Wall clock time and date at job start Mon Mar 30 2020 04:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46708 * 111.00162 * 2 1 4 4 C 1.53493 * 110.10523 * 174.02441 * 3 2 1 5 5 C 1.52073 * 108.43493 * 57.08531 * 4 3 2 6 6 H 1.09003 * 101.46107 * 51.36196 * 5 4 3 7 7 C 1.50573 * 111.13582 * 303.72662 * 5 4 3 8 8 H 1.09007 * 107.05807 * 302.32409 * 7 5 4 9 9 C 1.47198 * 111.00150 * 234.68460 * 2 1 3 10 10 C 1.53519 * 114.38712 * 183.85742 * 7 5 4 11 11 H 1.08999 * 109.37800 * 77.47761 * 10 7 5 12 12 C 1.50706 * 109.36987 * 197.23474 * 10 7 5 13 13 H 1.07997 * 120.00216 * 94.68673 * 12 10 7 14 14 C 1.37879 * 119.99588 * 274.67794 * 12 10 7 15 15 N 1.31513 * 119.99793 * 186.02450 * 14 12 10 16 16 Si 1.86797 * 120.00340 * 6.02790 * 14 12 10 17 17 H 1.48509 * 109.47254 * 84.80334 * 16 14 12 18 18 H 1.48495 * 109.47562 * 204.80460 * 16 14 12 19 19 H 1.48505 * 109.47074 * 324.80528 * 16 14 12 20 20 C 1.51399 * 110.06388 * 317.29137 * 10 7 5 21 21 C 1.52501 * 110.24963 * 89.58435 * 20 10 7 22 22 C 1.48050 * 114.46525 * 277.73704 * 21 20 10 23 23 N 1.41139 * 116.22089 * 161.37346 * 5 4 3 24 24 C 1.46903 * 111.00218 * 354.09924 * 23 5 4 25 25 H 1.08999 * 109.47282 * 185.31070 * 1 2 3 26 26 H 1.08998 * 109.47454 * 305.31408 * 1 2 3 27 27 H 1.09004 * 109.46290 * 65.31370 * 1 2 3 28 28 H 1.09002 * 109.36290 * 294.21707 * 3 2 1 29 29 H 1.08998 * 109.36945 * 53.82851 * 3 2 1 30 30 H 1.08996 * 109.64601 * 297.39614 * 4 3 2 31 31 H 1.09005 * 109.63922 * 176.76346 * 4 3 2 32 32 H 1.09004 * 109.62275 * 65.81332 * 9 2 1 33 33 H 1.09006 * 109.62396 * 305.26551 * 9 2 1 34 34 H 0.97001 * 119.99975 * 179.97438 * 15 14 12 35 35 H 1.08997 * 109.34597 * 209.82519 * 20 10 7 36 36 H 1.09006 * 109.34092 * 329.50388 * 20 10 7 37 37 H 1.09000 * 108.48210 * 39.02556 * 21 20 10 38 38 H 1.08999 * 108.48473 * 156.60527 * 21 20 10 39 39 H 1.09003 * 109.45074 * 182.72054 * 22 21 20 40 40 H 1.09000 * 109.45020 * 302.66428 * 22 21 20 41 41 H 1.09007 * 109.46780 * 59.99933 * 24 23 5 42 42 H 1.08997 * 109.47740 * 179.97438 * 24 23 5 43 43 H 1.09002 * 109.47276 * 300.00644 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9949 1.3696 0.0000 4 6 3.5223 1.3484 0.1501 5 6 4.1049 0.5133 -0.9794 6 1 3.6296 0.9650 -1.8502 7 6 3.5158 -0.8724 -0.9897 8 1 3.7193 -1.3136 -0.0139 9 6 1.9966 -0.7944 -1.1213 10 6 4.1204 -1.8104 -2.0440 11 1 5.0903 -2.1669 -1.6972 12 6 3.2011 -2.9862 -2.2528 13 1 2.4743 -2.9683 -3.0514 14 6 3.2882 -4.0850 -1.4245 15 7 2.5706 -5.1577 -1.6774 16 14 4.4253 -4.0499 0.0571 17 1 3.7262 -3.4144 1.2029 18 1 4.8090 -5.4379 0.4197 19 1 5.6448 -3.2695 -0.2732 20 6 4.2955 -1.0739 -3.3551 21 6 5.6674 -0.4101 -3.4085 22 6 5.7445 0.8950 -2.7137 23 7 5.4764 0.7040 -1.2526 24 6 6.0258 1.8028 -0.4471 25 1 -0.3634 -1.0232 0.0951 26 1 -0.3634 0.5940 0.8385 27 1 -0.3632 0.4292 -0.9338 28 1 1.7306 1.8582 -0.9379 29 1 1.5578 1.9246 0.8301 30 1 3.7902 0.9054 1.1092 31 1 3.9103 2.3654 0.0915 32 1 1.7351 -0.3148 -2.0646 33 1 1.5744 -1.7988 -1.0889 34 1 2.6322 -5.9308 -1.0948 35 1 4.2036 -1.7796 -4.1807 36 1 3.5234 -0.3098 -3.4459 37 1 6.3955 -1.0848 -2.9583 38 1 5.9379 -0.2592 -4.4536 39 1 6.7412 1.3169 -2.8433 40 1 5.0048 1.5752 -3.1358 41 1 5.9093 1.5708 0.6116 42 1 7.0839 1.9280 -0.6769 43 1 5.4920 2.7247 -0.6779 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260656020.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:11 Heat of formation + Delta-G solvation = -1.710663 kcal Electronic energy + Delta-G solvation = -20899.867669 eV Core-core repulsion = 18172.179185 eV Total energy + Delta-G solvation = -2727.688484 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.52665 -38.14886 -36.69116 -34.40029 -33.62662 -31.60372 -29.69955 -27.71315 -27.13661 -25.55744 -24.59257 -23.02234 -21.78541 -21.24159 -19.62731 -18.74247 -17.34903 -16.79886 -16.17959 -15.98966 -15.75316 -15.52046 -15.27845 -14.89994 -14.74267 -14.32015 -14.09844 -13.67155 -13.48576 -13.35130 -13.04031 -12.97361 -12.76729 -12.59905 -12.36000 -12.13909 -11.96793 -11.91384 -11.77386 -11.36230 -11.19798 -11.09460 -10.83659 -10.75190 -10.49541 -9.22289 -8.89436 -8.24225 -6.22049 1.35340 1.38168 1.47523 2.38759 2.79345 3.04439 3.12510 3.76472 3.99255 4.02663 4.12175 4.22897 4.31504 4.38221 4.44637 4.51475 4.52911 4.60762 4.64470 4.66460 4.72460 4.81251 4.84503 4.92563 4.97172 5.00822 5.01654 5.09866 5.13401 5.20308 5.31037 5.35670 5.42561 5.49216 5.67852 5.81470 5.87966 6.15718 6.27097 6.33130 6.41247 6.55600 6.82668 7.41156 8.92212 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.011486 C = 0.008585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.230744 B = 2437.121404 C = 3260.531676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.569 5.569 3 C 0.062 3.938 4 C -0.116 4.116 5 C 0.109 3.891 6 H -0.004 1.004 7 C -0.061 4.061 8 H 0.022 0.978 9 C 0.095 3.905 10 C 0.026 3.974 11 H 0.029 0.971 12 C -0.493 4.493 13 H 0.033 0.967 14 C 0.022 3.978 15 N -0.949 5.949 16 Si 0.926 3.074 17 H -0.273 1.273 18 H -0.294 1.294 19 H -0.248 1.248 20 C -0.093 4.093 21 C -0.117 4.117 22 C 0.079 3.921 23 N -0.568 5.568 24 C 0.036 3.964 25 H 0.054 0.946 26 H 0.089 0.911 27 H 0.024 0.976 28 H 0.027 0.973 29 H 0.097 0.903 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.013 0.987 33 H 0.061 0.939 34 H 0.262 0.738 35 H 0.041 0.959 36 H 0.040 0.960 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.038 0.962 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.070 17.711 2.753 18.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.294 5.294 3 C -0.066 4.066 4 C -0.155 4.155 5 C -0.001 4.001 6 H 0.014 0.986 7 C -0.082 4.082 8 H 0.040 0.960 9 C -0.033 4.033 10 C 0.006 3.994 11 H 0.048 0.952 12 C -0.531 4.531 13 H 0.052 0.948 14 C -0.175 4.175 15 N -0.590 5.590 16 Si 0.753 3.247 17 H -0.199 1.199 18 H -0.221 1.221 19 H -0.172 1.172 20 C -0.131 4.131 21 C -0.155 4.155 22 C -0.047 4.047 23 N -0.293 5.293 24 C -0.111 4.111 25 H 0.073 0.927 26 H 0.107 0.893 27 H 0.043 0.957 28 H 0.046 0.954 29 H 0.115 0.885 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.032 0.968 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.116 0.884 40 H 0.056 0.944 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.410 16.936 3.348 17.818 hybrid contribution -0.763 -0.017 -0.431 0.877 sum 3.646 16.919 2.917 17.552 Atomic orbital electron populations 1.22313 0.86477 1.02067 1.00885 1.61766 1.08538 1.14029 1.45074 1.22184 0.95074 0.88542 1.00779 1.21884 0.94628 1.00315 0.98630 1.19411 0.87788 0.94927 0.97979 0.98596 1.20771 0.93524 0.94981 0.98918 0.95958 1.21814 0.95104 0.96867 0.89494 1.18942 0.95154 0.92478 0.92819 0.95240 1.21245 1.18041 1.00055 1.13777 0.94836 1.25658 0.96979 0.94954 0.99906 1.70046 1.44124 1.05064 1.39815 0.86076 0.81225 0.76453 0.80992 1.19911 1.22064 1.17237 1.21052 0.96512 0.97740 0.97777 1.20661 0.97033 0.97310 1.00446 1.21782 1.01626 0.96228 0.85053 1.59286 1.16710 1.45528 1.07742 1.22385 1.00009 0.91022 0.97705 0.92701 0.89263 0.95694 0.95442 0.88525 0.91734 0.88294 0.96840 0.92015 0.92923 0.93971 0.94126 0.92883 0.90457 0.88438 0.94393 0.91483 0.90386 0.94420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 9.61 127.69 1.23 2.13 16 2 N -0.57 -20.15 4.86 -921.75 -4.48 -24.63 16 3 C 0.06 1.74 5.34 86.51 0.46 2.20 16 4 C -0.12 -3.23 4.45 30.45 0.14 -3.10 16 5 C 0.11 3.72 1.86 44.87 0.08 3.80 16 6 H 0.00 -0.14 4.88 -2.39 -0.01 -0.15 16 7 C -0.06 -2.65 1.55 -11.51 -0.02 -2.66 16 8 H 0.02 1.06 6.24 -2.38 -0.01 1.04 16 9 C 0.10 4.07 4.23 86.14 0.36 4.43 16 10 C 0.03 1.21 1.47 -11.89 -0.02 1.19 16 11 H 0.03 1.49 5.05 -2.39 -0.01 1.48 16 12 C -0.49 -28.12 6.51 25.60 0.17 -27.95 16 13 H 0.03 2.11 8.05 -2.91 -0.02 2.09 16 14 C 0.02 1.30 5.47 84.66 0.46 1.76 16 15 N -0.95 -60.29 13.96 21.45 0.30 -59.99 16 16 Si 0.93 47.27 25.84 68.60 1.77 49.04 16 17 H -0.27 -13.87 7.11 99.48 0.71 -13.17 16 18 H -0.29 -14.80 7.11 99.48 0.71 -14.10 16 19 H -0.25 -12.14 6.13 99.48 0.61 -11.53 16 20 C -0.09 -3.78 4.92 29.91 0.15 -3.64 16 21 C -0.12 -3.74 5.33 28.87 0.15 -3.58 16 22 C 0.08 2.12 5.33 84.19 0.45 2.57 16 23 N -0.57 -17.32 4.54 -918.79 -4.18 -21.49 16 24 C 0.04 0.78 8.42 127.69 1.07 1.86 16 25 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.09 2.10 8.07 -2.39 -0.02 2.08 16 27 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.03 0.76 8.04 -2.39 -0.02 0.74 16 29 H 0.10 2.17 8.06 -2.39 -0.02 2.15 16 30 H 0.06 1.90 8.07 -2.39 -0.02 1.88 16 31 H 0.10 2.13 5.98 -2.38 -0.01 2.11 16 32 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 33 H 0.06 3.16 6.67 -2.38 -0.02 3.14 16 34 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 35 H 0.04 1.82 7.79 -2.39 -0.02 1.80 16 36 H 0.04 1.61 6.31 -2.38 -0.02 1.60 16 37 H 0.05 1.85 7.53 -2.39 -0.02 1.83 16 38 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.10 2.05 7.85 -2.39 -0.02 2.03 16 40 H 0.04 0.99 7.48 -2.39 -0.02 0.97 16 41 H 0.07 1.48 7.36 -2.38 -0.02 1.46 16 42 H 0.08 1.44 7.98 -2.39 -0.02 1.42 16 43 H 0.04 0.71 6.88 -2.39 -0.02 0.69 16 Total: -1.00 -67.41 302.64 -1.03 -68.44 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 0.87 Total: 9.62 kcal Atomic # 6 Polarization: -25.68 SS G_CDS: 4.69 Total: -20.99 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -8.35 Total: -106.12 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.77 Total: 49.04 kcal Total: -67.41 -1.03 -68.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260656020.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.727 kcal (2) G-P(sol) polarization free energy of solvation -67.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds