Wall clock time and date at job start Mon Mar 30 2020 03:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.48561 * 111.00109 * 2 1 4 4 C 1.54377 * 104.59614 * 200.96255 * 3 2 1 5 5 C 1.54265 * 105.05898 * 23.85086 * 4 3 2 6 6 C 1.50695 * 110.32486 * 241.10088 * 5 4 3 7 7 H 1.08002 * 119.99573 * 122.59153 * 6 5 4 8 8 C 1.37875 * 120.00324 * 302.59836 * 6 5 4 9 9 N 1.31512 * 120.00241 * 359.55522 * 8 6 5 10 10 Si 1.86802 * 120.00022 * 179.55677 * 8 6 5 11 11 H 1.48500 * 109.47024 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46999 * 119.99481 * 10 8 6 13 13 H 1.48494 * 109.47386 * 239.99668 * 10 8 6 14 14 N 1.46898 * 110.31790 * 118.99956 * 5 4 3 15 15 C 1.46903 * 110.99719 * 186.09666 * 14 5 4 16 16 C 1.52999 * 109.47362 * 264.72841 * 15 14 5 17 17 C 1.53004 * 109.47094 * 180.02562 * 16 15 14 18 18 C 1.53001 * 109.47154 * 59.99648 * 17 16 15 19 19 C 1.52999 * 109.47408 * 300.00160 * 18 17 16 20 20 C 1.53001 * 109.46857 * 144.72506 * 15 14 5 21 21 C 1.48562 * 110.99687 * 244.58398 * 2 1 3 22 22 H 1.09004 * 109.47451 * 60.12356 * 1 2 3 23 23 H 1.09005 * 109.47303 * 180.12407 * 1 2 3 24 24 H 1.09004 * 109.47011 * 300.12485 * 1 2 3 25 25 H 1.09001 * 110.41123 * 82.18548 * 3 2 1 26 26 H 1.08997 * 110.41149 * 319.74371 * 3 2 1 27 27 H 1.09000 * 110.32190 * 264.95644 * 4 3 2 28 28 H 1.08998 * 110.41419 * 142.79450 * 4 3 2 29 29 H 0.97000 * 119.99689 * 4.95631 * 9 8 6 30 30 H 1.00901 * 111.00233 * 62.15154 * 14 5 4 31 31 H 1.09001 * 109.46917 * 24.73356 * 15 14 5 32 32 H 1.08998 * 109.47108 * 299.99515 * 16 15 14 33 33 H 1.08988 * 109.47155 * 60.00170 * 16 15 14 34 34 H 1.09001 * 109.46889 * 300.00334 * 17 16 15 35 35 H 1.08993 * 109.47485 * 180.02562 * 17 16 15 36 36 H 1.09000 * 109.46685 * 180.02562 * 18 17 16 37 37 H 1.09002 * 109.47014 * 60.00133 * 18 17 16 38 38 H 1.09002 * 109.47011 * 299.99975 * 19 18 17 39 39 H 1.09000 * 109.47410 * 180.02562 * 19 18 17 40 40 H 1.08992 * 109.47732 * 300.00347 * 20 15 14 41 41 H 1.08998 * 109.47384 * 60.00625 * 20 15 14 42 42 H 1.08994 * 110.41051 * 40.26146 * 21 2 1 43 43 H 1.08999 * 110.41187 * 277.81327 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4432 1.2501 -0.5345 5 6 3.4431 -0.0539 -1.3586 6 6 4.4179 -1.0430 -0.7734 7 1 4.0759 -2.0194 -0.4636 8 6 5.7463 -0.7013 -0.6333 9 7 6.1644 0.4846 -1.0184 10 14 6.9523 -1.9228 0.1036 11 1 6.2362 -3.1760 0.4529 12 1 8.0195 -2.2223 -0.8846 13 1 7.5599 -1.3417 1.3276 14 7 3.7829 0.2280 -2.7596 15 6 3.6467 -0.9780 -3.5873 16 6 5.0080 -1.6643 -3.7166 17 6 4.8661 -2.9201 -4.5792 18 6 4.3576 -2.5297 -5.9684 19 6 2.9964 -1.8434 -5.8391 20 6 3.1379 -0.5882 -4.9766 21 6 2.0013 -0.5953 -1.2527 22 1 -0.3634 0.5119 -0.8911 23 1 -0.3634 -1.0277 0.0022 24 1 -0.3633 0.5158 0.8889 25 1 2.0079 1.7916 1.0121 26 1 1.4098 2.0212 -0.6601 27 1 4.1482 1.1748 0.2934 28 1 3.6954 2.0993 -1.1696 29 1 5.5274 1.1446 -1.3339 30 1 4.7114 0.6156 -2.8356 31 1 2.9381 -1.6615 -3.1195 32 1 5.7165 -0.9808 -4.1845 33 1 5.3703 -1.9420 -2.7269 34 1 4.1574 -3.6037 -4.1118 35 1 5.8357 -3.4093 -4.6710 36 1 4.2562 -3.4244 -6.5827 37 1 5.0663 -1.8460 -6.4358 38 1 2.2877 -2.5271 -5.3717 39 1 2.6339 -1.5657 -6.8289 40 1 2.1682 -0.0993 -4.8845 41 1 3.8465 0.0953 -5.4444 42 1 1.4097 -0.2712 -2.1089 43 1 2.0078 -1.6831 -1.1839 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260564190.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:09 Heat of formation + Delta-G solvation = -25.724345 kcal Electronic energy + Delta-G solvation = -20612.308233 eV Core-core repulsion = 17883.578437 eV Total energy + Delta-G solvation = -2728.729795 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.65626 -38.93895 -36.23736 -33.69309 -31.86772 -31.49494 -29.86230 -28.35657 -26.71242 -25.33667 -23.29396 -22.79571 -21.90781 -20.80514 -20.40949 -19.01286 -16.83645 -16.69733 -16.20302 -15.73859 -15.26834 -15.14066 -14.94999 -14.88962 -14.58535 -14.20827 -14.05497 -13.52410 -13.24654 -13.07472 -13.05275 -12.66838 -12.55618 -12.29940 -12.14302 -11.99710 -11.97819 -11.94547 -11.76687 -11.45990 -11.40491 -11.18482 -10.91484 -10.73223 -10.26923 -9.35466 -8.89758 -8.32325 -6.15700 1.50757 1.55693 1.71883 2.56159 3.10642 3.31592 3.73873 3.90541 4.01236 4.05747 4.09127 4.25340 4.33738 4.42524 4.48532 4.51184 4.58135 4.67769 4.69944 4.72541 4.78100 4.79719 4.89829 4.91414 4.94001 5.00842 5.15629 5.21694 5.24309 5.28055 5.31977 5.37460 5.45243 5.51064 5.59958 5.76602 5.96393 6.09859 6.22708 6.25940 6.70139 6.84379 6.88742 7.55630 8.93420 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.014569 B = 0.011277 C = 0.007380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.477126 B = 2482.294132 C = 3793.117667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.528 5.528 3 C 0.046 3.954 4 C -0.102 4.102 5 C 0.211 3.789 6 C -0.588 4.588 7 H 0.026 0.974 8 C -0.002 4.002 9 N -0.937 5.937 10 Si 1.090 2.910 11 H -0.282 1.282 12 H -0.283 1.283 13 H -0.286 1.286 14 N -0.687 5.687 15 C 0.109 3.891 16 C -0.138 4.138 17 C -0.114 4.114 18 C -0.112 4.112 19 C -0.111 4.111 20 C -0.101 4.101 21 C 0.071 3.929 22 H 0.028 0.972 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.045 0.955 27 H 0.040 0.960 28 H 0.046 0.954 29 H 0.271 0.729 30 H 0.329 0.671 31 H 0.050 0.950 32 H 0.033 0.967 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.034 0.966 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.433 -2.899 -6.376 10.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.252 5.252 3 C -0.082 4.082 4 C -0.141 4.141 5 C 0.121 3.879 6 C -0.628 4.628 7 H 0.045 0.955 8 C -0.203 4.203 9 N -0.577 5.577 10 Si 0.917 3.083 11 H -0.208 1.208 12 H -0.209 1.209 13 H -0.213 1.213 14 N -0.317 5.317 15 C -0.001 4.001 16 C -0.177 4.177 17 C -0.152 4.152 18 C -0.149 4.149 19 C -0.149 4.149 20 C -0.139 4.139 21 C -0.057 4.057 22 H 0.046 0.954 23 H 0.089 0.911 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.147 0.853 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.052 0.948 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.346 -3.176 -5.689 9.096 hybrid contribution -0.740 0.325 -0.348 0.880 sum -7.087 -2.851 -6.037 9.737 Atomic orbital electron populations 1.22544 0.87165 1.02339 1.01118 1.65240 1.08805 1.15535 1.35630 1.22992 0.95011 0.89851 1.00336 1.22302 0.95446 0.97831 0.98547 1.19336 0.91523 0.91607 0.85459 1.22488 0.95658 1.00503 1.44163 0.95520 1.26354 0.98886 1.00035 0.94991 1.70850 1.38605 1.05861 1.42413 0.83261 0.74625 0.74134 0.76323 1.20777 1.20918 1.21281 1.61272 1.32321 1.28405 1.09748 1.21199 0.95259 0.90607 0.93048 1.22174 0.97872 0.97370 1.00250 1.21501 1.00732 0.96799 0.96153 1.21507 0.96858 1.00593 0.95974 1.21487 0.97282 0.96332 0.99782 1.21500 1.00258 0.97682 0.94468 1.22863 0.95464 0.97864 0.89539 0.95357 0.91104 0.90162 0.90419 0.93688 0.94147 0.93568 0.91569 0.85272 0.93178 0.94812 0.92384 0.92531 0.92327 0.90364 0.92439 0.92189 0.90344 0.92611 0.93236 0.94809 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.53 127.69 1.22 1.72 16 2 N -0.53 -20.64 5.66 -907.63 -5.14 -25.78 16 3 C 0.05 1.77 6.49 86.45 0.56 2.34 16 4 C -0.10 -4.71 4.64 31.49 0.15 -4.57 16 5 C 0.21 9.89 0.53 3.68 0.00 9.89 16 6 C -0.59 -31.00 5.86 25.60 0.15 -30.85 16 7 H 0.03 1.49 7.52 -2.91 -0.02 1.47 16 8 C 0.00 -0.10 3.88 84.65 0.33 0.23 16 9 N -0.94 -52.58 12.58 21.45 0.27 -52.31 16 10 Si 1.09 50.27 29.79 68.60 2.04 52.32 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 14 N -0.69 -30.71 5.80 -447.56 -2.60 -33.31 16 15 C 0.11 4.33 1.92 44.91 0.09 4.41 16 16 C -0.14 -5.59 4.95 30.60 0.15 -5.44 16 17 C -0.11 -3.63 5.92 30.60 0.18 -3.45 16 18 C -0.11 -2.91 5.92 30.59 0.18 -2.73 16 19 C -0.11 -2.88 5.92 30.58 0.18 -2.70 16 20 C -0.10 -3.28 5.53 30.58 0.17 -3.11 16 21 C 0.07 3.02 4.17 86.45 0.36 3.38 16 22 H 0.03 0.79 7.97 -2.38 -0.02 0.77 16 23 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 24 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 25 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 26 H 0.04 1.59 7.97 -2.39 -0.02 1.57 16 27 H 0.04 2.10 6.94 -2.39 -0.02 2.08 16 28 H 0.05 2.12 7.63 -2.39 -0.02 2.11 16 29 H 0.27 15.04 4.26 -92.71 -0.40 14.65 16 30 H 0.33 16.20 6.00 -89.69 -0.54 15.67 16 31 H 0.05 2.11 6.26 -2.39 -0.01 2.09 16 32 H 0.03 1.42 8.12 -2.39 -0.02 1.40 16 33 H 0.06 2.76 5.12 -2.39 -0.01 2.75 16 34 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 38 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 41 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 42 H 0.03 1.38 7.73 -2.39 -0.02 1.36 16 43 H 0.05 2.29 7.40 -2.39 -0.02 2.28 16 Total: -1.00 -57.14 312.89 -0.91 -58.05 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: 0.80 Total: 31.92 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 3.72 Total: -30.88 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -7.46 Total: -111.40 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 2.04 Total: 52.32 kcal Total: -57.14 -0.91 -58.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260564190.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.322 kcal (2) G-P(sol) polarization free energy of solvation -57.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds