Wall clock time and date at job start Mon Mar 30 2020 05:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46900 * 110.99967 * 2 1 4 4 C 1.50699 * 109.47391 * 293.95919 * 3 2 1 5 5 H 1.07995 * 119.99983 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99613 * 180.02562 * 4 3 2 7 7 N 1.31523 * 119.99470 * 179.97438 * 6 4 3 8 8 Si 1.86795 * 120.00513 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.47043 * 89.99989 * 8 6 4 10 10 H 1.48498 * 109.47501 * 210.00256 * 8 6 4 11 11 H 1.48505 * 109.47148 * 330.00184 * 8 6 4 12 12 C 1.46894 * 110.99918 * 123.96004 * 2 1 3 13 13 C 1.52995 * 109.47345 * 75.50559 * 12 2 1 14 14 H 1.09001 * 109.46309 * 303.50326 * 13 12 2 15 15 C 1.53037 * 109.46109 * 183.53589 * 13 12 2 16 16 C 1.53127 * 109.27802 * 180.80407 * 15 13 12 17 17 C 1.53121 * 109.15944 * 57.65527 * 16 15 13 18 18 C 1.53041 * 109.27983 * 302.34650 * 17 16 15 19 19 N 1.46847 * 109.46337 * 63.48473 * 13 12 2 20 20 C 1.46898 * 110.99941 * 305.85533 * 19 13 12 21 21 C 1.53002 * 117.52032 * 111.77335 * 20 19 13 22 22 C 1.53001 * 60.00003 * 107.48685 * 21 20 19 23 23 H 1.09000 * 109.46638 * 291.44746 * 1 2 3 24 24 H 1.09005 * 109.47284 * 51.44584 * 1 2 3 25 25 H 1.08993 * 109.47046 * 171.44448 * 1 2 3 26 26 H 1.09006 * 109.46587 * 53.95657 * 3 2 1 27 27 H 1.08997 * 109.47410 * 173.95250 * 3 2 1 28 28 H 0.96999 * 119.99411 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47097 * 315.49955 * 12 2 1 30 30 H 1.09004 * 109.46829 * 195.50335 * 12 2 1 31 31 H 1.08994 * 109.50426 * 300.74204 * 15 13 12 32 32 H 1.08999 * 109.50381 * 60.86640 * 15 13 12 33 33 H 1.08991 * 109.52352 * 177.55887 * 16 15 13 34 34 H 1.08998 * 109.51955 * 297.75360 * 16 15 13 35 35 H 1.09001 * 109.50322 * 62.28412 * 17 16 15 36 36 H 1.08999 * 109.50526 * 182.37031 * 17 16 15 37 37 H 1.08997 * 109.46263 * 299.16790 * 18 17 16 38 38 H 1.08996 * 109.46938 * 179.19438 * 18 17 16 39 39 H 1.09004 * 115.55083 * 326.07697 * 20 19 13 40 40 H 1.08997 * 117.50103 * 214.96960 * 21 20 19 41 41 H 1.08994 * 117.49920 * 359.97438 * 21 20 19 42 42 H 1.08998 * 117.49368 * 252.51509 * 22 21 20 43 43 H 1.08997 * 117.50238 * 107.49143 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0746 1.5114 -2.0487 6 6 2.0277 3.3493 -1.5287 7 7 1.7151 3.9389 -2.6620 8 14 3.0010 4.2759 -0.2312 9 1 4.4533 4.0624 -0.4556 10 1 2.6937 5.7258 -0.3234 11 1 2.6296 3.7760 1.1170 12 6 1.9955 -0.7661 1.1375 13 6 1.8412 -2.2626 0.8596 14 1 0.7941 -2.4885 0.6577 15 6 2.3081 -3.0587 2.0804 16 6 2.1708 -4.5559 1.7904 17 6 2.9887 -4.9033 0.5433 18 6 2.5021 -4.0538 -0.6329 19 7 2.6547 -2.6302 -0.3064 20 6 2.3275 -1.7867 -1.4636 21 6 3.3933 -0.7988 -1.9423 22 6 3.0847 -2.0502 -2.7668 23 1 -0.3632 0.3758 0.9565 24 1 -0.3634 0.6405 -0.8037 25 1 -0.3633 -1.0162 -0.1529 26 1 1.5611 1.9273 0.8310 27 1 3.0797 1.3445 0.1083 28 1 1.9898 4.8550 -2.8239 29 1 1.4414 -0.5049 2.0390 30 1 3.0502 -0.5294 1.2779 31 1 3.3512 -2.8231 2.2913 32 1 1.6939 -2.7971 2.9420 33 1 2.5428 -5.1273 2.6407 34 1 1.1223 -4.7988 1.6176 35 1 4.0425 -4.6967 0.7301 36 1 2.8612 -5.9598 0.3072 37 1 1.4519 -4.2710 -0.8279 38 1 3.0919 -4.2884 -1.5190 39 1 1.2847 -1.4786 -1.5410 40 1 3.0518 0.1591 -2.3346 41 1 4.3374 -0.7744 -1.3983 42 1 3.8260 -2.8493 -2.7652 43 1 2.5401 -1.9156 -3.7013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260484010.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:56 Heat of formation + Delta-G solvation = 41.657481 kcal Electronic energy + Delta-G solvation = -20284.487920 eV Core-core repulsion = 17558.680020 eV Total energy + Delta-G solvation = -2725.807900 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.42980 -36.32153 -35.62593 -32.65337 -31.44707 -31.04356 -27.90616 -26.56340 -24.38045 -23.48448 -21.71382 -20.99275 -20.12580 -19.95148 -19.33030 -16.79834 -15.94831 -15.25501 -14.90694 -14.41814 -14.15881 -14.11645 -13.84873 -13.54017 -13.13134 -12.98976 -12.33945 -12.33079 -11.91947 -11.68502 -11.60257 -11.27330 -10.97709 -10.81369 -10.72368 -10.63048 -10.57893 -10.47513 -10.17924 -10.05998 -9.75152 -9.46767 -9.42016 -9.12975 -8.54463 -7.72597 -7.13244 -6.03957 -4.00091 3.29913 3.37451 3.39826 4.17780 4.43753 4.64149 4.72747 4.91899 5.01572 5.15514 5.29255 5.39972 5.52050 5.57040 5.67418 5.79360 5.84236 5.84785 5.93010 5.95551 6.00147 6.02990 6.10638 6.14358 6.17139 6.24234 6.29224 6.31831 6.37330 6.53600 6.68541 6.76177 6.91620 6.95817 7.05076 7.32417 7.58566 7.63439 7.79470 7.94010 8.09903 8.68076 9.04067 9.58867 11.08830 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.029354 B = 0.006621 C = 0.006044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.630728 B = 4227.756525 C = 4631.415283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.517 5.517 3 C 0.164 3.836 4 C -0.501 4.501 5 H 0.081 0.919 6 C 0.069 3.931 7 N -0.901 5.901 8 Si 0.872 3.128 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.269 1.269 12 C 0.058 3.942 13 C 0.098 3.902 14 H 0.036 0.964 15 C -0.112 4.112 16 C -0.118 4.118 17 C -0.116 4.116 18 C 0.057 3.943 19 N -0.504 5.504 20 C 0.057 3.943 21 C -0.132 4.132 22 C -0.214 4.214 23 H 0.010 0.990 24 H 0.081 0.919 25 H 0.043 0.957 26 H -0.017 1.017 27 H 0.025 0.975 28 H 0.262 0.738 29 H 0.026 0.974 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.025 0.975 38 H 0.072 0.928 39 H 0.103 0.897 40 H 0.115 0.885 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.027 -15.176 7.111 16.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.240 5.240 3 C 0.037 3.963 4 C -0.539 4.539 5 H 0.099 0.901 6 C -0.132 4.132 7 N -0.540 5.540 8 Si 0.700 3.300 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.194 1.194 12 C -0.071 4.071 13 C -0.011 4.011 14 H 0.054 0.946 15 C -0.151 4.151 16 C -0.156 4.156 17 C -0.154 4.154 18 C -0.071 4.071 19 N -0.230 5.230 20 C -0.052 4.052 21 C -0.169 4.169 22 C -0.252 4.252 23 H 0.028 0.972 24 H 0.099 0.901 25 H 0.062 0.938 26 H 0.001 0.999 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.043 0.957 38 H 0.090 0.910 39 H 0.121 0.879 40 H 0.134 0.866 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.686 -15.131 6.707 16.636 hybrid contribution -0.544 0.896 1.205 1.597 sum 1.141 -14.235 7.912 16.325 Atomic orbital electron populations 1.22335 0.89101 0.99968 1.00428 1.62273 1.06373 1.15975 1.39356 1.20174 0.94929 0.84188 0.96981 1.20971 1.35277 0.96951 1.00741 0.90140 1.24879 0.95835 0.97415 0.95118 1.69896 1.46997 1.13257 1.23826 0.86914 0.81013 0.79244 0.82875 1.20171 1.21428 1.19426 1.22143 1.00525 0.92396 0.92037 1.21540 0.94468 0.94737 0.90379 0.94616 1.21608 1.02109 0.94425 0.96933 1.21552 0.99879 0.96355 0.97810 1.21591 1.00502 0.98344 0.94954 1.22016 0.98718 0.88671 0.97659 1.61676 1.54923 1.01880 1.04471 1.22144 0.97202 0.98379 0.87427 1.22961 0.98994 0.94404 1.00588 1.23219 1.04602 1.02026 0.95319 0.97186 0.90064 0.93837 0.99931 0.95745 0.92765 0.95549 0.90865 0.91189 0.92012 0.92253 0.92572 0.91355 0.92178 0.95656 0.90979 0.87935 0.86649 0.90468 0.90273 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 8.44 60.07 0.51 1.07 16 2 N -0.52 -10.17 0.99 -244.37 -0.24 -10.41 16 3 C 0.16 3.81 3.13 -4.98 -0.02 3.80 16 4 C -0.50 -13.46 7.59 -34.44 -0.26 -13.72 16 5 H 0.08 2.35 7.41 -52.49 -0.39 1.96 16 6 C 0.07 1.94 5.47 -17.81 -0.10 1.84 16 7 N -0.90 -26.96 13.96 55.43 0.77 -26.19 16 8 Si 0.87 21.34 27.47 -169.99 -4.67 16.67 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 12 C 0.06 0.99 4.45 -3.83 -0.02 0.97 16 13 C 0.10 1.45 2.08 -67.72 -0.14 1.31 16 14 H 0.04 0.56 6.90 -51.93 -0.36 0.20 16 15 C -0.11 -1.38 5.37 -26.65 -0.14 -1.52 16 16 C -0.12 -1.26 6.00 -26.60 -0.16 -1.42 16 17 C -0.12 -1.28 6.09 -26.65 -0.16 -1.44 16 18 C 0.06 0.75 5.34 -3.83 -0.02 0.73 16 19 N -0.50 -7.79 4.64 -218.76 -1.02 -8.80 16 20 C 0.06 0.98 3.31 -67.71 -0.22 0.76 16 21 C -0.13 -2.52 9.09 -26.73 -0.24 -2.76 16 22 C -0.21 -3.53 9.70 -26.73 -0.26 -3.79 16 23 H 0.01 0.18 7.99 -51.93 -0.41 -0.24 16 24 H 0.08 1.69 6.67 -51.93 -0.35 1.34 16 25 H 0.04 0.72 6.68 -51.93 -0.35 0.37 16 26 H -0.02 -0.41 7.18 -51.93 -0.37 -0.79 16 27 H 0.02 0.58 7.26 -51.93 -0.38 0.21 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.03 0.44 7.90 -51.93 -0.41 0.03 16 30 H 0.07 1.32 7.74 -51.93 -0.40 0.91 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.94 6.66 -51.93 -0.35 0.59 16 39 H 0.10 1.98 5.88 -51.93 -0.31 1.67 16 40 H 0.12 2.60 6.62 -51.93 -0.34 2.26 16 41 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 42 H 0.08 1.21 7.21 -51.93 -0.37 0.83 16 43 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 317.54 15.07 4.79 4.79 Total: -1.00 -27.85 317.54 -9.36 -37.21 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -7.76 Total: 0.91 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -1.24 Total: -14.17 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: -0.48 Total: -45.40 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.85 -9.36 -37.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260484010.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.868 kcal (2) G-P(sol) polarization free energy of solvation -27.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds