Wall clock time and date at job start Mon Mar 30 2020 04:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46973 * 110.99969 * 2 1 4 4 C 1.52951 * 109.21678 * 172.51618 * 3 2 1 5 5 C 1.53400 * 109.55100 * 59.70451 * 4 3 2 6 6 H 1.09000 * 108.21869 * 64.62970 * 5 4 3 7 7 C 1.50273 * 110.57893 * 306.13719 * 5 4 3 8 8 H 1.08999 * 103.11288 * 160.84357 * 7 5 4 9 9 C 1.46909 * 111.00224 * 236.52959 * 2 1 3 10 10 C 1.48168 * 119.70804 * 274.58875 * 7 5 4 11 11 H 1.09005 * 108.92133 * 34.22152 * 10 7 5 12 12 C 1.50694 * 108.92500 * 152.87785 * 10 7 5 13 13 H 1.08000 * 120.00233 * 65.08742 * 12 10 7 14 14 C 1.37879 * 120.00025 * 245.07948 * 12 10 7 15 15 N 1.31518 * 120.00038 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 120.00204 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46808 * 270.00228 * 16 14 12 18 18 H 1.48495 * 109.47034 * 30.00243 * 16 14 12 19 19 H 1.48501 * 109.47151 * 150.00424 * 16 14 12 20 20 C 1.53879 * 112.26571 * 273.60011 * 10 7 5 21 21 C 1.48349 * 108.79558 * 73.02295 * 20 10 7 22 22 C 1.52370 * 113.90805 * 297.73439 * 21 20 10 23 23 N 1.44715 * 110.62041 * 84.94749 * 22 21 20 24 24 C 1.46898 * 111.00186 * 142.13938 * 23 22 21 25 25 H 1.09002 * 109.46748 * 63.95700 * 1 2 3 26 26 H 1.09006 * 109.47037 * 183.95184 * 1 2 3 27 27 H 1.08999 * 109.47596 * 303.95429 * 1 2 3 28 28 H 1.08995 * 109.51251 * 52.59189 * 3 2 1 29 29 H 1.08999 * 109.55189 * 292.46679 * 3 2 1 30 30 H 1.09007 * 109.45640 * 299.67802 * 4 3 2 31 31 H 1.08995 * 109.45623 * 179.73044 * 4 3 2 32 32 H 1.08992 * 109.37892 * 63.99756 * 9 2 1 33 33 H 1.08994 * 109.38305 * 304.33374 * 9 2 1 34 34 H 0.97004 * 120.00188 * 179.97438 * 15 14 12 35 35 H 1.08993 * 109.58363 * 192.82049 * 20 10 7 36 36 H 1.09004 * 109.58071 * 313.23074 * 20 10 7 37 37 H 1.08997 * 108.59969 * 176.59070 * 21 20 10 38 38 H 1.09002 * 108.59880 * 58.87549 * 21 20 10 39 39 H 1.09001 * 109.24641 * 324.65418 * 22 21 20 40 40 H 1.09001 * 109.25085 * 205.24261 * 22 21 20 41 41 H 1.09000 * 109.47564 * 184.73543 * 24 23 22 42 42 H 1.09003 * 109.46890 * 304.73865 * 24 23 22 43 43 H 1.09006 * 109.47537 * 64.73214 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3721 0.0000 4 6 3.5130 1.3289 0.1881 5 6 4.1494 0.5280 -0.9550 6 1 3.9738 1.0657 -1.8868 7 6 3.5146 -0.8295 -1.0661 8 1 3.7774 -1.1434 -2.0763 9 6 1.9955 -0.7564 -1.1441 10 6 4.0120 -1.9437 -0.2256 11 1 4.3294 -1.5451 0.7381 12 6 2.8910 -2.9257 -0.0024 13 1 2.4806 -3.4755 -0.8365 14 6 2.3893 -3.1225 1.2667 15 7 2.8888 -2.4528 2.2824 16 14 1.0001 -4.3404 1.5435 17 1 -0.3039 -3.6436 1.4049 18 1 1.0889 -5.4294 0.5379 19 1 1.1111 -4.9162 2.9078 20 6 5.1979 -2.6790 -0.8743 21 6 6.4005 -1.8145 -0.7896 22 6 6.2677 -0.4965 -1.5425 23 7 5.6151 0.4979 -0.7181 24 6 6.2091 1.8254 -0.9250 25 1 -0.3633 0.4512 -0.9234 26 1 -0.3633 -1.0253 0.0708 27 1 -0.3634 0.5740 0.8524 28 1 1.5435 1.9356 0.8161 29 1 1.7600 1.8533 -0.9492 30 1 3.7474 0.8522 1.1400 31 1 3.9084 2.3446 0.1839 32 1 1.7043 -0.2608 -2.0701 33 1 1.5838 -1.7655 -1.1309 34 1 2.5356 -2.5910 3.1753 35 1 5.3819 -3.6138 -0.3449 36 1 4.9707 -2.8875 -1.9198 37 1 7.2515 -2.3620 -1.1947 38 1 6.5989 -1.5967 0.2599 39 1 5.6794 -0.6565 -2.4460 40 1 7.2596 -0.1391 -1.8190 41 1 5.7579 2.5372 -0.2336 42 1 7.2830 1.7750 -0.7451 43 1 6.0272 2.1493 -1.9498 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260656024.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:14 Heat of formation + Delta-G solvation = 1.942535 kcal Electronic energy + Delta-G solvation = -21041.058060 eV Core-core repulsion = 18313.527990 eV Total energy + Delta-G solvation = -2727.530069 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.14039 -38.04023 -36.39971 -34.07702 -33.36456 -31.66673 -29.18735 -27.60308 -26.89057 -25.25669 -24.57871 -22.84081 -22.10400 -21.00997 -19.14427 -18.15328 -17.33775 -16.43171 -16.13429 -15.96659 -15.68920 -15.55265 -14.91501 -14.58609 -14.28180 -14.04467 -13.90711 -13.84929 -13.21334 -13.14586 -12.98630 -12.82856 -12.61617 -12.49204 -12.36699 -12.05352 -12.02155 -11.81288 -11.62606 -11.26937 -11.13301 -10.88984 -10.42699 -10.28681 -10.19171 -8.97949 -8.80119 -7.82760 -5.84240 1.43819 1.46903 1.52723 2.57989 3.06029 3.30685 3.50372 3.85063 4.11536 4.18463 4.24125 4.33181 4.38091 4.47007 4.53215 4.57593 4.62225 4.67179 4.75844 4.78872 4.84561 4.88091 4.91707 5.04741 5.05185 5.10940 5.16222 5.23073 5.24049 5.42608 5.47037 5.60411 5.66683 5.73003 5.87747 6.20515 6.25311 6.39914 6.47804 6.52914 6.56444 6.69719 7.30579 7.74698 9.25592 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020389 B = 0.010624 C = 0.007965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.938593 B = 2634.989577 C = 3514.415885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.536 5.536 3 C 0.062 3.938 4 C -0.096 4.096 5 C 0.111 3.889 6 H 0.026 0.974 7 C -0.044 4.044 8 H 0.007 0.993 9 C 0.087 3.913 10 C 0.052 3.948 11 H 0.039 0.961 12 C -0.505 4.505 13 H 0.034 0.966 14 C 0.047 3.953 15 N -0.902 5.902 16 Si 0.918 3.082 17 H -0.279 1.279 18 H -0.276 1.276 19 H -0.293 1.293 20 C -0.102 4.102 21 C -0.106 4.106 22 C 0.069 3.931 23 N -0.555 5.555 24 C 0.030 3.970 25 H 0.029 0.971 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.032 0.968 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.007 0.993 33 H 0.078 0.922 34 H 0.250 0.750 35 H 0.035 0.965 36 H 0.037 0.963 37 H 0.063 0.937 38 H 0.044 0.956 39 H 0.028 0.972 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.438 8.928 -7.321 11.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.260 5.260 3 C -0.066 4.066 4 C -0.134 4.134 5 C 0.003 3.997 6 H 0.044 0.956 7 C -0.063 4.063 8 H 0.026 0.974 9 C -0.041 4.041 10 C 0.033 3.967 11 H 0.058 0.942 12 C -0.543 4.543 13 H 0.053 0.947 14 C -0.153 4.153 15 N -0.541 5.541 16 Si 0.746 3.254 17 H -0.205 1.205 18 H -0.201 1.201 19 H -0.220 1.220 20 C -0.140 4.140 21 C -0.144 4.144 22 C -0.059 4.059 23 N -0.279 5.279 24 C -0.117 4.117 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.025 0.975 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 2.673 8.582 -6.240 10.942 hybrid contribution -1.370 -0.473 -1.083 1.809 sum 1.304 8.110 -7.323 11.004 Atomic orbital electron populations 1.22234 0.87906 1.01053 1.00129 1.61938 1.07025 1.13128 1.43895 1.22069 0.95508 0.89330 0.99719 1.21531 0.93964 0.99071 0.98807 1.21238 0.87019 0.95654 0.95743 0.95618 1.19487 0.94068 0.94397 0.98373 0.97433 1.22048 0.95082 0.98631 0.88362 1.17759 0.92038 0.91163 0.95768 0.94243 1.21018 1.18301 1.22741 0.92260 0.94738 1.25168 0.97481 0.96245 0.96377 1.70023 1.42697 1.42201 0.99161 0.86215 0.81972 0.80462 0.76760 1.20480 1.20143 1.21967 1.20996 0.96646 0.97927 0.98410 1.20632 0.97771 0.95557 1.00450 1.21480 0.98355 0.92378 0.93669 1.61417 1.02879 1.06628 1.56965 1.22479 1.00247 0.89476 0.99539 0.95252 0.93525 0.91272 0.90637 0.95032 0.93394 0.90531 0.97477 0.90369 0.94070 0.94627 0.94446 0.91823 0.93710 0.95332 0.89931 0.91083 0.90312 0.95436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.24 9.60 127.69 1.23 2.46 16 2 N -0.54 -21.89 4.95 -923.81 -4.57 -26.46 16 3 C 0.06 2.13 5.45 86.27 0.47 2.60 16 4 C -0.10 -3.42 5.32 30.71 0.16 -3.26 16 5 C 0.11 4.06 1.70 43.86 0.07 4.14 16 6 H 0.03 0.89 7.95 -2.39 -0.02 0.87 16 7 C -0.04 -1.87 1.32 -13.43 -0.02 -1.89 16 8 H 0.01 0.31 5.92 -2.39 -0.01 0.29 16 9 C 0.09 3.66 4.42 86.06 0.38 4.04 16 10 C 0.05 2.53 2.03 -12.77 -0.03 2.51 16 11 H 0.04 2.27 6.68 -2.38 -0.02 2.25 16 12 C -0.50 -27.15 5.60 25.60 0.14 -27.00 16 13 H 0.03 1.88 7.41 -2.91 -0.02 1.85 16 14 C 0.05 2.61 5.46 84.65 0.46 3.07 16 15 N -0.90 -52.94 12.59 21.45 0.27 -52.67 16 16 Si 0.92 44.37 29.54 68.60 2.03 46.39 16 17 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 18 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 19 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 20 C -0.10 -4.45 4.93 29.42 0.15 -4.30 16 21 C -0.11 -3.89 5.29 28.92 0.15 -3.73 16 22 C 0.07 2.23 5.21 86.50 0.45 2.68 16 23 N -0.55 -18.76 4.32 -904.33 -3.91 -22.67 16 24 C 0.03 0.76 9.12 127.69 1.16 1.93 16 25 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.07 2.21 8.08 -2.39 -0.02 2.19 16 28 H 0.08 2.39 8.06 -2.39 -0.02 2.37 16 29 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.08 2.26 6.57 -2.39 -0.02 2.24 16 32 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.08 3.71 5.58 -2.39 -0.01 3.69 16 34 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 35 H 0.03 1.65 8.06 -2.39 -0.02 1.63 16 36 H 0.04 1.54 7.71 -2.38 -0.02 1.53 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.04 1.84 7.99 -2.39 -0.02 1.82 16 39 H 0.03 0.94 6.55 -2.39 -0.02 0.93 16 40 H 0.08 2.15 7.49 -2.39 -0.02 2.13 16 41 H 0.07 1.72 6.51 -2.39 -0.02 1.70 16 42 H 0.08 1.73 7.93 -2.39 -0.02 1.71 16 43 H 0.03 0.63 8.08 -2.38 -0.02 0.61 16 Total: -1.00 -60.82 311.91 -0.44 -61.26 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 0.95 Total: 10.89 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 4.79 Total: -16.75 kcal Atomic # 7 Polarization: -93.59 SS G_CDS: -8.21 Total: -101.80 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -60.82 -0.44 -61.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260656024.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.207 kcal (2) G-P(sol) polarization free energy of solvation -60.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds