Wall clock time and date at job start Mon Mar 30 2020 03:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.48560 * 111.00280 * 2 1 4 4 C 1.54381 * 104.59602 * 200.95791 * 3 2 1 5 5 C 1.54255 * 105.06053 * 23.85356 * 4 3 2 6 6 C 1.50699 * 110.32591 * 118.89410 * 5 4 3 7 7 H 1.08006 * 119.99994 * 3.43766 * 6 5 4 8 8 C 1.37881 * 120.00125 * 183.44297 * 6 5 4 9 9 N 1.31510 * 120.00002 * 351.99001 * 8 6 5 10 10 Si 1.86800 * 119.99886 * 171.99574 * 8 6 5 11 11 H 1.48503 * 109.46830 * 179.97438 * 10 8 6 12 12 H 1.48507 * 109.47180 * 59.99802 * 10 8 6 13 13 H 1.48499 * 109.47216 * 299.99613 * 10 8 6 14 14 N 1.46895 * 110.32346 * 241.00255 * 5 4 3 15 15 C 1.46905 * 110.99860 * 295.08513 * 14 5 4 16 16 C 1.53000 * 109.47216 * 255.64389 * 15 14 5 17 17 C 1.52999 * 109.46720 * 180.02562 * 16 15 14 18 18 C 1.53002 * 109.47509 * 60.00108 * 17 16 15 19 19 C 1.52997 * 109.46895 * 300.00219 * 18 17 16 20 20 C 1.52999 * 109.47749 * 59.99653 * 19 18 17 21 21 C 1.48724 * 111.01505 * 244.48940 * 2 1 3 22 22 H 1.09003 * 109.47220 * 60.12787 * 1 2 3 23 23 H 1.08998 * 109.47425 * 180.12671 * 1 2 3 24 24 H 1.09004 * 109.47356 * 300.13095 * 1 2 3 25 25 H 1.08995 * 110.41320 * 82.18057 * 3 2 1 26 26 H 1.08999 * 110.51209 * 319.78782 * 3 2 1 27 27 H 1.09001 * 110.32478 * 264.95572 * 4 3 2 28 28 H 1.09001 * 110.32098 * 142.74849 * 4 3 2 29 29 H 0.97006 * 119.99710 * 4.41756 * 9 8 6 30 30 H 1.00898 * 111.00223 * 59.04390 * 14 5 4 31 31 H 1.08997 * 109.46915 * 15.64746 * 15 14 5 32 32 H 1.08997 * 109.47470 * 300.00017 * 16 15 14 33 33 H 1.08996 * 109.47039 * 60.00436 * 16 15 14 34 34 H 1.09001 * 109.47198 * 299.99679 * 17 16 15 35 35 H 1.09008 * 109.47131 * 180.02562 * 17 16 15 36 36 H 1.08999 * 109.47681 * 179.97438 * 18 17 16 37 37 H 1.09007 * 109.46394 * 59.99620 * 18 17 16 38 38 H 1.08997 * 109.47115 * 299.99518 * 19 18 17 39 39 H 1.09000 * 109.46986 * 180.02562 * 19 18 17 40 40 H 1.08991 * 109.47425 * 179.97438 * 20 19 18 41 41 H 1.08997 * 109.46922 * 59.99747 * 20 19 18 42 42 H 1.09000 * 110.39072 * 40.24591 * 21 2 1 43 43 H 1.08997 * 110.51073 * 277.74745 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4433 -0.0539 -1.3584 6 6 3.7895 0.2355 -2.7963 7 1 4.0474 1.2400 -3.0980 8 6 3.7769 -0.7820 -3.7267 9 7 3.6186 -2.0279 -3.3365 10 14 3.9849 -0.3908 -5.5414 11 1 3.9359 -1.6495 -6.3279 12 1 5.2940 0.2765 -5.7571 13 1 2.8909 0.5115 -5.9819 14 7 4.3951 -1.0172 -0.7893 15 6 5.7737 -0.5209 -0.8962 16 6 6.4962 -1.2610 -2.0236 17 6 7.9321 -0.7445 -2.1345 18 6 8.6649 -0.9872 -0.8134 19 6 7.9423 -0.2471 0.3140 20 6 6.5064 -0.7636 0.4249 21 6 2.0023 -0.5979 -1.2530 22 1 -0.3634 0.5119 -0.8911 23 1 -0.3634 -1.0276 0.0023 24 1 -0.3634 0.5159 0.8888 25 1 2.0079 1.7916 1.0120 26 1 1.4105 2.0229 -0.6591 27 1 4.1483 1.1747 0.2935 28 1 3.6937 2.0995 -1.1699 29 1 3.4466 -2.2255 -2.4025 30 1 4.1619 -1.2334 0.1683 31 1 5.7595 0.5472 -1.1133 32 1 6.5104 -2.3290 -1.8065 33 1 5.9740 -1.0884 -2.9646 34 1 7.9183 0.3236 -2.3514 35 1 8.4468 -1.2714 -2.9380 36 1 9.6880 -0.6196 -0.8925 37 1 8.6786 -2.0554 -0.5966 38 1 7.9285 0.8210 0.0971 39 1 8.4646 -0.4196 1.2550 40 1 5.9918 -0.2367 1.2283 41 1 6.5202 -1.8317 0.6418 42 1 1.4105 -0.2753 -2.1096 43 1 2.0108 -1.6856 -1.1836 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260564166.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:06 Heat of formation + Delta-G solvation = -8.744854 kcal Electronic energy + Delta-G solvation = -20605.554482 eV Core-core repulsion = 17877.560973 eV Total energy + Delta-G solvation = -2727.993509 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.92946 -37.42332 -34.26050 -31.93594 -30.34486 -29.99238 -28.21773 -26.24231 -25.37920 -23.29358 -21.87674 -21.12098 -20.37377 -19.10553 -18.89870 -16.66389 -15.27368 -15.02281 -14.51901 -13.89872 -13.77488 -13.67890 -13.63268 -13.38051 -13.08720 -12.47213 -12.23973 -11.92993 -11.65923 -11.55086 -11.40409 -10.92097 -10.75514 -10.72396 -10.57167 -10.47633 -10.39518 -10.33456 -10.07682 -9.89514 -9.80951 -9.37891 -9.26293 -8.50072 -8.12408 -7.81928 -7.05926 -6.05498 -3.92195 3.46608 3.47879 3.66128 4.57720 4.80951 5.09852 5.27890 5.32042 5.45422 5.53139 5.63811 5.69988 5.81912 5.86605 5.95510 5.99528 6.07800 6.08051 6.10736 6.20030 6.20763 6.26130 6.36628 6.45015 6.45709 6.53963 6.66840 6.72218 6.77526 6.79642 6.83695 6.92914 7.03740 7.27741 7.36579 7.46536 7.69350 7.72242 8.09009 8.44753 8.69018 8.89858 9.17285 9.87851 11.28801 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015950 B = 0.010682 C = 0.007178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.021638 B = 2620.499399 C = 3899.944418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.526 5.526 3 C 0.037 3.963 4 C -0.142 4.142 5 C 0.235 3.765 6 C -0.601 4.601 7 H 0.043 0.957 8 C 0.044 3.956 9 N -0.887 5.887 10 Si 1.048 2.952 11 H -0.284 1.284 12 H -0.290 1.290 13 H -0.292 1.292 14 N -0.665 5.665 15 C 0.119 3.881 16 C -0.101 4.101 17 C -0.121 4.121 18 C -0.116 4.116 19 C -0.112 4.112 20 C -0.131 4.131 21 C 0.051 3.949 22 H 0.022 0.978 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.034 0.966 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.297 0.703 30 H 0.309 0.691 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.060 0.940 42 H 0.043 0.957 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.868 3.392 5.778 7.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.250 5.250 3 C -0.091 4.091 4 C -0.183 4.183 5 C 0.145 3.855 6 C -0.640 4.640 7 H 0.061 0.939 8 C -0.167 4.167 9 N -0.522 5.522 10 Si 0.878 3.122 11 H -0.209 1.209 12 H -0.217 1.217 13 H -0.219 1.219 14 N -0.294 5.294 15 C 0.009 3.991 16 C -0.139 4.139 17 C -0.159 4.159 18 C -0.153 4.153 19 C -0.150 4.150 20 C -0.170 4.170 21 C -0.077 4.077 22 H 0.040 0.960 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.112 0.888 30 H 0.126 0.874 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.166 1.972 4.194 5.613 hybrid contribution -0.488 1.982 1.497 2.531 sum 2.678 3.954 5.691 7.429 Atomic orbital electron populations 1.22414 0.89845 1.01316 0.99609 1.65454 1.06734 1.14912 1.37931 1.22974 0.96792 0.90387 0.98958 1.23094 0.94166 1.02187 0.98803 1.19392 0.87783 0.84580 0.93720 1.21637 1.54619 0.96452 0.91300 0.93886 1.25345 0.94046 0.93335 1.03992 1.70549 1.40390 1.18368 1.22894 0.83878 0.76354 0.75527 0.76452 1.20926 1.21666 1.21869 1.60921 1.01231 1.46030 1.21246 1.21016 0.88311 0.97643 0.92135 1.21599 0.92259 0.98468 1.01613 1.21601 0.97632 1.00771 0.95884 1.21525 0.97903 1.00052 0.95866 1.21446 0.95997 0.99796 0.97753 1.22004 0.95524 1.00836 0.98605 1.23442 0.97072 0.99360 0.87853 0.95953 0.91927 0.92558 0.92156 0.94809 0.93399 0.92186 0.88795 0.87415 0.93387 0.93429 0.88811 0.92775 0.93010 0.93215 0.92479 0.92538 0.93080 0.93296 0.92168 0.93883 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.53 60.06 0.57 0.86 16 2 N -0.53 -10.29 5.66 -238.09 -1.35 -11.63 16 3 C 0.04 0.70 6.49 -2.18 -0.01 0.68 16 4 C -0.14 -2.94 5.38 -25.35 -0.14 -3.07 16 5 C 0.24 5.39 0.39 -131.37 -0.05 5.34 16 6 C -0.60 -15.52 6.24 -34.44 -0.22 -15.74 16 7 H 0.04 1.15 7.38 -52.48 -0.39 0.77 16 8 C 0.04 1.15 3.36 -17.82 -0.06 1.09 16 9 N -0.89 -24.68 13.09 55.43 0.73 -23.95 16 10 Si 1.05 24.34 29.91 -169.99 -5.08 19.26 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 14 N -0.67 -14.63 4.33 -92.81 -0.40 -15.03 16 15 C 0.12 2.41 1.47 -67.71 -0.10 2.31 16 16 C -0.10 -2.14 5.40 -26.73 -0.14 -2.28 16 17 C -0.12 -2.11 5.92 -26.73 -0.16 -2.27 16 18 C -0.12 -1.73 5.92 -26.73 -0.16 -1.89 16 19 C -0.11 -1.66 5.92 -26.73 -0.16 -1.82 16 20 C -0.13 -2.22 5.04 -26.73 -0.13 -2.36 16 21 C 0.05 1.15 4.77 -2.09 -0.01 1.14 16 22 H 0.02 0.37 7.98 -51.93 -0.41 -0.04 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.03 0.63 7.98 -51.93 -0.41 0.22 16 27 H 0.05 0.95 7.38 -51.93 -0.38 0.56 16 28 H 0.06 1.28 7.43 -51.93 -0.39 0.89 16 29 H 0.30 8.26 4.82 -40.82 -0.20 8.06 16 30 H 0.31 6.55 8.13 -39.29 -0.32 6.23 16 31 H 0.05 1.07 6.44 -51.93 -0.33 0.73 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.09 2.32 5.14 -51.93 -0.27 2.05 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.04 1.06 7.62 -51.93 -0.40 0.67 16 43 H 0.07 1.79 7.00 -51.93 -0.36 1.43 16 LS Contribution 315.12 15.07 4.75 4.75 Total: -1.00 -26.41 315.12 -9.85 -36.26 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -7.73 Total: 8.36 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -0.77 Total: -18.00 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -1.02 Total: -50.62 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -5.08 Total: 19.26 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.41 -9.85 -36.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260564166.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.519 kcal (2) G-P(sol) polarization free energy of solvation -26.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds