Wall clock time and date at job start Mon Mar 30 2020 04:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47024 * 111.19516 * 2 1 4 4 C 1.53285 * 110.01147 * 174.25867 * 3 2 1 5 5 C 1.52814 * 108.69802 * 57.96579 * 4 3 2 6 6 H 1.09003 * 104.63524 * 56.12016 * 5 4 3 7 7 C 1.50942 * 110.12129 * 302.99186 * 5 4 3 8 8 H 1.08999 * 110.03692 * 297.23969 * 7 5 4 9 9 C 1.47102 * 110.99838 * 235.27597 * 2 1 3 10 10 C 1.54423 * 107.73222 * 177.77926 * 7 5 4 11 11 H 1.08997 * 110.34265 * 312.97349 * 10 7 5 12 12 C 1.50710 * 110.33458 * 190.84125 * 10 7 5 13 13 H 1.07993 * 119.99780 * 0.02562 * 12 10 7 14 14 C 1.37876 * 119.99465 * 180.02562 * 12 10 7 15 15 N 1.31514 * 120.00675 * 359.97438 * 14 12 10 16 16 Si 1.86807 * 119.99713 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.46667 * 59.99868 * 16 14 12 18 18 H 1.48498 * 109.47235 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47029 * 300.00167 * 16 14 12 20 20 C 1.54800 * 104.94196 * 71.99131 * 10 7 5 21 21 C 1.52552 * 108.16265 * 252.37558 * 20 10 7 22 22 C 1.54911 * 109.89216 * 57.26624 * 21 20 10 23 23 N 1.44399 * 112.41187 * 170.41399 * 5 4 3 24 24 C 1.46904 * 110.99879 * 335.66605 * 23 5 4 25 25 H 1.08997 * 109.46974 * 184.72256 * 1 2 3 26 26 H 1.08999 * 109.46444 * 304.72713 * 1 2 3 27 27 H 1.09002 * 109.46685 * 64.72218 * 1 2 3 28 28 H 1.09003 * 109.34845 * 54.09524 * 3 2 1 29 29 H 1.09001 * 109.28046 * 294.37871 * 3 2 1 30 30 H 1.09008 * 109.59879 * 298.20484 * 4 3 2 31 31 H 1.08998 * 109.60255 * 177.73416 * 4 3 2 32 32 H 1.09002 * 109.58143 * 65.66809 * 9 2 1 33 33 H 1.09001 * 109.57826 * 305.40405 * 9 2 1 34 34 H 0.96992 * 120.00393 * 180.02562 * 15 14 12 35 35 H 1.08992 * 109.72751 * 12.03868 * 20 10 7 36 36 H 1.09000 * 109.73040 * 132.66429 * 20 10 7 37 37 H 1.09000 * 109.39855 * 177.39924 * 21 20 10 38 38 H 1.09003 * 109.39883 * 297.13530 * 21 20 10 39 39 H 1.09008 * 109.57185 * 149.52040 * 22 21 20 40 40 H 1.08992 * 109.57643 * 269.89184 * 22 21 20 41 41 H 1.08994 * 109.46795 * 296.84460 * 24 23 5 42 42 H 1.08996 * 109.47438 * 56.84353 * 24 23 5 43 43 H 1.09001 * 109.47005 * 176.84350 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0006 1.3708 0.0000 4 6 3.5264 1.3417 0.1441 5 6 4.1114 0.5209 -1.0045 6 1 3.7350 1.0027 -1.9069 7 6 3.5179 -0.8669 -1.0058 8 1 3.7821 -1.3870 -0.0850 9 6 1.9962 -0.7823 -1.1287 10 6 4.1020 -1.6271 -2.2165 11 1 4.0516 -1.0085 -3.1125 12 6 3.3583 -2.9201 -2.4314 13 1 2.5432 -3.1896 -1.7762 14 6 3.7185 -3.7589 -3.4647 15 7 4.7108 -3.4306 -4.2629 16 14 2.7972 -5.3620 -3.7308 17 1 1.3634 -5.0722 -3.9871 18 1 3.3736 -6.0765 -4.8980 19 1 2.9215 -6.2114 -2.5190 20 6 5.5756 -1.9108 -1.8365 21 6 6.4668 -1.0002 -2.6755 22 6 6.0776 0.4806 -2.4402 23 7 5.5500 0.6222 -1.0766 24 6 6.0219 1.8674 -0.4562 25 1 -0.3633 -1.0242 0.0846 26 1 -0.3632 0.5854 0.8446 27 1 -0.3633 0.4388 -0.9293 28 1 1.5688 1.9256 0.8331 29 1 1.7348 1.8599 -0.9371 30 1 3.7951 0.8826 1.0955 31 1 3.9170 2.3585 0.1029 32 1 1.7320 -0.2938 -2.0667 33 1 1.5716 -1.7860 -1.1074 34 1 4.9639 -4.0205 -4.9900 35 1 5.7293 -1.7019 -0.7779 36 1 5.8149 -2.9537 -2.0442 37 1 7.5081 -1.1506 -2.3909 38 1 6.3424 -1.2441 -3.7306 39 1 6.9577 1.1127 -2.5587 40 1 5.3140 0.7762 -3.1596 41 1 5.6299 2.7204 -1.0100 42 1 5.6744 1.9135 0.5759 43 1 7.1114 1.8921 -0.4742 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260656028.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:17 Heat of formation + Delta-G solvation = -3.172161 kcal Electronic energy + Delta-G solvation = -20663.489082 eV Core-core repulsion = 17935.737223 eV Total energy + Delta-G solvation = -2727.751859 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.21439 -38.09912 -36.33419 -33.83160 -33.52301 -31.47568 -28.97269 -27.72307 -26.96476 -25.47063 -24.63968 -22.56404 -21.83036 -20.81762 -20.26104 -18.16887 -17.23540 -16.47745 -16.07620 -15.97186 -15.94724 -15.75641 -15.03865 -14.62843 -14.36445 -14.12022 -13.88191 -13.49008 -13.27882 -13.15406 -12.99543 -12.79929 -12.60461 -12.46313 -12.27356 -12.18195 -12.09789 -12.00469 -11.72787 -11.48846 -11.16746 -11.05609 -10.52491 -10.42268 -10.27656 -9.23053 -8.90757 -8.01188 -6.09828 1.42049 1.43120 1.49738 2.47772 2.94130 3.06718 3.29087 3.83112 4.03188 4.13758 4.24865 4.31653 4.38575 4.43887 4.51924 4.56113 4.61266 4.66573 4.70923 4.74059 4.82388 4.85164 4.96132 5.00044 5.01891 5.05491 5.10347 5.15830 5.19446 5.29040 5.38278 5.41653 5.58907 5.74492 5.86694 6.06116 6.14040 6.17698 6.25987 6.39226 6.48205 6.54552 7.01593 7.55649 9.05377 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018236 B = 0.009657 C = 0.006588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.086320 B = 2898.760565 C = 4249.001896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.557 5.557 3 C 0.060 3.940 4 C -0.112 4.112 5 C 0.113 3.887 6 H -0.013 1.013 7 C -0.059 4.059 8 H 0.054 0.946 9 C 0.086 3.914 10 C 0.064 3.936 11 H -0.009 1.009 12 C -0.524 4.524 13 H 0.053 0.947 14 C 0.016 3.984 15 N -0.910 5.910 16 Si 0.941 3.059 17 H -0.274 1.274 18 H -0.288 1.288 19 H -0.274 1.274 20 C -0.072 4.072 21 C -0.098 4.098 22 C 0.078 3.922 23 N -0.556 5.556 24 C 0.031 3.969 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.019 0.981 28 H 0.100 0.900 29 H 0.020 0.980 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.007 0.993 33 H 0.068 0.932 34 H 0.256 0.744 35 H 0.046 0.954 36 H 0.018 0.982 37 H 0.048 0.952 38 H 0.039 0.961 39 H 0.085 0.915 40 H 0.018 0.982 41 H 0.026 0.974 42 H 0.083 0.917 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.972 11.622 8.160 14.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.282 5.282 3 C -0.068 4.068 4 C -0.150 4.150 5 C 0.004 3.996 6 H 0.005 0.995 7 C -0.079 4.079 8 H 0.072 0.928 9 C -0.042 4.042 10 C 0.045 3.955 11 H 0.009 0.991 12 C -0.562 4.562 13 H 0.071 0.929 14 C -0.183 4.183 15 N -0.550 5.550 16 Si 0.768 3.232 17 H -0.200 1.200 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.111 4.111 21 C -0.137 4.137 22 C -0.050 4.050 23 N -0.279 5.279 24 C -0.116 4.116 25 H 0.083 0.917 26 H 0.107 0.893 27 H 0.038 0.962 28 H 0.118 0.882 29 H 0.039 0.961 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.025 0.975 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.037 0.963 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.103 0.897 40 H 0.036 0.964 41 H 0.045 0.955 42 H 0.101 0.899 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.552 10.993 8.676 14.090 hybrid contribution -0.976 -0.351 -2.084 2.328 sum -2.528 10.642 6.592 12.771 Atomic orbital electron populations 1.22371 0.86409 1.02542 1.00750 1.61997 1.08471 1.13934 1.43783 1.22211 0.95206 0.88856 1.00571 1.21949 0.94385 1.00127 0.98569 1.20456 0.86667 0.95644 0.96801 0.99532 1.21039 0.92852 0.95041 0.98971 0.92773 1.21910 0.95333 0.97276 0.89670 1.19209 0.92442 0.93004 0.90852 0.99067 1.21545 1.16356 1.05407 1.12924 0.92887 1.25629 0.95942 1.00654 0.96101 1.70086 1.28986 1.37973 1.17909 0.85883 0.79067 0.80888 0.77386 1.19980 1.21362 1.19926 1.21508 0.96260 0.96300 0.96990 1.21708 0.98109 0.94680 0.99155 1.22391 0.98324 0.96870 0.87374 1.59601 1.10642 1.37509 1.20184 1.22518 1.00829 0.88476 0.99815 0.91661 0.89303 0.96217 0.88199 0.96134 0.90596 0.88993 0.97506 0.91369 0.93555 0.93498 0.96307 0.93365 0.94240 0.89703 0.96392 0.95528 0.89881 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 9.61 127.69 1.23 1.93 16 2 N -0.56 -17.77 4.89 -921.16 -4.51 -22.27 16 3 C 0.06 1.60 5.42 86.38 0.47 2.07 16 4 C -0.11 -3.09 4.32 30.63 0.13 -2.95 16 5 C 0.11 4.07 1.58 44.65 0.07 4.14 16 6 H -0.01 -0.53 7.03 -2.39 -0.02 -0.55 16 7 C -0.06 -2.53 1.71 -11.01 -0.02 -2.55 16 8 H 0.05 2.45 7.66 -2.39 -0.02 2.43 16 9 C 0.09 3.45 4.33 86.23 0.37 3.82 16 10 C 0.06 3.24 1.51 -10.44 -0.02 3.22 16 11 H -0.01 -0.50 6.84 -2.39 -0.02 -0.52 16 12 C -0.52 -29.06 7.82 25.60 0.20 -28.85 16 13 H 0.05 2.90 6.14 -2.91 -0.02 2.88 16 14 C 0.02 0.87 5.07 84.65 0.43 1.30 16 15 N -0.91 -53.23 12.32 21.45 0.26 -52.97 16 16 Si 0.94 44.57 29.54 68.60 2.03 46.60 16 17 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 19 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 20 C -0.07 -3.53 4.68 31.06 0.15 -3.39 16 21 C -0.10 -4.26 5.94 31.10 0.18 -4.07 16 22 C 0.08 2.84 5.50 86.96 0.48 3.32 16 23 N -0.56 -18.87 3.44 -903.64 -3.11 -21.97 16 24 C 0.03 0.75 8.13 127.69 1.04 1.78 16 25 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.09 1.80 8.09 -2.39 -0.02 1.78 16 27 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.10 2.09 8.09 -2.39 -0.02 2.07 16 29 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.08 2.10 8.08 -2.38 -0.02 2.08 16 31 H 0.09 2.04 6.13 -2.39 -0.01 2.03 16 32 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.07 2.96 6.31 -2.39 -0.02 2.94 16 34 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 35 H 0.05 2.20 6.46 -2.39 -0.02 2.19 16 36 H 0.02 1.02 6.91 -2.39 -0.02 1.01 16 37 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.08 2.53 7.57 -2.38 -0.02 2.52 16 40 H 0.02 0.72 6.86 -2.39 -0.02 0.70 16 41 H 0.03 0.60 7.83 -2.39 -0.02 0.58 16 42 H 0.08 1.79 6.41 -2.39 -0.02 1.77 16 43 H 0.07 1.63 7.99 -2.39 -0.02 1.61 16 Total: -1.00 -61.98 308.69 0.35 -61.63 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 0.96 Total: 9.21 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: 4.71 Total: -20.22 kcal Atomic # 7 Polarization: -89.86 SS G_CDS: -7.35 Total: -97.21 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -61.98 0.35 -61.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260656028.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.463 kcal (2) G-P(sol) polarization free energy of solvation -61.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds