Wall clock time and date at job start Mon Mar 30 2020 03:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.48561 * 111.00109 * 2 1 4 4 C 1.54377 * 104.59614 * 200.96255 * 3 2 1 5 5 C 1.54265 * 105.05898 * 23.85086 * 4 3 2 6 6 C 1.50695 * 110.32486 * 241.10088 * 5 4 3 7 7 H 1.08002 * 119.99573 * 122.59153 * 6 5 4 8 8 C 1.37875 * 120.00324 * 302.59836 * 6 5 4 9 9 N 1.31512 * 120.00241 * 359.55522 * 8 6 5 10 10 Si 1.86802 * 120.00022 * 179.55677 * 8 6 5 11 11 H 1.48500 * 109.47024 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46999 * 119.99481 * 10 8 6 13 13 H 1.48494 * 109.47386 * 239.99668 * 10 8 6 14 14 N 1.46898 * 110.31790 * 118.99956 * 5 4 3 15 15 C 1.46903 * 110.99719 * 186.09666 * 14 5 4 16 16 C 1.52999 * 109.47362 * 264.72841 * 15 14 5 17 17 C 1.53004 * 109.47094 * 180.02562 * 16 15 14 18 18 C 1.53001 * 109.47154 * 59.99648 * 17 16 15 19 19 C 1.52999 * 109.47408 * 300.00160 * 18 17 16 20 20 C 1.53001 * 109.46857 * 144.72506 * 15 14 5 21 21 C 1.48562 * 110.99687 * 244.58398 * 2 1 3 22 22 H 1.09004 * 109.47451 * 60.12356 * 1 2 3 23 23 H 1.09005 * 109.47303 * 180.12407 * 1 2 3 24 24 H 1.09004 * 109.47011 * 300.12485 * 1 2 3 25 25 H 1.09001 * 110.41123 * 82.18548 * 3 2 1 26 26 H 1.08997 * 110.41149 * 319.74371 * 3 2 1 27 27 H 1.09000 * 110.32190 * 264.95644 * 4 3 2 28 28 H 1.08998 * 110.41419 * 142.79450 * 4 3 2 29 29 H 0.97000 * 119.99689 * 4.95631 * 9 8 6 30 30 H 1.00901 * 111.00233 * 62.15154 * 14 5 4 31 31 H 1.09001 * 109.46917 * 24.73356 * 15 14 5 32 32 H 1.08998 * 109.47108 * 299.99515 * 16 15 14 33 33 H 1.08988 * 109.47155 * 60.00170 * 16 15 14 34 34 H 1.09001 * 109.46889 * 300.00334 * 17 16 15 35 35 H 1.08993 * 109.47485 * 180.02562 * 17 16 15 36 36 H 1.09000 * 109.46685 * 180.02562 * 18 17 16 37 37 H 1.09002 * 109.47014 * 60.00133 * 18 17 16 38 38 H 1.09002 * 109.47011 * 299.99975 * 19 18 17 39 39 H 1.09000 * 109.47410 * 180.02562 * 19 18 17 40 40 H 1.08992 * 109.47732 * 300.00347 * 20 15 14 41 41 H 1.08998 * 109.47384 * 60.00625 * 20 15 14 42 42 H 1.08994 * 110.41051 * 40.26146 * 21 2 1 43 43 H 1.08999 * 110.41187 * 277.81327 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4432 1.2501 -0.5345 5 6 3.4431 -0.0539 -1.3586 6 6 4.4179 -1.0430 -0.7734 7 1 4.0759 -2.0194 -0.4636 8 6 5.7463 -0.7013 -0.6333 9 7 6.1644 0.4846 -1.0184 10 14 6.9523 -1.9228 0.1036 11 1 6.2362 -3.1760 0.4529 12 1 8.0195 -2.2223 -0.8846 13 1 7.5599 -1.3417 1.3276 14 7 3.7829 0.2280 -2.7596 15 6 3.6467 -0.9780 -3.5873 16 6 5.0080 -1.6643 -3.7166 17 6 4.8661 -2.9201 -4.5792 18 6 4.3576 -2.5297 -5.9684 19 6 2.9964 -1.8434 -5.8391 20 6 3.1379 -0.5882 -4.9766 21 6 2.0013 -0.5953 -1.2527 22 1 -0.3634 0.5119 -0.8911 23 1 -0.3634 -1.0277 0.0022 24 1 -0.3633 0.5158 0.8889 25 1 2.0079 1.7916 1.0121 26 1 1.4098 2.0212 -0.6601 27 1 4.1482 1.1748 0.2934 28 1 3.6954 2.0993 -1.1696 29 1 5.5274 1.1446 -1.3339 30 1 4.7114 0.6156 -2.8356 31 1 2.9381 -1.6615 -3.1195 32 1 5.7165 -0.9808 -4.1845 33 1 5.3703 -1.9420 -2.7269 34 1 4.1574 -3.6037 -4.1118 35 1 5.8357 -3.4093 -4.6710 36 1 4.2562 -3.4244 -6.5827 37 1 5.0663 -1.8460 -6.4358 38 1 2.2877 -2.5271 -5.3717 39 1 2.6339 -1.5657 -6.8289 40 1 2.1682 -0.0993 -4.8845 41 1 3.8465 0.0953 -5.4444 42 1 1.4097 -0.2712 -2.1089 43 1 2.0078 -1.6831 -1.1839 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260564190.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:09 Heat of formation + Delta-G solvation = -9.278769 kcal Electronic energy + Delta-G solvation = -20611.595099 eV Core-core repulsion = 17883.578437 eV Total energy + Delta-G solvation = -2728.016662 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.98741 -37.46934 -34.57131 -31.90587 -30.25454 -30.08665 -28.21454 -26.76894 -24.89928 -23.65373 -21.89098 -21.31065 -20.38453 -19.00625 -18.90238 -17.09316 -15.20837 -15.15284 -14.68004 -13.85533 -13.83677 -13.66700 -13.50711 -13.31682 -12.97303 -12.66396 -12.41774 -12.03206 -11.65435 -11.56242 -11.49926 -11.00296 -10.83540 -10.70178 -10.57996 -10.53033 -10.38782 -10.25141 -10.13210 -9.98066 -9.71547 -9.55334 -9.33626 -8.96180 -8.30730 -7.79956 -7.04785 -6.27323 -4.08054 3.41895 3.43973 3.58042 4.48540 4.69308 5.14339 5.22914 5.32438 5.34099 5.56063 5.65398 5.67149 5.80903 5.84490 5.89846 6.00490 6.06808 6.09160 6.10053 6.14114 6.16236 6.24851 6.32877 6.40144 6.42823 6.44939 6.60146 6.64499 6.71636 6.76646 6.86783 6.94986 7.06696 7.09128 7.33560 7.41322 7.63035 7.73317 8.04662 8.29349 8.59074 8.76530 8.85428 9.58926 11.00601 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.014569 B = 0.011277 C = 0.007380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.477126 B = 2482.294132 C = 3793.117667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.508 5.508 3 C 0.038 3.962 4 C -0.106 4.106 5 C 0.219 3.781 6 C -0.590 4.590 7 H 0.049 0.951 8 C 0.030 3.970 9 N -0.916 5.916 10 Si 1.060 2.940 11 H -0.290 1.290 12 H -0.288 1.288 13 H -0.288 1.288 14 N -0.691 5.691 15 C 0.109 3.891 16 C -0.143 4.143 17 C -0.116 4.116 18 C -0.117 4.117 19 C -0.116 4.116 20 C -0.108 4.108 21 C 0.058 3.942 22 H 0.019 0.981 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.029 0.971 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.275 0.725 30 H 0.342 0.658 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.029 0.971 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.033 -2.334 -5.270 8.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.232 5.232 3 C -0.090 4.090 4 C -0.145 4.145 5 C 0.129 3.871 6 C -0.631 4.631 7 H 0.067 0.933 8 C -0.175 4.175 9 N -0.555 5.555 10 Si 0.889 3.111 11 H -0.215 1.215 12 H -0.214 1.214 13 H -0.214 1.214 14 N -0.322 5.322 15 C -0.002 4.002 16 C -0.181 4.181 17 C -0.155 4.155 18 C -0.154 4.154 19 C -0.154 4.154 20 C -0.146 4.146 21 C -0.070 4.070 22 H 0.037 0.963 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.047 0.953 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.163 0.837 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.047 0.953 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.922 -2.602 -4.579 7.208 hybrid contribution -1.153 0.154 -0.722 1.369 sum -6.075 -2.448 -5.301 8.426 Atomic orbital electron populations 1.22468 0.89974 1.01158 0.99710 1.65284 1.06015 1.15499 1.36418 1.23061 0.97022 0.89530 0.99396 1.22451 0.94010 0.98184 0.99814 1.19287 0.90899 0.91929 0.84967 1.22413 0.94973 1.01074 1.44606 0.93295 1.25560 0.97425 0.99543 0.94971 1.70797 1.38538 1.05279 1.40922 0.83681 0.75620 0.75067 0.76740 1.21550 1.21437 1.21432 1.61187 1.33485 1.27387 1.10187 1.21116 0.95634 0.91614 0.91795 1.22320 0.98299 0.95921 1.01587 1.21526 1.00031 0.98675 0.95231 1.21531 0.97090 0.99384 0.97427 1.21498 0.97047 0.97768 0.99057 1.21578 1.00671 0.96258 0.96110 1.23102 0.96508 0.98807 0.88570 0.96276 0.92071 0.92199 0.91741 0.95314 0.90826 0.93062 0.91075 0.83743 0.91898 0.93406 0.88795 0.92590 0.93025 0.93114 0.92495 0.92555 0.92964 0.92703 0.92815 0.95324 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.53 60.06 0.57 0.84 16 2 N -0.51 -10.27 5.66 -238.23 -1.35 -11.62 16 3 C 0.04 0.76 6.49 -2.18 -0.01 0.74 16 4 C -0.11 -2.40 4.64 -25.35 -0.12 -2.52 16 5 C 0.22 5.05 0.53 -131.37 -0.07 4.98 16 6 C -0.59 -15.14 5.86 -34.44 -0.20 -15.34 16 7 H 0.05 1.33 7.52 -52.49 -0.39 0.93 16 8 C 0.03 0.77 3.88 -17.82 -0.07 0.71 16 9 N -0.92 -24.99 12.58 55.43 0.70 -24.30 16 10 Si 1.06 24.46 29.79 -169.99 -5.06 19.40 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 14 N -0.69 -15.19 5.80 -92.81 -0.54 -15.73 16 15 C 0.11 2.16 1.92 -67.71 -0.13 2.03 16 16 C -0.14 -2.86 4.95 -26.73 -0.13 -2.99 16 17 C -0.12 -1.93 5.92 -26.73 -0.16 -2.09 16 18 C -0.12 -1.68 5.92 -26.73 -0.16 -1.84 16 19 C -0.12 -1.67 5.92 -26.75 -0.16 -1.83 16 20 C -0.11 -1.83 5.53 -26.75 -0.15 -1.98 16 21 C 0.06 1.24 4.17 -2.18 -0.01 1.24 16 22 H 0.02 0.30 7.97 -51.93 -0.41 -0.12 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.03 0.54 7.97 -51.93 -0.41 0.12 16 27 H 0.07 1.87 6.94 -51.93 -0.36 1.51 16 28 H 0.05 1.16 7.63 -51.93 -0.40 0.76 16 29 H 0.28 7.38 4.26 -40.82 -0.17 7.21 16 30 H 0.34 8.18 6.00 -39.29 -0.24 7.95 16 31 H 0.06 1.32 6.26 -51.93 -0.33 0.99 16 32 H 0.05 0.99 8.12 -51.93 -0.42 0.57 16 33 H 0.09 2.17 5.12 -51.94 -0.27 1.91 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.03 0.60 7.73 -51.93 -0.40 0.20 16 43 H 0.07 1.46 7.40 -51.93 -0.38 1.08 16 LS Contribution 312.89 15.07 4.72 4.72 Total: -1.00 -26.20 312.89 -9.97 -36.17 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -7.63 Total: 9.43 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -0.79 Total: -18.06 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: -1.19 Total: -51.65 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -5.06 Total: 19.40 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -26.20 -9.97 -36.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260564190.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.890 kcal (2) G-P(sol) polarization free energy of solvation -26.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds