Wall clock time and date at job start Mon Mar 30 2020 04:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46708 * 111.00162 * 2 1 4 4 C 1.53493 * 110.10523 * 174.02441 * 3 2 1 5 5 C 1.52073 * 108.43493 * 57.08531 * 4 3 2 6 6 H 1.09003 * 101.46107 * 51.36196 * 5 4 3 7 7 C 1.50573 * 111.13582 * 303.72662 * 5 4 3 8 8 H 1.09007 * 107.05807 * 302.32409 * 7 5 4 9 9 C 1.47198 * 111.00150 * 234.68460 * 2 1 3 10 10 C 1.53519 * 114.38712 * 183.85742 * 7 5 4 11 11 H 1.08999 * 109.37800 * 77.47761 * 10 7 5 12 12 C 1.50706 * 109.36987 * 197.23474 * 10 7 5 13 13 H 1.07997 * 120.00216 * 94.68673 * 12 10 7 14 14 C 1.37879 * 119.99588 * 274.67794 * 12 10 7 15 15 N 1.31513 * 119.99793 * 186.02450 * 14 12 10 16 16 Si 1.86797 * 120.00340 * 6.02790 * 14 12 10 17 17 H 1.48509 * 109.47254 * 84.80334 * 16 14 12 18 18 H 1.48495 * 109.47562 * 204.80460 * 16 14 12 19 19 H 1.48505 * 109.47074 * 324.80528 * 16 14 12 20 20 C 1.51399 * 110.06388 * 317.29137 * 10 7 5 21 21 C 1.52501 * 110.24963 * 89.58435 * 20 10 7 22 22 C 1.48050 * 114.46525 * 277.73704 * 21 20 10 23 23 N 1.41139 * 116.22089 * 161.37346 * 5 4 3 24 24 C 1.46903 * 111.00218 * 354.09924 * 23 5 4 25 25 H 1.08999 * 109.47282 * 185.31070 * 1 2 3 26 26 H 1.08998 * 109.47454 * 305.31408 * 1 2 3 27 27 H 1.09004 * 109.46290 * 65.31370 * 1 2 3 28 28 H 1.09002 * 109.36290 * 294.21707 * 3 2 1 29 29 H 1.08998 * 109.36945 * 53.82851 * 3 2 1 30 30 H 1.08996 * 109.64601 * 297.39614 * 4 3 2 31 31 H 1.09005 * 109.63922 * 176.76346 * 4 3 2 32 32 H 1.09004 * 109.62275 * 65.81332 * 9 2 1 33 33 H 1.09006 * 109.62396 * 305.26551 * 9 2 1 34 34 H 0.97001 * 119.99975 * 179.97438 * 15 14 12 35 35 H 1.08997 * 109.34597 * 209.82519 * 20 10 7 36 36 H 1.09006 * 109.34092 * 329.50388 * 20 10 7 37 37 H 1.09000 * 108.48210 * 39.02556 * 21 20 10 38 38 H 1.08999 * 108.48473 * 156.60527 * 21 20 10 39 39 H 1.09003 * 109.45074 * 182.72054 * 22 21 20 40 40 H 1.09000 * 109.45020 * 302.66428 * 22 21 20 41 41 H 1.09007 * 109.46780 * 59.99933 * 24 23 5 42 42 H 1.08997 * 109.47740 * 179.97438 * 24 23 5 43 43 H 1.09002 * 109.47276 * 300.00644 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9949 1.3696 0.0000 4 6 3.5223 1.3484 0.1501 5 6 4.1049 0.5133 -0.9794 6 1 3.6296 0.9650 -1.8502 7 6 3.5158 -0.8724 -0.9897 8 1 3.7193 -1.3136 -0.0139 9 6 1.9966 -0.7944 -1.1213 10 6 4.1204 -1.8104 -2.0440 11 1 5.0903 -2.1669 -1.6972 12 6 3.2011 -2.9862 -2.2528 13 1 2.4743 -2.9683 -3.0514 14 6 3.2882 -4.0850 -1.4245 15 7 2.5706 -5.1577 -1.6774 16 14 4.4253 -4.0499 0.0571 17 1 3.7262 -3.4144 1.2029 18 1 4.8090 -5.4379 0.4197 19 1 5.6448 -3.2695 -0.2732 20 6 4.2955 -1.0739 -3.3551 21 6 5.6674 -0.4101 -3.4085 22 6 5.7445 0.8950 -2.7137 23 7 5.4764 0.7040 -1.2526 24 6 6.0258 1.8028 -0.4471 25 1 -0.3634 -1.0232 0.0951 26 1 -0.3634 0.5940 0.8385 27 1 -0.3632 0.4292 -0.9338 28 1 1.7306 1.8582 -0.9379 29 1 1.5578 1.9246 0.8301 30 1 3.7902 0.9054 1.1092 31 1 3.9103 2.3654 0.0915 32 1 1.7351 -0.3148 -2.0646 33 1 1.5744 -1.7988 -1.0889 34 1 2.6322 -5.9308 -1.0948 35 1 4.2036 -1.7796 -4.1807 36 1 3.5234 -0.3098 -3.4459 37 1 6.3955 -1.0848 -2.9583 38 1 5.9379 -0.2592 -4.4536 39 1 6.7412 1.3169 -2.8433 40 1 5.0048 1.5752 -3.1358 41 1 5.9093 1.5708 0.6116 42 1 7.0839 1.9280 -0.6769 43 1 5.4920 2.7247 -0.6779 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260656020.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:11 Heat of formation + Delta-G solvation = 19.687022 kcal Electronic energy + Delta-G solvation = -20898.939796 eV Core-core repulsion = 18172.179185 eV Total energy + Delta-G solvation = -2726.760611 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.09026 -36.80602 -35.02952 -32.78294 -31.76771 -30.23329 -28.12365 -26.39367 -25.50721 -24.19596 -22.93370 -21.50543 -20.34605 -19.81277 -17.98945 -16.67397 -16.00931 -15.24900 -14.72819 -14.46089 -14.30635 -14.03782 -13.80351 -13.47229 -13.06111 -12.73256 -12.48552 -12.16015 -12.14288 -11.88319 -11.67533 -11.51790 -11.26332 -11.07483 -10.89255 -10.69758 -10.49801 -10.21985 -9.98720 -9.78278 -9.59086 -9.33340 -9.09466 -8.75953 -8.38341 -7.80079 -7.62461 -5.98630 -3.95592 3.44300 3.49950 3.56578 4.03139 4.41257 4.55251 5.00507 5.25905 5.34318 5.36758 5.45993 5.47143 5.51356 5.62454 5.66459 5.75938 5.80846 5.83299 5.88713 6.00979 6.04035 6.10211 6.18372 6.25272 6.28096 6.38879 6.40521 6.47814 6.56109 6.70956 6.88227 7.04907 7.06559 7.15414 7.44613 7.58814 7.62232 7.64755 7.70571 7.85055 7.92300 8.63116 9.05547 9.66028 11.13909 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.011486 C = 0.008585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.230744 B = 2437.121404 C = 3260.531676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.553 5.553 3 C 0.064 3.936 4 C -0.122 4.122 5 C 0.102 3.898 6 H 0.003 0.997 7 C -0.067 4.067 8 H 0.050 0.950 9 C 0.082 3.918 10 C 0.024 3.976 11 H 0.045 0.955 12 C -0.506 4.506 13 H 0.071 0.929 14 C 0.074 3.926 15 N -0.903 5.903 16 Si 0.869 3.131 17 H -0.273 1.273 18 H -0.296 1.296 19 H -0.259 1.259 20 C -0.097 4.097 21 C -0.122 4.122 22 C 0.077 3.923 23 N -0.543 5.543 24 C 0.036 3.964 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.018 0.982 28 H 0.023 0.977 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.019 0.981 33 H 0.106 0.894 34 H 0.262 0.738 35 H 0.060 0.940 36 H 0.038 0.962 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.066 0.934 40 H 0.030 0.970 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.591 14.249 1.820 14.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.278 5.278 3 C -0.065 4.065 4 C -0.160 4.160 5 C -0.008 4.008 6 H 0.021 0.979 7 C -0.087 4.087 8 H 0.068 0.932 9 C -0.045 4.045 10 C 0.005 3.995 11 H 0.063 0.937 12 C -0.544 4.544 13 H 0.089 0.911 14 C -0.127 4.127 15 N -0.542 5.542 16 Si 0.697 3.303 17 H -0.198 1.198 18 H -0.223 1.223 19 H -0.183 1.183 20 C -0.135 4.135 21 C -0.160 4.160 22 C -0.049 4.049 23 N -0.267 5.267 24 C -0.112 4.112 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.037 0.963 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.037 0.963 33 H 0.124 0.876 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.048 0.952 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 2.918 13.443 2.414 13.966 hybrid contribution -0.241 1.059 -0.070 1.089 sum 2.676 14.502 2.344 14.933 Atomic orbital electron populations 1.22260 0.87990 1.02257 0.99263 1.61812 1.06948 1.12276 1.46782 1.22046 0.94911 0.90205 0.99327 1.21872 0.94770 0.99154 1.00241 1.19606 0.86636 0.97636 0.96935 0.97885 1.20909 0.93052 0.92933 1.01798 0.93185 1.22212 0.95304 0.98533 0.88453 1.19011 0.97124 0.93023 0.90358 0.93666 1.21025 1.18947 0.98652 1.15728 0.91132 1.24986 0.95306 0.95108 0.97323 1.69921 1.41780 1.04152 1.38311 0.86993 0.82659 0.76503 0.84133 1.19836 1.22257 1.18334 1.21178 0.93803 0.98158 1.00363 1.20725 1.00264 0.96667 0.98355 1.21756 0.99607 0.97459 0.86074 1.59378 1.17649 1.43239 1.06427 1.22311 0.98920 0.91676 0.98322 0.91148 0.92350 0.96329 0.95907 0.91493 0.91072 0.91609 0.96262 0.87553 0.92859 0.92105 0.94282 0.91496 0.93106 0.91599 0.95153 0.91480 0.92191 0.96211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.61 60.07 0.58 1.05 16 2 N -0.55 -10.08 4.86 -242.69 -1.18 -11.26 16 3 C 0.06 1.00 5.34 -3.67 -0.02 0.98 16 4 C -0.12 -1.91 4.45 -26.95 -0.12 -2.03 16 5 C 0.10 1.84 1.86 -72.40 -0.13 1.71 16 6 H 0.00 0.06 4.88 -51.93 -0.25 -0.20 16 7 C -0.07 -1.43 1.55 -91.72 -0.14 -1.57 16 8 H 0.05 1.19 6.24 -51.92 -0.32 0.87 16 9 C 0.08 1.71 4.23 -3.82 -0.02 1.69 16 10 C 0.02 0.57 1.47 -92.31 -0.14 0.43 16 11 H 0.05 1.13 5.05 -51.93 -0.26 0.87 16 12 C -0.51 -13.71 6.51 -34.44 -0.22 -13.93 16 13 H 0.07 2.07 8.05 -52.49 -0.42 1.65 16 14 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 15 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 16 Si 0.87 22.17 25.84 -169.99 -4.39 17.78 16 17 H -0.27 -6.97 7.11 56.52 0.40 -6.56 16 18 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 19 H -0.26 -6.46 6.13 56.52 0.35 -6.11 16 20 C -0.10 -1.97 4.92 -27.79 -0.14 -2.11 16 21 C -0.12 -2.08 5.33 -29.39 -0.16 -2.24 16 22 C 0.08 1.18 5.33 -4.62 -0.02 1.16 16 23 N -0.54 -9.16 4.54 -241.76 -1.10 -10.26 16 24 C 0.04 0.47 8.42 60.07 0.51 0.98 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.06 0.77 8.07 -51.93 -0.42 0.35 16 27 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.02 0.35 8.04 -51.93 -0.42 -0.06 16 29 H 0.07 0.90 8.06 -51.93 -0.42 0.49 16 30 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 31 H 0.07 0.88 5.98 -51.93 -0.31 0.57 16 32 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 33 H 0.11 2.56 6.67 -51.93 -0.35 2.21 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.06 1.28 7.79 -51.93 -0.40 0.88 16 36 H 0.04 0.78 6.31 -51.93 -0.33 0.45 16 37 H 0.07 1.22 7.53 -51.93 -0.39 0.83 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.86 7.85 -51.93 -0.41 0.45 16 40 H 0.03 0.46 7.48 -51.93 -0.39 0.07 16 41 H 0.07 0.88 7.36 -51.92 -0.38 0.50 16 42 H 0.06 0.70 7.98 -51.93 -0.41 0.29 16 43 H 0.02 0.24 6.88 -51.93 -0.36 -0.12 16 LS Contribution 302.64 15.07 4.56 4.56 Total: -1.00 -29.59 302.64 -8.98 -38.57 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -7.52 Total: -0.91 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -0.13 Total: -11.87 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -1.50 Total: -48.12 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.39 Total: 17.78 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.59 -8.98 -38.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260656020.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.255 kcal (2) G-P(sol) polarization free energy of solvation -29.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds