 1.06017 1.16632 1.39186 1.19805 0.94669 0.82880 0.96576 1.21887 1.38489 0.99432 1.02049 0.92672 1.25767 0.94611 0.94783 1.03781 1.70789 1.36647 1.39935 1.07812 0.83542 0.75930 0.76183 0.74636 1.20957 1.21670 1.21379 1.22104 1.00632 0.92093 0.92171 1.21573 0.94733 0.94639 0.90245 0.94631 1.21607 1.02182 0.94402 0.96876 1.21554 0.99930 0.96305 0.97807 1.21591 1.00759 0.98227 0.94823 1.22023 0.98445 0.88790 0.97811 1.61668 1.56120 1.01269 1.03842 1.22191 0.97825 0.98357 0.86822 1.22872 0.98499 0.94470 1.00956 1.23245 1.05252 1.01131 0.95607 0.97081 0.93983 0.90856 1.00790 0.96151 0.92338 0.95791 0.90835 0.91976 0.91141 0.92195 0.92590 0.91315 0.92140 0.90977 0.95680 0.87780 0.90275 0.87360 0.89947 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 8.09 60.07 0.49 1.13 16 2 N -0.52 -10.65 1.13 -244.36 -0.28 -10.93 16 3 C 0.19 4.67 3.83 -4.98 -0.02 4.65 16 4 C -0.58 -15.73 7.69 -34.44 -0.26 -16.00 16 5 H 0.06 1.50 7.10 -52.49 -0.37 1.12 16 6 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 7 N -0.92 -27.64 13.65 55.43 0.76 -26.88 16 8 Si 1.07 25.09 29.90 -169.99 -5.08 20.01 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.06 1.07 4.42 -3.82 -0.02 1.05 16 13 C 0.10 1.49 2.04 -67.72 -0.14 1.35 16 14 H 0.04 0.57 6.54 -51.93 -0.34 0.23 16 15 C -0.11 -1.43 5.37 -26.65 -0.14 -1.57 16 16 C -0.12 -1.29 6.00 -26.61 -0.16 -1.45 16 17 C -0.12 -1.30 6.09 -26.65 -0.16 -1.46 16 18 C 0.06 0.76 5.32 -3.83 -0.02 0.74 16 19 N -0.50 -7.92 4.64 -218.76 -1.02 -8.93 16 20 C 0.06 0.98 3.35 -67.71 -0.23 0.75 16 21 C -0.13 -2.48 9.52 -26.70 -0.25 -2.74 16 22 C -0.21 -3.46 9.70 -26.69 -0.26 -3.72 16 23 H 0.01 0.21 8.13 -51.93 -0.42 -0.21 16 24 H 0.04 0.71 6.32 -51.93 -0.33 0.38 16 25 H 0.07 1.51 6.91 -51.93 -0.36 1.15 16 26 H -0.03 -0.70 7.98 -51.93 -0.41 -1.11 16 27 H 0.02 0.55 7.73 -51.93 -0.40 0.15 16 28 H 0.27 8.07 7.22 -40.82 -0.29 7.77 16 29 H 0.02 0.43 8.05 -51.93 -0.42 0.01 16 30 H 0.07 1.42 7.80 -51.92 -0.41 1.02 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.94 6.58 -51.93 -0.34 0.59 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.10 2.01 5.70 -51.93 -0.30 1.71 16 40 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 41 H 0.11 2.39 7.27 -51.93 -0.38 2.02 16 42 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 43 H 0.08 1.21 7.12 -51.93 -0.37 0.84 16 LS Contribution 321.25 15.07 4.84 4.84 Total: -1.00 -28.36 321.25 -9.79 -38.15 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.74 Total: 0.70 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -1.28 Total: -16.96 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: -0.54 Total: -46.74 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.08 Total: 20.01 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.36 -9.79 -38.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260484006.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.485 kcal (2) G-P(sol) polarization free energy of solvation -28.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds