Wall clock time and date at job start Mon Mar 30 2020 05:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46890 * 111.00222 * 2 1 4 4 C 1.50700 * 109.47078 * 66.04437 * 3 2 1 5 5 H 1.08000 * 119.99868 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00255 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99751 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00316 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47386 * 179.97438 * 8 6 4 10 10 H 1.48498 * 109.47092 * 299.99926 * 8 6 4 11 11 H 1.48505 * 109.47039 * 60.00193 * 8 6 4 12 12 C 1.46902 * 110.99637 * 236.04524 * 2 1 3 13 13 C 1.52998 * 109.47271 * 287.77011 * 12 2 1 14 14 H 1.09004 * 109.46242 * 55.90126 * 13 12 2 15 15 C 1.53040 * 109.46257 * 175.86007 * 13 12 2 16 16 C 1.53120 * 109.27997 * 179.19586 * 15 13 12 17 17 C 1.53123 * 109.16090 * 302.35226 * 16 15 13 18 18 C 1.53034 * 109.28014 * 57.65220 * 17 16 15 19 19 N 1.46842 * 109.46682 * 295.91665 * 13 12 2 20 20 C 1.46902 * 110.99659 * 54.14483 * 19 13 12 21 21 C 1.52999 * 117.49685 * 246.85784 * 20 19 13 22 22 C 1.53001 * 117.49797 * 178.20171 * 20 19 13 23 23 H 1.09007 * 109.46810 * 58.19868 * 1 2 3 24 24 H 1.09004 * 109.46704 * 178.19531 * 1 2 3 25 25 H 1.08995 * 109.47118 * 298.19604 * 1 2 3 26 26 H 1.09007 * 109.46954 * 306.04855 * 3 2 1 27 27 H 1.08995 * 109.47413 * 186.04830 * 3 2 1 28 28 H 0.97000 * 120.00226 * 0.02562 * 7 6 4 29 29 H 1.09002 * 109.47504 * 47.77779 * 12 2 1 30 30 H 1.09008 * 109.46913 * 167.77363 * 12 2 1 31 31 H 1.08999 * 109.50916 * 299.14461 * 15 13 12 32 32 H 1.09005 * 109.50037 * 59.25779 * 15 13 12 33 33 H 1.09002 * 109.52267 * 182.44315 * 16 15 13 34 34 H 1.09006 * 109.57075 * 62.28499 * 16 15 13 35 35 H 1.09004 * 109.50044 * 297.70723 * 17 16 15 36 36 H 1.08997 * 109.53328 * 177.61443 * 17 16 15 37 37 H 1.08997 * 109.46463 * 180.80703 * 18 17 16 38 38 H 1.08998 * 109.46505 * 60.83394 * 18 17 16 39 39 H 1.08995 * 115.55058 * 32.52663 * 20 19 13 40 40 H 1.09003 * 117.49789 * 359.97438 * 21 20 19 41 41 H 1.08998 * 117.50106 * 145.02543 * 21 20 19 42 42 H 1.08998 * 117.49924 * 214.97797 * 22 20 19 43 43 H 1.09001 * 117.50020 * 359.96918 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0747 1.5111 2.0488 6 6 2.0269 3.3494 1.5285 7 7 2.7112 4.0021 0.6146 8 14 1.5831 4.1867 3.1382 9 1 2.1152 5.5731 3.1382 10 1 0.1060 4.2229 3.2865 11 1 2.1759 3.4296 4.2699 12 6 1.9954 -0.7660 -1.1376 13 6 1.7672 -2.2595 -0.8962 14 1 0.7070 -2.4409 -0.7194 15 6 2.2214 -3.0500 -2.1254 16 6 2.0098 -4.5451 -1.8715 17 6 2.7857 -4.9566 -0.6172 18 6 2.3150 -4.1109 0.5682 19 7 2.5394 -2.6893 0.2765 20 6 2.2280 -1.8564 1.4459 21 6 3.3387 -0.9534 1.9859 22 6 2.9214 -2.2032 2.7650 23 1 -0.3633 0.5416 -0.8735 24 1 -0.3633 -1.0272 -0.0324 25 1 -0.3633 0.4855 0.9057 26 1 1.5611 1.9273 -0.8309 27 1 3.0798 1.3443 -0.1083 28 1 2.9414 3.5675 -0.2215 29 1 1.4809 -0.4625 -2.0493 30 1 3.0634 -0.5739 -1.2420 31 1 1.6373 -2.7419 -2.9926 32 1 3.2783 -2.8584 -2.3111 33 1 2.3722 -5.1148 -2.7273 34 1 0.9481 -4.7439 -1.7247 35 1 3.8514 -4.7951 -0.7792 36 1 2.6053 -6.0107 -0.4066 37 1 2.8756 -4.3915 1.4599 38 1 1.2523 -4.2834 0.7383 39 1 1.2055 -1.4825 1.4979 40 1 4.3006 -0.9776 1.4738 41 1 3.0469 0.0144 2.3937 42 1 2.3551 -2.0571 3.6848 43 1 3.6082 -3.0496 2.7652 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260484006.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:53 Heat of formation + Delta-G solvation = 18.886746 kcal Electronic energy + Delta-G solvation = -20258.507181 eV Core-core repulsion = 17531.711868 eV Total energy + Delta-G solvation = -2726.795313 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.75089 -37.93569 -37.00195 -34.96341 -32.68163 -32.21967 -28.85284 -28.05785 -25.87319 -24.92029 -23.42707 -22.69303 -21.79350 -21.34431 -20.54004 -18.79985 -17.31534 -16.70513 -16.58569 -15.73219 -15.68357 -15.47014 -15.32600 -14.75184 -14.65449 -14.21278 -14.11726 -13.63297 -13.24248 -13.12400 -13.04899 -12.84028 -12.55041 -12.45502 -12.33401 -12.14790 -11.94092 -11.87487 -11.65893 -11.40738 -11.23448 -10.93471 -10.87781 -10.57784 -10.52854 -9.02703 -8.86051 -8.60795 -6.30669 1.53612 1.61861 1.80285 2.57655 2.91120 3.12805 3.19875 3.29424 3.82231 4.00678 4.07517 4.19470 4.29531 4.33168 4.35481 4.40572 4.48104 4.57697 4.61009 4.63172 4.69015 4.80232 4.82520 4.90228 4.91887 4.97076 4.98385 5.03637 5.12248 5.16169 5.24205 5.27571 5.32904 5.37877 5.53881 5.58974 5.83138 6.03150 6.34796 6.41017 6.44667 6.47636 6.68724 7.48698 8.76926 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.031434 B = 0.006287 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.532187 B = 4452.645050 C = 4927.792356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.515 5.515 3 C 0.203 3.797 4 C -0.577 4.577 5 H 0.055 0.945 6 C -0.039 4.039 7 N -0.942 5.942 8 Si 1.116 2.884 9 H -0.288 1.288 10 H -0.270 1.270 11 H -0.271 1.271 12 C 0.060 3.940 13 C 0.104 3.896 14 H 0.037 0.963 15 C -0.109 4.109 16 C -0.114 4.114 17 C -0.112 4.112 18 C 0.056 3.944 19 N -0.512 5.512 20 C 0.061 3.939 21 C -0.152 4.152 22 C -0.183 4.183 23 H 0.006 0.994 24 H 0.073 0.927 25 H 0.057 0.943 26 H -0.054 1.054 27 H -0.006 1.006 28 H 0.251 0.749 29 H 0.028 0.972 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.028 0.972 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.646 -18.495 -1.692 18.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.238 5.238 3 C 0.077 3.923 4 C -0.615 4.615 5 H 0.073 0.927 6 C -0.236 4.236 7 N -0.581 5.581 8 Si 0.938 3.062 9 H -0.213 1.213 10 H -0.196 1.196 11 H -0.196 1.196 12 C -0.069 4.069 13 C -0.004 4.004 14 H 0.055 0.945 15 C -0.147 4.147 16 C -0.151 4.151 17 C -0.150 4.150 18 C -0.072 4.072 19 N -0.237 5.237 20 C -0.048 4.048 21 C -0.191 4.191 22 C -0.221 4.221 23 H 0.024 0.976 24 H 0.091 0.909 25 H 0.076 0.924 26 H -0.037 1.037 27 H 0.012 0.988 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.046 0.954 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.111 0.889 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.865 -17.266 -0.545 17.375 hybrid contribution -0.959 -0.370 -1.725 2.008 sum -2.824 -17.636 -2.270 18.004 Atomic orbital electron populations 1.22242 0.88386 1.00353 0.99938 1.62336 1.06968 1.13801 1.40694 1.19448 0.92908 0.85161 0.94805 1.22119 1.37452 0.99458 1.02458 0.92664 1.27253 0.93973 0.96092 1.06234 1.70925 1.38809 1.40317 1.08027 0.82936 0.76872 0.75076 0.71323 1.21342 1.19576 1.19590 1.22163 0.99288 0.94019 0.91392 1.21527 0.94839 0.92544 0.91527 0.94533 1.21601 1.01798 0.95650 0.95700 1.21544 1.00425 0.94651 0.98505 1.21589 1.00333 0.99142 0.93903 1.22136 0.98822 0.87026 0.99175 1.61658 1.56311 1.02662 1.03115 1.22021 0.96146 0.98115 0.88485 1.22577 0.98755 0.94224 1.03499 1.23259 1.04256 0.99377 0.95181 0.97567 0.90880 0.92383 1.03666 0.98837 0.93974 0.95407 0.92768 0.90910 0.91881 0.90180 0.91943 0.91867 0.89680 0.90501 0.95401 0.89501 0.91523 0.91017 0.88913 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.50 8.09 127.69 1.03 2.53 16 2 N -0.52 -21.66 1.13 -927.03 -1.05 -22.71 16 3 C 0.20 10.72 3.83 85.56 0.33 11.05 16 4 C -0.58 -32.24 7.69 25.60 0.20 -32.04 16 5 H 0.06 3.05 7.10 -2.91 -0.02 3.03 16 6 C -0.04 -2.23 5.46 84.65 0.46 -1.77 16 7 N -0.94 -58.92 13.65 21.45 0.29 -58.63 16 8 Si 1.12 50.78 29.90 68.60 2.05 52.84 16 9 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 10 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 11 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 12 C 0.06 2.19 4.42 86.30 0.38 2.57 16 13 C 0.10 3.05 2.04 44.94 0.09 3.14 16 14 H 0.04 1.08 6.54 -2.39 -0.02 1.06 16 15 C -0.11 -2.52 5.37 30.65 0.16 -2.36 16 16 C -0.11 -2.06 6.00 30.68 0.18 -1.87 16 17 C -0.11 -2.09 6.09 30.65 0.19 -1.90 16 18 C 0.06 1.30 5.32 86.32 0.46 1.76 16 19 N -0.51 -15.31 4.64 -846.04 -3.93 -19.24 16 20 C 0.06 2.09 3.35 44.92 0.15 2.24 16 21 C -0.15 -5.94 9.52 30.62 0.29 -5.65 16 22 C -0.18 -5.61 9.70 30.62 0.30 -5.31 16 23 H 0.01 0.23 8.13 -2.38 -0.02 0.21 16 24 H 0.07 2.35 6.32 -2.38 -0.02 2.33 16 25 H 0.06 2.39 6.91 -2.39 -0.02 2.38 16 26 H -0.05 -3.12 7.98 -2.38 -0.02 -3.14 16 27 H -0.01 -0.37 7.73 -2.39 -0.02 -0.39 16 28 H 0.25 16.03 7.22 -92.71 -0.67 15.36 16 29 H 0.03 0.99 8.05 -2.39 -0.02 0.97 16 30 H 0.05 2.18 7.80 -2.38 -0.02 2.16 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.06 1.27 8.14 -2.38 -0.02 1.26 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 1.73 6.58 -2.39 -0.02 1.72 16 38 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.09 3.29 5.70 -2.39 -0.01 3.28 16 40 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 41 H 0.07 3.31 7.27 -2.39 -0.02 3.30 16 42 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 43 H 0.10 2.70 7.12 -2.39 -0.02 2.69 16 Total: -1.00 -63.32 321.25 2.65 -60.68 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 1.05 Total: 14.65 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 4.23 Total: -27.60 kcal Atomic # 7 Polarization: -95.88 SS G_CDS: -4.68 Total: -100.57 kcal Atomic # 14 Polarization: 50.78 SS G_CDS: 2.05 Total: 52.84 kcal Total: -63.32 2.65 -60.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260484006.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.565 kcal (2) G-P(sol) polarization free energy of solvation -63.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds