Wall clock time and date at job start Mon Mar 30 2020 03:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.48560 * 111.00280 * 2 1 4 4 C 1.54381 * 104.59602 * 200.95791 * 3 2 1 5 5 C 1.54255 * 105.06053 * 23.85356 * 4 3 2 6 6 C 1.50699 * 110.32591 * 118.89410 * 5 4 3 7 7 H 1.08006 * 119.99994 * 3.43766 * 6 5 4 8 8 C 1.37881 * 120.00125 * 183.44297 * 6 5 4 9 9 N 1.31510 * 120.00002 * 351.99001 * 8 6 5 10 10 Si 1.86800 * 119.99886 * 171.99574 * 8 6 5 11 11 H 1.48503 * 109.46830 * 179.97438 * 10 8 6 12 12 H 1.48507 * 109.47180 * 59.99802 * 10 8 6 13 13 H 1.48499 * 109.47216 * 299.99613 * 10 8 6 14 14 N 1.46895 * 110.32346 * 241.00255 * 5 4 3 15 15 C 1.46905 * 110.99860 * 295.08513 * 14 5 4 16 16 C 1.53000 * 109.47216 * 255.64389 * 15 14 5 17 17 C 1.52999 * 109.46720 * 180.02562 * 16 15 14 18 18 C 1.53002 * 109.47509 * 60.00108 * 17 16 15 19 19 C 1.52997 * 109.46895 * 300.00219 * 18 17 16 20 20 C 1.52999 * 109.47749 * 59.99653 * 19 18 17 21 21 C 1.48724 * 111.01505 * 244.48940 * 2 1 3 22 22 H 1.09003 * 109.47220 * 60.12787 * 1 2 3 23 23 H 1.08998 * 109.47425 * 180.12671 * 1 2 3 24 24 H 1.09004 * 109.47356 * 300.13095 * 1 2 3 25 25 H 1.08995 * 110.41320 * 82.18057 * 3 2 1 26 26 H 1.08999 * 110.51209 * 319.78782 * 3 2 1 27 27 H 1.09001 * 110.32478 * 264.95572 * 4 3 2 28 28 H 1.09001 * 110.32098 * 142.74849 * 4 3 2 29 29 H 0.97006 * 119.99710 * 4.41756 * 9 8 6 30 30 H 1.00898 * 111.00223 * 59.04390 * 14 5 4 31 31 H 1.08997 * 109.46915 * 15.64746 * 15 14 5 32 32 H 1.08997 * 109.47470 * 300.00017 * 16 15 14 33 33 H 1.08996 * 109.47039 * 60.00436 * 16 15 14 34 34 H 1.09001 * 109.47198 * 299.99679 * 17 16 15 35 35 H 1.09008 * 109.47131 * 180.02562 * 17 16 15 36 36 H 1.08999 * 109.47681 * 179.97438 * 18 17 16 37 37 H 1.09007 * 109.46394 * 59.99620 * 18 17 16 38 38 H 1.08997 * 109.47115 * 299.99518 * 19 18 17 39 39 H 1.09000 * 109.46986 * 180.02562 * 19 18 17 40 40 H 1.08991 * 109.47425 * 179.97438 * 20 19 18 41 41 H 1.08997 * 109.46922 * 59.99747 * 20 19 18 42 42 H 1.09000 * 110.39072 * 40.24591 * 21 2 1 43 43 H 1.08997 * 110.51073 * 277.74745 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4433 -0.0539 -1.3584 6 6 3.7895 0.2355 -2.7963 7 1 4.0474 1.2400 -3.0980 8 6 3.7769 -0.7820 -3.7267 9 7 3.6186 -2.0279 -3.3365 10 14 3.9849 -0.3908 -5.5414 11 1 3.9359 -1.6495 -6.3279 12 1 5.2940 0.2765 -5.7571 13 1 2.8909 0.5115 -5.9819 14 7 4.3951 -1.0172 -0.7893 15 6 5.7737 -0.5209 -0.8962 16 6 6.4962 -1.2610 -2.0236 17 6 7.9321 -0.7445 -2.1345 18 6 8.6649 -0.9872 -0.8134 19 6 7.9423 -0.2471 0.3140 20 6 6.5064 -0.7636 0.4249 21 6 2.0023 -0.5979 -1.2530 22 1 -0.3634 0.5119 -0.8911 23 1 -0.3634 -1.0276 0.0023 24 1 -0.3634 0.5159 0.8888 25 1 2.0079 1.7916 1.0120 26 1 1.4105 2.0229 -0.6591 27 1 4.1483 1.1747 0.2935 28 1 3.6937 2.0995 -1.1699 29 1 3.4466 -2.2255 -2.4025 30 1 4.1619 -1.2334 0.1683 31 1 5.7595 0.5472 -1.1133 32 1 6.5104 -2.3290 -1.8065 33 1 5.9740 -1.0884 -2.9646 34 1 7.9183 0.3236 -2.3514 35 1 8.4468 -1.2714 -2.9380 36 1 9.6880 -0.6196 -0.8925 37 1 8.6786 -2.0554 -0.5966 38 1 7.9285 0.8210 0.0971 39 1 8.4646 -0.4196 1.2550 40 1 5.9918 -0.2367 1.2283 41 1 6.5202 -1.8317 0.6418 42 1 1.4105 -0.2753 -2.1096 43 1 2.0108 -1.6856 -1.1836 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260564166.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:06 Heat of formation + Delta-G solvation = -25.193400 kcal Electronic energy + Delta-G solvation = -20606.267745 eV Core-core repulsion = 17877.560973 eV Total energy + Delta-G solvation = -2728.706772 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.59629 -38.90728 -35.91007 -33.81757 -31.90074 -31.42579 -29.86111 -27.86698 -27.18205 -25.03431 -23.31027 -22.58541 -21.95160 -20.95373 -20.38806 -18.56809 -16.92962 -16.61608 -16.02111 -15.61083 -15.40326 -15.33010 -15.04368 -14.88765 -14.62330 -14.10857 -13.80668 -13.58747 -13.23972 -13.04991 -12.99686 -12.55241 -12.41114 -12.32134 -12.16569 -12.10902 -11.93735 -11.88632 -11.84928 -11.59278 -11.32010 -10.95875 -10.82024 -10.41982 -10.10566 -9.44673 -8.85022 -8.10388 -6.02268 1.54670 1.58806 1.77570 2.64996 3.21793 3.39029 3.65933 3.96763 4.01991 4.02093 4.09548 4.20744 4.39594 4.45505 4.51203 4.54489 4.60572 4.68545 4.72007 4.74979 4.79989 4.85836 4.88418 4.90806 4.97264 5.04172 5.10447 5.12667 5.21320 5.33487 5.36707 5.40555 5.44496 5.56744 5.71846 5.77687 5.92563 6.13803 6.16831 6.45820 6.85410 6.97815 7.26573 7.83326 9.18301 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015950 B = 0.010682 C = 0.007178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.021638 B = 2620.499399 C = 3899.944418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.526 5.526 3 C 0.042 3.958 4 C -0.137 4.137 5 C 0.229 3.771 6 C -0.604 4.604 7 H 0.025 0.975 8 C 0.012 3.988 9 N -0.911 5.911 10 Si 1.080 2.920 11 H -0.289 1.289 12 H -0.280 1.280 13 H -0.282 1.282 14 N -0.675 5.675 15 C 0.124 3.876 16 C -0.097 4.097 17 C -0.118 4.118 18 C -0.110 4.110 19 C -0.108 4.108 20 C -0.123 4.123 21 C 0.065 3.935 22 H 0.018 0.982 23 H 0.067 0.933 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.033 0.967 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.290 0.710 30 H 0.313 0.687 31 H 0.027 0.973 32 H 0.030 0.970 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.014 0.986 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.657 4.247 7.436 9.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.250 5.250 3 C -0.086 4.086 4 C -0.177 4.177 5 C 0.138 3.862 6 C -0.643 4.643 7 H 0.044 0.956 8 C -0.194 4.194 9 N -0.547 5.547 10 Si 0.907 3.093 11 H -0.214 1.214 12 H -0.206 1.206 13 H -0.208 1.208 14 N -0.304 5.304 15 C 0.014 3.986 16 C -0.136 4.136 17 C -0.156 4.156 18 C -0.148 4.148 19 C -0.146 4.146 20 C -0.162 4.162 21 C -0.064 4.064 22 H 0.037 0.963 23 H 0.086 0.914 24 H 0.104 0.896 25 H 0.108 0.892 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.131 0.869 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.033 0.967 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.951 2.847 5.863 7.622 hybrid contribution -0.767 1.733 0.985 2.136 sum 3.185 4.580 6.848 8.833 Atomic orbital electron populations 1.22510 0.87740 1.02162 1.00853 1.65427 1.08765 1.15307 1.35518 1.22999 0.95165 0.89937 1.00511 1.22970 0.95946 1.00267 0.98508 1.19337 0.87993 0.86036 0.92795 1.21804 1.53884 0.95379 0.93239 0.95642 1.26188 0.93502 0.93067 1.06685 1.70621 1.42528 1.19097 1.22501 0.83430 0.77008 0.75340 0.73517 1.21434 1.20638 1.20804 1.60766 1.02002 1.46231 1.21445 1.20967 0.87799 0.95908 0.93946 1.21477 0.94489 0.97696 0.99911 1.21556 0.95575 1.00312 0.98124 1.21492 0.98867 1.00435 0.93980 1.21449 0.94498 0.99599 0.99082 1.21906 0.96775 1.01038 0.96437 1.23091 0.96886 0.98066 0.88378 0.96298 0.91443 0.89562 0.89186 0.94818 0.92490 0.93468 0.89638 0.86915 0.95518 0.95077 0.92915 0.93125 0.92451 0.90508 0.92255 0.92494 0.90224 0.92441 0.92260 0.96742 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.53 127.69 1.22 1.72 16 2 N -0.53 -19.93 5.66 -907.17 -5.13 -25.06 16 3 C 0.04 1.50 6.49 86.45 0.56 2.06 16 4 C -0.14 -5.57 5.38 31.49 0.17 -5.40 16 5 C 0.23 10.65 0.39 3.68 0.00 10.65 16 6 C -0.60 -32.11 6.24 25.60 0.16 -31.95 16 7 H 0.03 1.41 7.38 -2.91 -0.02 1.38 16 8 C 0.01 0.66 3.36 84.66 0.28 0.94 16 9 N -0.91 -52.40 13.09 21.45 0.28 -52.12 16 10 Si 1.08 50.21 29.91 68.60 2.05 52.26 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 14 N -0.68 -30.11 4.33 -447.55 -1.94 -32.04 16 15 C 0.12 5.02 1.47 44.92 0.07 5.08 16 16 C -0.10 -4.18 5.40 30.59 0.17 -4.01 16 17 C -0.12 -4.02 5.92 30.59 0.18 -3.84 16 18 C -0.11 -3.00 5.92 30.59 0.18 -2.82 16 19 C -0.11 -2.88 5.92 30.59 0.18 -2.70 16 20 C -0.12 -3.95 5.04 30.60 0.15 -3.80 16 21 C 0.06 2.98 4.77 86.42 0.41 3.39 16 22 H 0.02 0.60 7.98 -2.39 -0.02 0.58 16 23 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 26 H 0.03 1.20 7.98 -2.39 -0.02 1.18 16 27 H 0.06 2.18 7.38 -2.39 -0.02 2.16 16 28 H 0.05 2.01 7.43 -2.39 -0.02 1.99 16 29 H 0.29 16.71 4.82 -92.70 -0.45 16.27 16 30 H 0.31 13.25 8.13 -89.70 -0.73 12.52 16 31 H 0.03 1.20 6.44 -2.39 -0.02 1.18 16 32 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.05 2.69 5.14 -2.39 -0.01 2.68 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 36 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.01 0.73 7.62 -2.39 -0.02 0.71 16 43 H 0.05 2.63 7.00 -2.39 -0.02 2.61 16 Total: -1.00 -58.39 315.12 -0.45 -58.84 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 0.55 Total: 28.80 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 3.73 Total: -30.67 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -6.79 Total: -109.22 kcal Atomic # 14 Polarization: 50.21 SS G_CDS: 2.05 Total: 52.26 kcal Total: -58.39 -0.45 -58.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260564166.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.644 kcal (2) G-P(sol) polarization free energy of solvation -58.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds