Wall clock time and date at job start Mon Mar 30 2020 04:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46973 * 110.99969 * 2 1 4 4 C 1.52951 * 109.21678 * 172.51618 * 3 2 1 5 5 C 1.53400 * 109.55100 * 59.70451 * 4 3 2 6 6 H 1.09000 * 108.21869 * 64.62970 * 5 4 3 7 7 C 1.50273 * 110.57893 * 306.13719 * 5 4 3 8 8 H 1.08999 * 103.11288 * 160.84357 * 7 5 4 9 9 C 1.46909 * 111.00224 * 236.52959 * 2 1 3 10 10 C 1.48168 * 119.70804 * 274.58875 * 7 5 4 11 11 H 1.09005 * 108.92133 * 34.22152 * 10 7 5 12 12 C 1.50694 * 108.92500 * 152.87785 * 10 7 5 13 13 H 1.08000 * 120.00233 * 65.08742 * 12 10 7 14 14 C 1.37879 * 120.00025 * 245.07948 * 12 10 7 15 15 N 1.31518 * 120.00038 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 120.00204 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46808 * 270.00228 * 16 14 12 18 18 H 1.48495 * 109.47034 * 30.00243 * 16 14 12 19 19 H 1.48501 * 109.47151 * 150.00424 * 16 14 12 20 20 C 1.53879 * 112.26571 * 273.60011 * 10 7 5 21 21 C 1.48349 * 108.79558 * 73.02295 * 20 10 7 22 22 C 1.52370 * 113.90805 * 297.73439 * 21 20 10 23 23 N 1.44715 * 110.62041 * 84.94749 * 22 21 20 24 24 C 1.46898 * 111.00186 * 142.13938 * 23 22 21 25 25 H 1.09002 * 109.46748 * 63.95700 * 1 2 3 26 26 H 1.09006 * 109.47037 * 183.95184 * 1 2 3 27 27 H 1.08999 * 109.47596 * 303.95429 * 1 2 3 28 28 H 1.08995 * 109.51251 * 52.59189 * 3 2 1 29 29 H 1.08999 * 109.55189 * 292.46679 * 3 2 1 30 30 H 1.09007 * 109.45640 * 299.67802 * 4 3 2 31 31 H 1.08995 * 109.45623 * 179.73044 * 4 3 2 32 32 H 1.08992 * 109.37892 * 63.99756 * 9 2 1 33 33 H 1.08994 * 109.38305 * 304.33374 * 9 2 1 34 34 H 0.97004 * 120.00188 * 179.97438 * 15 14 12 35 35 H 1.08993 * 109.58363 * 192.82049 * 20 10 7 36 36 H 1.09004 * 109.58071 * 313.23074 * 20 10 7 37 37 H 1.08997 * 108.59969 * 176.59070 * 21 20 10 38 38 H 1.09002 * 108.59880 * 58.87549 * 21 20 10 39 39 H 1.09001 * 109.24641 * 324.65418 * 22 21 20 40 40 H 1.09001 * 109.25085 * 205.24261 * 22 21 20 41 41 H 1.09000 * 109.47564 * 184.73543 * 24 23 22 42 42 H 1.09003 * 109.46890 * 304.73865 * 24 23 22 43 43 H 1.09006 * 109.47537 * 64.73214 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3721 0.0000 4 6 3.5130 1.3289 0.1881 5 6 4.1494 0.5280 -0.9550 6 1 3.9738 1.0657 -1.8868 7 6 3.5146 -0.8295 -1.0661 8 1 3.7774 -1.1434 -2.0763 9 6 1.9955 -0.7564 -1.1441 10 6 4.0120 -1.9437 -0.2256 11 1 4.3294 -1.5451 0.7381 12 6 2.8910 -2.9257 -0.0024 13 1 2.4806 -3.4755 -0.8365 14 6 2.3893 -3.1225 1.2667 15 7 2.8888 -2.4528 2.2824 16 14 1.0001 -4.3404 1.5435 17 1 -0.3039 -3.6436 1.4049 18 1 1.0889 -5.4294 0.5379 19 1 1.1111 -4.9162 2.9078 20 6 5.1979 -2.6790 -0.8743 21 6 6.4005 -1.8145 -0.7896 22 6 6.2677 -0.4965 -1.5425 23 7 5.6151 0.4979 -0.7181 24 6 6.2091 1.8254 -0.9250 25 1 -0.3633 0.4512 -0.9234 26 1 -0.3633 -1.0253 0.0708 27 1 -0.3634 0.5740 0.8524 28 1 1.5435 1.9356 0.8161 29 1 1.7600 1.8533 -0.9492 30 1 3.7474 0.8522 1.1400 31 1 3.9084 2.3446 0.1839 32 1 1.7043 -0.2608 -2.0701 33 1 1.5838 -1.7655 -1.1309 34 1 2.5356 -2.5910 3.1753 35 1 5.3819 -3.6138 -0.3449 36 1 4.9707 -2.8875 -1.9198 37 1 7.2515 -2.3620 -1.1947 38 1 6.5989 -1.5967 0.2599 39 1 5.6794 -0.6565 -2.4460 40 1 7.2596 -0.1391 -1.8190 41 1 5.7579 2.5372 -0.2336 42 1 7.2830 1.7750 -0.7451 43 1 6.0272 2.1493 -1.9498 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260656024.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:14 Heat of formation + Delta-G solvation = 19.727507 kcal Electronic energy + Delta-G solvation = -21040.286845 eV Core-core repulsion = 18313.527990 eV Total energy + Delta-G solvation = -2726.758855 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.58545 -36.56438 -34.71087 -32.38111 -31.58114 -30.10528 -27.59151 -26.14955 -25.20354 -23.56870 -23.07417 -21.24219 -20.50346 -19.47112 -17.42976 -16.24821 -15.80039 -14.76404 -14.49491 -14.38797 -14.13131 -13.97787 -13.50048 -13.08081 -12.58239 -12.57689 -12.31652 -12.19152 -11.80426 -11.63405 -11.48520 -11.09411 -10.95457 -10.80766 -10.67325 -10.46238 -10.24014 -10.16948 -9.96962 -9.73740 -9.51086 -9.18456 -8.48663 -8.38069 -8.19219 -7.62364 -7.28053 -5.72831 -3.71180 3.41257 3.48895 3.50796 4.38909 4.62196 4.80995 5.35142 5.45690 5.57192 5.60963 5.66371 5.75124 5.80570 5.87364 5.91318 5.94858 6.03538 6.07955 6.10666 6.22867 6.29472 6.30222 6.37927 6.47832 6.53340 6.64523 6.69749 6.73836 6.88333 7.07797 7.16250 7.27183 7.27696 7.50413 7.71577 7.81110 7.98627 8.03228 8.06223 8.15439 8.32587 8.72019 9.37346 9.86466 11.36326 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020389 B = 0.010624 C = 0.007965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.938593 B = 2634.989577 C = 3514.415885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.504 5.504 3 C 0.061 3.939 4 C -0.104 4.104 5 C 0.109 3.891 6 H 0.013 0.987 7 C -0.044 4.044 8 H 0.011 0.989 9 C 0.082 3.918 10 C 0.045 3.955 11 H 0.080 0.920 12 C -0.507 4.507 13 H 0.043 0.957 14 C 0.086 3.914 15 N -0.872 5.872 16 Si 0.870 3.130 17 H -0.283 1.283 18 H -0.279 1.279 19 H -0.290 1.290 20 C -0.105 4.105 21 C -0.111 4.111 22 C 0.066 3.934 23 N -0.533 5.533 24 C 0.030 3.970 25 H 0.007 0.993 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.012 0.988 30 H 0.089 0.911 31 H 0.047 0.953 32 H -0.009 1.009 33 H 0.107 0.893 34 H 0.255 0.745 35 H 0.056 0.944 36 H 0.029 0.971 37 H 0.037 0.963 38 H 0.067 0.933 39 H 0.032 0.968 40 H 0.051 0.949 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.102 7.346 -5.880 9.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.227 5.227 3 C -0.068 4.068 4 C -0.142 4.142 5 C 0.001 3.999 6 H 0.031 0.969 7 C -0.064 4.064 8 H 0.030 0.970 9 C -0.046 4.046 10 C 0.026 3.974 11 H 0.098 0.902 12 C -0.545 4.545 13 H 0.061 0.939 14 C -0.117 4.117 15 N -0.509 5.509 16 Si 0.699 3.301 17 H -0.209 1.209 18 H -0.205 1.205 19 H -0.216 1.216 20 C -0.143 4.143 21 C -0.149 4.149 22 C -0.062 4.062 23 N -0.257 5.257 24 C -0.119 4.119 25 H 0.025 0.975 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.030 0.970 30 H 0.108 0.892 31 H 0.066 0.934 32 H 0.009 0.991 33 H 0.125 0.875 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.051 0.949 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 2.342 6.999 -4.785 8.796 hybrid contribution -1.283 0.040 -1.515 1.986 sum 1.059 7.039 -6.300 9.505 Atomic orbital electron populations 1.22269 0.89184 1.01766 0.98448 1.62015 1.05511 1.11407 1.43815 1.22036 0.95970 0.90526 0.98307 1.21615 0.93310 0.98049 1.01195 1.21374 0.86019 0.97362 0.95131 0.96871 1.19585 0.93549 0.93558 0.99673 0.97038 1.22263 0.95307 0.99736 0.87245 1.17871 0.91974 0.90616 0.96912 0.90199 1.20780 1.18130 1.22928 0.92671 0.93924 1.24688 0.95683 0.94850 0.96440 1.69878 1.41361 1.40545 0.99132 0.86984 0.83882 0.82029 0.77219 1.20924 1.20464 1.21643 1.21105 0.96003 0.98440 0.98737 1.20721 0.98451 0.94481 1.01257 1.21515 0.96813 0.93401 0.94515 1.61470 1.03486 1.04554 1.56232 1.22412 0.99459 0.91414 0.98602 0.97466 0.91613 0.92554 0.91826 0.96971 0.89200 0.93425 0.99116 0.87510 0.93522 0.92506 0.95193 0.94443 0.91445 0.94948 0.93018 0.91549 0.91963 0.96805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.60 60.06 0.58 1.16 16 2 N -0.50 -10.47 4.95 -243.35 -1.20 -11.67 16 3 C 0.06 1.10 5.45 -3.81 -0.02 1.08 16 4 C -0.10 -1.93 5.32 -26.55 -0.14 -2.07 16 5 C 0.11 2.08 1.70 -67.98 -0.12 1.96 16 6 H 0.01 0.25 7.95 -51.93 -0.41 -0.16 16 7 C -0.04 -0.95 1.32 -94.69 -0.12 -1.07 16 8 H 0.01 0.24 5.92 -51.93 -0.31 -0.06 16 9 C 0.08 1.75 4.42 -4.18 -0.02 1.73 16 10 C 0.04 1.08 2.03 -93.67 -0.19 0.89 16 11 H 0.08 2.22 6.68 -51.93 -0.35 1.87 16 12 C -0.51 -13.29 5.60 -34.44 -0.19 -13.49 16 13 H 0.04 1.13 7.41 -52.49 -0.39 0.74 16 14 C 0.09 2.34 5.46 -17.82 -0.10 2.24 16 15 N -0.87 -24.79 12.59 55.43 0.70 -24.09 16 16 Si 0.87 21.18 29.54 -169.99 -5.02 16.16 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 C -0.11 -2.27 4.93 -28.54 -0.14 -2.41 16 21 C -0.11 -2.08 5.29 -29.32 -0.16 -2.24 16 22 C 0.07 1.14 5.21 -5.32 -0.03 1.11 16 23 N -0.53 -9.56 4.32 -237.19 -1.02 -10.59 16 24 C 0.03 0.42 9.12 60.06 0.55 0.97 16 25 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 26 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 28 H 0.06 1.07 8.06 -51.93 -0.42 0.66 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 31 H 0.05 0.77 6.57 -51.93 -0.34 0.42 16 32 H -0.01 -0.18 8.14 -51.93 -0.42 -0.60 16 33 H 0.11 2.49 5.58 -51.93 -0.29 2.20 16 34 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.06 1.29 8.06 -51.93 -0.42 0.87 16 36 H 0.03 0.62 7.71 -51.93 -0.40 0.22 16 37 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 1.38 7.99 -51.93 -0.42 0.97 16 39 H 0.03 0.58 6.55 -51.93 -0.34 0.24 16 40 H 0.05 0.77 7.49 -51.93 -0.39 0.38 16 41 H 0.07 0.91 6.51 -51.93 -0.34 0.57 16 42 H 0.06 0.80 7.93 -51.93 -0.41 0.39 16 43 H 0.01 0.19 8.08 -51.93 -0.42 -0.23 16 LS Contribution 311.91 15.07 4.70 4.70 Total: -1.00 -27.69 311.91 -9.68 -37.37 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -7.73 Total: -1.75 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -0.10 Total: -10.14 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: -1.53 Total: -46.35 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.69 -9.68 -37.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260656024.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.097 kcal (2) G-P(sol) polarization free energy of solvation -27.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds