Wall clock time and date at job start Mon Mar 30 2020 04:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47024 * 111.19516 * 2 1 4 4 C 1.53285 * 110.01147 * 174.25867 * 3 2 1 5 5 C 1.52814 * 108.69802 * 57.96579 * 4 3 2 6 6 H 1.09003 * 104.63524 * 56.12016 * 5 4 3 7 7 C 1.50942 * 110.12129 * 302.99186 * 5 4 3 8 8 H 1.08999 * 110.03692 * 297.23969 * 7 5 4 9 9 C 1.47102 * 110.99838 * 235.27597 * 2 1 3 10 10 C 1.54423 * 107.73222 * 177.77926 * 7 5 4 11 11 H 1.08997 * 110.34265 * 312.97349 * 10 7 5 12 12 C 1.50710 * 110.33458 * 190.84125 * 10 7 5 13 13 H 1.07993 * 119.99780 * 0.02562 * 12 10 7 14 14 C 1.37876 * 119.99465 * 180.02562 * 12 10 7 15 15 N 1.31514 * 120.00675 * 359.97438 * 14 12 10 16 16 Si 1.86807 * 119.99713 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.46667 * 59.99868 * 16 14 12 18 18 H 1.48498 * 109.47235 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47029 * 300.00167 * 16 14 12 20 20 C 1.54800 * 104.94196 * 71.99131 * 10 7 5 21 21 C 1.52552 * 108.16265 * 252.37558 * 20 10 7 22 22 C 1.54911 * 109.89216 * 57.26624 * 21 20 10 23 23 N 1.44399 * 112.41187 * 170.41399 * 5 4 3 24 24 C 1.46904 * 110.99879 * 335.66605 * 23 5 4 25 25 H 1.08997 * 109.46974 * 184.72256 * 1 2 3 26 26 H 1.08999 * 109.46444 * 304.72713 * 1 2 3 27 27 H 1.09002 * 109.46685 * 64.72218 * 1 2 3 28 28 H 1.09003 * 109.34845 * 54.09524 * 3 2 1 29 29 H 1.09001 * 109.28046 * 294.37871 * 3 2 1 30 30 H 1.09008 * 109.59879 * 298.20484 * 4 3 2 31 31 H 1.08998 * 109.60255 * 177.73416 * 4 3 2 32 32 H 1.09002 * 109.58143 * 65.66809 * 9 2 1 33 33 H 1.09001 * 109.57826 * 305.40405 * 9 2 1 34 34 H 0.96992 * 120.00393 * 180.02562 * 15 14 12 35 35 H 1.08992 * 109.72751 * 12.03868 * 20 10 7 36 36 H 1.09000 * 109.73040 * 132.66429 * 20 10 7 37 37 H 1.09000 * 109.39855 * 177.39924 * 21 20 10 38 38 H 1.09003 * 109.39883 * 297.13530 * 21 20 10 39 39 H 1.09008 * 109.57185 * 149.52040 * 22 21 20 40 40 H 1.08992 * 109.57643 * 269.89184 * 22 21 20 41 41 H 1.08994 * 109.46795 * 296.84460 * 24 23 5 42 42 H 1.08996 * 109.47438 * 56.84353 * 24 23 5 43 43 H 1.09001 * 109.47005 * 176.84350 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0006 1.3708 0.0000 4 6 3.5264 1.3417 0.1441 5 6 4.1114 0.5209 -1.0045 6 1 3.7350 1.0027 -1.9069 7 6 3.5179 -0.8669 -1.0058 8 1 3.7821 -1.3870 -0.0850 9 6 1.9962 -0.7823 -1.1287 10 6 4.1020 -1.6271 -2.2165 11 1 4.0516 -1.0085 -3.1125 12 6 3.3583 -2.9201 -2.4314 13 1 2.5432 -3.1896 -1.7762 14 6 3.7185 -3.7589 -3.4647 15 7 4.7108 -3.4306 -4.2629 16 14 2.7972 -5.3620 -3.7308 17 1 1.3634 -5.0722 -3.9871 18 1 3.3736 -6.0765 -4.8980 19 1 2.9215 -6.2114 -2.5190 20 6 5.5756 -1.9108 -1.8365 21 6 6.4668 -1.0002 -2.6755 22 6 6.0776 0.4806 -2.4402 23 7 5.5500 0.6222 -1.0766 24 6 6.0219 1.8674 -0.4562 25 1 -0.3633 -1.0242 0.0846 26 1 -0.3632 0.5854 0.8446 27 1 -0.3633 0.4388 -0.9293 28 1 1.5688 1.9256 0.8331 29 1 1.7348 1.8599 -0.9371 30 1 3.7951 0.8826 1.0955 31 1 3.9170 2.3585 0.1029 32 1 1.7320 -0.2938 -2.0667 33 1 1.5716 -1.7860 -1.1074 34 1 4.9639 -4.0205 -4.9900 35 1 5.7293 -1.7019 -0.7779 36 1 5.8149 -2.9537 -2.0442 37 1 7.5081 -1.1506 -2.3909 38 1 6.3424 -1.2441 -3.7306 39 1 6.9577 1.1127 -2.5587 40 1 5.3140 0.7762 -3.1596 41 1 5.6299 2.7204 -1.0100 42 1 5.6744 1.9135 0.5759 43 1 7.1114 1.8921 -0.4742 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260656028.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:17 Heat of formation + Delta-G solvation = 14.189685 kcal Electronic energy + Delta-G solvation = -20662.736216 eV Core-core repulsion = 17935.737223 eV Total energy + Delta-G solvation = -2726.998993 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.72665 -36.71405 -34.56614 -32.29904 -31.62308 -30.05523 -27.30945 -26.40502 -25.26480 -24.00128 -23.03741 -21.05986 -20.33488 -19.10201 -18.63752 -16.13154 -15.79188 -14.75552 -14.64213 -14.52855 -14.46348 -14.21019 -13.75914 -13.01048 -12.88442 -12.51322 -12.36574 -12.06905 -11.81409 -11.71210 -11.40822 -11.16873 -10.95019 -10.84764 -10.73905 -10.70702 -10.43359 -10.31021 -10.06110 -9.86147 -9.41784 -9.28260 -8.63504 -8.52064 -8.21186 -7.89725 -7.47694 -5.89835 -3.92512 3.36721 3.41533 3.44430 4.30549 4.38114 4.51680 5.11947 5.37040 5.42009 5.43288 5.56105 5.58752 5.68357 5.70461 5.75424 5.84233 5.91356 6.05289 6.07577 6.09515 6.16122 6.19463 6.23871 6.28894 6.46800 6.52079 6.69254 6.81757 6.86519 6.93104 7.10363 7.22712 7.47183 7.50659 7.62214 7.69703 7.79482 7.84211 7.94665 8.07033 8.19725 8.60223 9.10975 9.70470 11.18155 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018236 B = 0.009657 C = 0.006588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.086320 B = 2898.760565 C = 4249.001896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.551 5.551 3 C 0.062 3.938 4 C -0.122 4.122 5 C 0.109 3.891 6 H 0.008 0.992 7 C -0.066 4.066 8 H 0.069 0.931 9 C 0.074 3.926 10 C 0.062 3.938 11 H 0.025 0.975 12 C -0.511 4.511 13 H 0.055 0.945 14 C 0.064 3.936 15 N -0.885 5.885 16 Si 0.883 3.117 17 H -0.280 1.280 18 H -0.290 1.290 19 H -0.278 1.278 20 C -0.085 4.085 21 C -0.102 4.102 22 C 0.068 3.932 23 N -0.541 5.541 24 C 0.032 3.968 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.019 0.981 28 H 0.066 0.934 29 H 0.024 0.976 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.025 0.975 33 H 0.089 0.911 34 H 0.257 0.743 35 H 0.042 0.958 36 H 0.056 0.944 37 H 0.032 0.968 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.037 0.963 41 H 0.014 0.986 42 H 0.067 0.933 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.625 9.882 6.347 11.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.275 5.275 3 C -0.067 4.067 4 C -0.160 4.160 5 C 0.000 4.000 6 H 0.026 0.974 7 C -0.085 4.085 8 H 0.087 0.913 9 C -0.053 4.053 10 C 0.043 3.957 11 H 0.043 0.957 12 C -0.549 4.549 13 H 0.073 0.927 14 C -0.138 4.138 15 N -0.524 5.524 16 Si 0.711 3.289 17 H -0.206 1.206 18 H -0.215 1.215 19 H -0.204 1.204 20 C -0.123 4.123 21 C -0.140 4.140 22 C -0.059 4.059 23 N -0.265 5.265 24 C -0.116 4.116 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.037 0.963 28 H 0.085 0.915 29 H 0.042 0.958 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.032 0.968 42 H 0.085 0.915 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.195 9.239 6.844 11.560 hybrid contribution -1.083 0.192 -1.533 1.886 sum -2.278 9.431 5.311 11.061 Atomic orbital electron populations 1.22281 0.88248 1.01983 0.99487 1.62018 1.06716 1.12873 1.45914 1.22078 0.95318 0.89883 0.99406 1.21976 0.94267 0.99349 1.00367 1.20567 0.86062 0.97358 0.95983 0.97417 1.21214 0.91782 0.93738 1.01797 0.91286 1.22231 0.96111 0.97834 0.89116 1.19358 0.91753 0.93967 0.90627 0.95685 1.21201 1.16308 1.04366 1.13007 0.92659 1.24923 0.95087 0.97643 0.96115 1.69952 1.27823 1.37058 1.17564 0.86821 0.80091 0.84467 0.77520 1.20581 1.21543 1.20369 1.21711 0.96073 0.98033 0.96464 1.21826 0.97771 0.92866 1.01569 1.22547 0.97589 0.98784 0.86964 1.59704 1.11113 1.34806 1.20880 1.22404 0.99830 0.90126 0.99280 0.91416 0.92241 0.96256 0.91505 0.95751 0.90788 0.91822 0.95646 0.89292 0.93301 0.93982 0.92502 0.94887 0.91220 0.92911 0.94493 0.96782 0.91480 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.61 60.07 0.58 0.98 16 2 N -0.55 -9.20 4.89 -242.51 -1.19 -10.38 16 3 C 0.06 0.92 5.42 -3.61 -0.02 0.90 16 4 C -0.12 -1.85 4.32 -26.68 -0.12 -1.97 16 5 C 0.11 2.00 1.58 -70.18 -0.11 1.89 16 6 H 0.01 0.16 7.03 -51.93 -0.37 -0.21 16 7 C -0.07 -1.37 1.71 -90.96 -0.16 -1.53 16 8 H 0.07 1.54 7.66 -51.93 -0.40 1.14 16 9 C 0.07 1.46 4.33 -3.76 -0.02 1.44 16 10 C 0.06 1.50 1.51 -90.07 -0.14 1.36 16 11 H 0.03 0.67 6.84 -51.93 -0.36 0.32 16 12 C -0.51 -13.60 7.82 -34.44 -0.27 -13.87 16 13 H 0.06 1.46 6.14 -52.49 -0.32 1.13 16 14 C 0.06 1.74 5.07 -17.82 -0.09 1.65 16 15 N -0.89 -24.87 12.32 55.43 0.68 -24.19 16 16 Si 0.88 21.21 29.54 -169.99 -5.02 16.19 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 C -0.08 -1.99 4.68 -26.01 -0.12 -2.12 16 21 C -0.10 -2.16 5.94 -25.95 -0.15 -2.32 16 22 C 0.07 1.27 5.50 -2.82 -0.02 1.25 16 23 N -0.54 -9.63 3.44 -236.97 -0.81 -10.45 16 24 C 0.03 0.45 8.13 60.07 0.49 0.93 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 27 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 1.16 8.08 -51.92 -0.42 0.74 16 31 H 0.06 0.85 6.13 -51.93 -0.32 0.53 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 1.86 6.31 -51.93 -0.33 1.54 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.04 0.97 6.46 -51.93 -0.34 0.63 16 36 H 0.06 1.51 6.91 -51.93 -0.36 1.15 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 39 H 0.05 0.85 7.57 -51.92 -0.39 0.46 16 40 H 0.04 0.73 6.86 -51.93 -0.36 0.37 16 41 H 0.01 0.19 7.83 -51.93 -0.41 -0.22 16 42 H 0.07 0.87 6.41 -51.93 -0.33 0.54 16 43 H 0.06 0.77 7.99 -51.93 -0.41 0.36 16 LS Contribution 308.69 15.07 4.65 4.65 Total: -1.00 -27.54 308.69 -9.44 -36.98 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.62 Total: -1.41 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -0.14 Total: -11.39 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -1.32 Total: -45.02 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.54 -9.44 -36.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260656028.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.171 kcal (2) G-P(sol) polarization free energy of solvation -27.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds