Wall clock time and date at job start Mon Mar 30 2020 05:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46900 * 110.99967 * 2 1 4 4 C 1.50699 * 109.47391 * 293.95919 * 3 2 1 5 5 H 1.07995 * 119.99983 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99613 * 180.02562 * 4 3 2 7 7 N 1.31523 * 119.99470 * 179.97438 * 6 4 3 8 8 Si 1.86795 * 120.00513 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.47043 * 89.99989 * 8 6 4 10 10 H 1.48498 * 109.47501 * 210.00256 * 8 6 4 11 11 H 1.48505 * 109.47148 * 330.00184 * 8 6 4 12 12 C 1.46894 * 110.99918 * 123.96004 * 2 1 3 13 13 C 1.52995 * 109.47345 * 75.50559 * 12 2 1 14 14 H 1.09001 * 109.46309 * 303.50326 * 13 12 2 15 15 C 1.53037 * 109.46109 * 183.53589 * 13 12 2 16 16 C 1.53127 * 109.27802 * 180.80407 * 15 13 12 17 17 C 1.53121 * 109.15944 * 57.65527 * 16 15 13 18 18 C 1.53041 * 109.27983 * 302.34650 * 17 16 15 19 19 N 1.46847 * 109.46337 * 63.48473 * 13 12 2 20 20 C 1.46898 * 110.99941 * 305.85533 * 19 13 12 21 21 C 1.53002 * 117.52032 * 111.77335 * 20 19 13 22 22 C 1.53001 * 60.00003 * 107.48685 * 21 20 19 23 23 H 1.09000 * 109.46638 * 291.44746 * 1 2 3 24 24 H 1.09005 * 109.47284 * 51.44584 * 1 2 3 25 25 H 1.08993 * 109.47046 * 171.44448 * 1 2 3 26 26 H 1.09006 * 109.46587 * 53.95657 * 3 2 1 27 27 H 1.08997 * 109.47410 * 173.95250 * 3 2 1 28 28 H 0.96999 * 119.99411 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47097 * 315.49955 * 12 2 1 30 30 H 1.09004 * 109.46829 * 195.50335 * 12 2 1 31 31 H 1.08994 * 109.50426 * 300.74204 * 15 13 12 32 32 H 1.08999 * 109.50381 * 60.86640 * 15 13 12 33 33 H 1.08991 * 109.52352 * 177.55887 * 16 15 13 34 34 H 1.08998 * 109.51955 * 297.75360 * 16 15 13 35 35 H 1.09001 * 109.50322 * 62.28412 * 17 16 15 36 36 H 1.08999 * 109.50526 * 182.37031 * 17 16 15 37 37 H 1.08997 * 109.46263 * 299.16790 * 18 17 16 38 38 H 1.08996 * 109.46938 * 179.19438 * 18 17 16 39 39 H 1.09004 * 115.55083 * 326.07697 * 20 19 13 40 40 H 1.08997 * 117.50103 * 214.96960 * 21 20 19 41 41 H 1.08994 * 117.49920 * 359.97438 * 21 20 19 42 42 H 1.08998 * 117.49368 * 252.51509 * 22 21 20 43 43 H 1.08997 * 117.50238 * 107.49143 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0746 1.5114 -2.0487 6 6 2.0277 3.3493 -1.5287 7 7 1.7151 3.9389 -2.6620 8 14 3.0010 4.2759 -0.2312 9 1 4.4533 4.0624 -0.4556 10 1 2.6937 5.7258 -0.3234 11 1 2.6296 3.7760 1.1170 12 6 1.9955 -0.7661 1.1375 13 6 1.8412 -2.2626 0.8596 14 1 0.7941 -2.4885 0.6577 15 6 2.3081 -3.0587 2.0804 16 6 2.1708 -4.5559 1.7904 17 6 2.9887 -4.9033 0.5433 18 6 2.5021 -4.0538 -0.6329 19 7 2.6547 -2.6302 -0.3064 20 6 2.3275 -1.7867 -1.4636 21 6 3.3933 -0.7988 -1.9423 22 6 3.0847 -2.0502 -2.7668 23 1 -0.3632 0.3758 0.9565 24 1 -0.3634 0.6405 -0.8037 25 1 -0.3633 -1.0162 -0.1529 26 1 1.5611 1.9273 0.8310 27 1 3.0797 1.3445 0.1083 28 1 1.9898 4.8550 -2.8239 29 1 1.4414 -0.5049 2.0390 30 1 3.0502 -0.5294 1.2779 31 1 3.3512 -2.8231 2.2913 32 1 1.6939 -2.7971 2.9420 33 1 2.5428 -5.1273 2.6407 34 1 1.1223 -4.7988 1.6176 35 1 4.0425 -4.6967 0.7301 36 1 2.8612 -5.9598 0.3072 37 1 1.4519 -4.2710 -0.8279 38 1 3.0919 -4.2884 -1.5190 39 1 1.2847 -1.4786 -1.5410 40 1 3.0518 0.1591 -2.3346 41 1 4.3374 -0.7744 -1.3983 42 1 3.8260 -2.8493 -2.7652 43 1 2.5401 -1.9156 -3.7013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260484010.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:56 Heat of formation + Delta-G solvation = 26.139284 kcal Electronic energy + Delta-G solvation = -20285.160840 eV Core-core repulsion = 17558.680020 eV Total energy + Delta-G solvation = -2726.480820 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.67304 -37.82993 -36.94132 -34.66376 -32.74663 -32.19481 -29.79651 -27.95363 -25.81786 -24.76601 -23.19522 -22.43550 -21.60350 -21.29398 -20.46802 -18.90135 -17.23807 -16.59461 -16.50647 -16.16741 -15.52447 -15.37470 -15.21252 -14.74590 -14.58624 -14.29663 -14.12790 -13.63510 -13.41313 -13.17775 -12.92710 -12.80090 -12.43795 -12.38387 -12.26940 -12.08222 -11.88132 -11.82318 -11.60451 -11.49764 -11.24900 -11.09672 -10.84687 -10.73798 -10.67067 -8.99212 -8.72878 -8.23123 -6.22902 1.34911 1.35785 1.45188 2.36538 2.96818 3.10770 3.19687 3.34348 3.90148 4.06253 4.13226 4.27121 4.37961 4.40403 4.43617 4.46820 4.54640 4.63418 4.68180 4.70600 4.75782 4.84922 4.87924 4.95983 4.98367 5.02320 5.07686 5.09230 5.16749 5.23194 5.29649 5.32962 5.37762 5.43659 5.59048 5.59316 5.70313 6.04822 6.37388 6.44596 6.48964 6.71307 6.82314 7.39368 8.92981 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.029354 B = 0.006621 C = 0.006044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.630728 B = 4227.756525 C = 4631.415283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.522 5.522 3 C 0.177 3.823 4 C -0.490 4.490 5 H 0.043 0.957 6 C 0.010 3.990 7 N -0.948 5.948 8 Si 0.936 3.064 9 H -0.269 1.269 10 H -0.286 1.286 11 H -0.256 1.256 12 C 0.059 3.941 13 C 0.102 3.898 14 H 0.032 0.968 15 C -0.108 4.108 16 C -0.115 4.115 17 C -0.111 4.111 18 C 0.055 3.945 19 N -0.509 5.509 20 C 0.067 3.933 21 C -0.148 4.148 22 C -0.191 4.191 23 H 0.019 0.981 24 H 0.050 0.950 25 H 0.066 0.934 26 H -0.023 1.023 27 H 0.022 0.978 28 H 0.263 0.737 29 H 0.038 0.962 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.024 0.976 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.650 -17.436 9.303 19.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.245 5.245 3 C 0.050 3.950 4 C -0.529 4.529 5 H 0.061 0.939 6 C -0.186 4.186 7 N -0.589 5.589 8 Si 0.761 3.239 9 H -0.194 1.194 10 H -0.212 1.212 11 H -0.180 1.180 12 C -0.070 4.070 13 C -0.007 4.007 14 H 0.050 0.950 15 C -0.146 4.146 16 C -0.152 4.152 17 C -0.149 4.149 18 C -0.072 4.072 19 N -0.234 5.234 20 C -0.041 4.041 21 C -0.187 4.187 22 C -0.229 4.229 23 H 0.037 0.963 24 H 0.069 0.931 25 H 0.085 0.915 26 H -0.005 1.005 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.042 0.958 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.118 0.882 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.303 -17.423 8.918 19.708 hybrid contribution -0.791 1.521 0.464 1.775 sum 1.513 -15.902 9.381 18.525 Atomic orbital electron populations 1.22235 0.88433 1.00740 0.99644 1.62200 1.06988 1.13995 1.41323 1.19882 0.94656 0.85964 0.94478 1.21101 1.33727 0.96780 1.01286 0.93881 1.25696 0.97191 0.98575 0.97187 1.70042 1.49014 1.13757 1.26100 0.85879 0.79629 0.77773 0.80612 1.19449 1.21162 1.17987 1.22218 0.99865 0.93582 0.91319 1.21551 0.94366 0.93387 0.91420 0.94969 1.21593 1.02013 0.95228 0.95775 1.21548 1.00172 0.95148 0.98367 1.21578 1.00198 0.99048 0.94055 1.22123 0.98870 0.87222 0.99013 1.61689 1.55006 1.03019 1.03679 1.21915 0.95457 0.97885 0.88880 1.22640 0.99556 0.93668 1.02795 1.23224 1.04225 1.00546 0.94910 0.96290 0.93106 0.91536 1.00488 0.96023 0.92754 0.94388 0.91761 0.91516 0.90677 0.90197 0.92223 0.91670 0.90002 0.95758 0.90787 0.90077 0.90865 0.90769 0.88188 0.89837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.41 8.44 127.69 1.08 2.49 16 2 N -0.52 -20.61 0.99 -927.06 -0.92 -21.53 16 3 C 0.18 8.35 3.13 85.56 0.27 8.62 16 4 C -0.49 -27.41 7.59 25.60 0.19 -27.21 16 5 H 0.04 2.68 7.41 -2.91 -0.02 2.66 16 6 C 0.01 0.60 5.47 84.65 0.46 1.07 16 7 N -0.95 -58.85 13.96 21.45 0.30 -58.56 16 8 Si 0.94 44.50 27.47 68.60 1.88 46.39 16 9 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 11 H -0.26 -11.50 6.54 99.48 0.65 -10.85 16 12 C 0.06 1.92 4.45 86.30 0.38 2.30 16 13 C 0.10 2.80 2.08 44.94 0.09 2.89 16 14 H 0.03 0.93 6.90 -2.39 -0.02 0.91 16 15 C -0.11 -2.28 5.37 30.65 0.16 -2.11 16 16 C -0.11 -1.98 6.00 30.68 0.18 -1.80 16 17 C -0.11 -2.03 6.09 30.65 0.19 -1.84 16 18 C 0.06 1.30 5.34 86.33 0.46 1.76 16 19 N -0.51 -14.81 4.64 -846.02 -3.93 -18.73 16 20 C 0.07 2.33 3.31 44.92 0.15 2.47 16 21 C -0.15 -5.82 9.09 30.60 0.28 -5.55 16 22 C -0.19 -6.20 9.70 30.59 0.30 -5.90 16 23 H 0.02 0.66 7.99 -2.39 -0.02 0.64 16 24 H 0.05 2.19 6.67 -2.38 -0.02 2.17 16 25 H 0.07 2.16 6.68 -2.39 -0.02 2.14 16 26 H -0.02 -1.08 7.18 -2.38 -0.02 -1.10 16 27 H 0.02 1.04 7.26 -2.39 -0.02 1.02 16 28 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 29 H 0.04 1.16 7.90 -2.39 -0.02 1.15 16 30 H 0.06 2.23 7.74 -2.39 -0.02 2.21 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.07 1.71 6.66 -2.39 -0.02 1.70 16 39 H 0.08 3.17 5.88 -2.39 -0.01 3.16 16 40 H 0.07 3.51 6.62 -2.39 -0.02 3.49 16 41 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 42 H 0.10 2.84 7.21 -2.39 -0.02 2.82 16 43 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -61.88 317.54 2.43 -59.45 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.90 Total: 15.80 kcal Atomic # 6 Polarization: -27.02 SS G_CDS: 4.20 Total: -22.82 kcal Atomic # 7 Polarization: -94.27 SS G_CDS: -4.55 Total: -98.82 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.39 kcal Total: -61.88 2.43 -59.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260484010.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.586 kcal (2) G-P(sol) polarization free energy of solvation -61.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds