Wall clock time and date at job start Mon Mar 30 2020 04:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46829 * 110.99944 * 2 1 4 4 C 1.53099 * 109.54837 * 186.12188 * 3 2 1 5 5 C 1.53393 * 108.93190 * 300.90586 * 4 3 2 6 6 H 1.09001 * 106.73187 * 172.24221 * 5 4 3 7 7 C 1.51165 * 109.65000 * 57.30107 * 5 4 3 8 8 H 1.09002 * 109.91969 * 64.61804 * 7 5 4 9 9 C 1.46906 * 111.00005 * 124.32441 * 2 1 3 10 10 C 1.54674 * 107.88098 * 184.47643 * 7 5 4 11 11 H 1.09003 * 110.34498 * 312.82381 * 10 7 5 12 12 C 1.50696 * 110.23606 * 190.87594 * 10 7 5 13 13 H 1.07998 * 120.00311 * 274.20146 * 12 10 7 14 14 C 1.37880 * 120.00136 * 94.19306 * 12 10 7 15 15 N 1.31513 * 119.99861 * 187.06785 * 14 12 10 16 16 Si 1.86798 * 119.99805 * 7.06849 * 14 12 10 17 17 H 1.48491 * 109.47481 * 274.85648 * 16 14 12 18 18 H 1.48502 * 109.47274 * 34.85875 * 16 14 12 19 19 H 1.48502 * 109.46947 * 154.85175 * 16 14 12 20 20 C 1.54798 * 105.50091 * 71.87855 * 10 7 5 21 21 C 1.52548 * 107.37498 * 251.62547 * 20 10 7 22 22 C 1.54928 * 109.78397 * 57.01519 * 21 20 10 23 23 N 1.45043 * 109.94998 * 287.92593 * 5 4 3 24 24 C 1.46903 * 110.99816 * 331.79379 * 23 5 4 25 25 H 1.08998 * 109.47029 * 63.95761 * 1 2 3 26 26 H 1.09001 * 109.46793 * 183.95691 * 1 2 3 27 27 H 1.08992 * 109.47527 * 303.95215 * 1 2 3 28 28 H 1.09003 * 109.45746 * 66.09297 * 3 2 1 29 29 H 1.09006 * 109.45545 * 306.14442 * 3 2 1 30 30 H 1.09001 * 109.56257 * 181.07313 * 4 3 2 31 31 H 1.09001 * 109.65187 * 60.80027 * 4 3 2 32 32 H 1.08996 * 109.48705 * 294.79770 * 9 2 1 33 33 H 1.09005 * 109.48272 * 54.83745 * 9 2 1 34 34 H 0.97006 * 119.99482 * 179.97438 * 15 14 12 35 35 H 1.09006 * 109.87389 * 11.09190 * 20 10 7 36 36 H 1.08996 * 109.87204 * 132.15534 * 20 10 7 37 37 H 1.08999 * 109.41498 * 177.11184 * 21 20 10 38 38 H 1.08994 * 109.41961 * 296.92092 * 21 20 10 39 39 H 1.09007 * 109.62916 * 149.47421 * 22 21 20 40 40 H 1.08998 * 109.63855 * 270.07062 * 22 21 20 41 41 H 1.09006 * 109.46840 * 299.86090 * 24 23 5 42 42 H 1.09002 * 109.47536 * 59.86355 * 24 23 5 43 43 H 1.09004 * 109.47227 * 179.86679 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3708 0.0000 4 6 3.5180 1.3350 -0.1539 5 6 4.1168 0.5312 1.0074 6 1 5.1779 0.4091 0.7902 7 6 3.5203 -0.8577 1.0251 8 1 3.8076 -1.3968 0.1223 9 6 1.9955 -0.7734 1.1327 10 6 4.0639 -1.5920 2.2732 11 1 5.1434 -1.4617 2.3494 12 6 3.7202 -3.0578 2.2064 13 1 2.7645 -3.4055 2.5698 14 6 4.6258 -3.9550 1.6811 15 7 4.2761 -5.2089 1.4939 16 14 6.3494 -3.3895 1.2353 17 1 6.3436 -2.8161 -0.1345 18 1 6.7970 -2.3556 2.2027 19 1 7.2782 -4.5472 1.2833 20 6 3.3581 -0.9312 3.4821 21 6 4.4014 -0.0962 4.2180 22 6 5.0251 0.9378 3.2475 23 7 4.0214 1.2933 2.2378 24 6 4.0368 2.7368 1.9654 25 1 -0.3633 0.4512 -0.9233 26 1 -0.3633 -1.0252 0.0709 27 1 -0.3634 0.5739 0.8524 28 1 1.7365 1.8590 0.9396 29 1 1.5593 1.9270 -0.8300 30 1 3.9108 2.3516 -0.1348 31 1 3.7798 0.8603 -1.0995 32 1 1.7235 -0.2815 2.0665 33 1 1.5733 -1.7781 1.1144 34 1 4.9132 -5.8400 1.1240 35 1 2.5487 -0.2897 3.1334 36 1 2.9630 -1.7000 4.1461 37 1 3.9269 0.4264 5.0486 38 1 5.1838 -0.7505 4.6022 39 1 5.3188 1.8294 3.8017 40 1 5.8972 0.5026 2.7595 41 1 4.9675 3.0019 1.4637 42 1 3.1928 2.9950 1.3257 43 1 3.9617 3.2846 2.9048 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260656033.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:20 Heat of formation + Delta-G solvation = 30.759703 kcal Electronic energy + Delta-G solvation = -21026.741292 eV Core-core repulsion = 18300.460829 eV Total energy + Delta-G solvation = -2726.280463 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.09469 -36.42664 -34.89077 -32.58558 -31.80119 -29.77021 -27.75521 -26.56610 -25.51691 -23.98628 -22.95679 -21.96099 -20.61504 -18.67336 -18.23645 -16.80943 -15.52433 -15.18083 -14.86055 -14.78236 -14.58802 -14.04152 -13.81516 -13.24018 -12.80072 -12.64485 -12.39442 -12.22562 -12.06602 -11.92708 -11.75525 -11.27874 -11.08105 -11.00715 -10.89733 -10.76813 -10.58337 -10.28829 -9.94851 -9.78655 -9.59077 -9.34863 -8.96105 -8.74111 -8.41601 -7.67609 -7.62739 -5.99976 -3.95445 3.32796 3.40254 3.40337 4.18994 4.47688 4.49082 5.06826 5.26354 5.35253 5.39521 5.49754 5.49935 5.54549 5.68716 5.73046 5.78612 5.85684 5.91135 5.94408 5.97303 5.99762 6.14566 6.17279 6.27942 6.31844 6.38997 6.45290 6.48800 6.58513 6.71832 6.88986 6.96693 7.11386 7.20444 7.46077 7.53307 7.59733 7.65560 7.69089 7.76863 7.93447 8.64232 9.06967 9.65070 11.13659 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019288 B = 0.010290 C = 0.008409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.347635 B = 2720.509404 C = 3329.007769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.548 5.548 3 C 0.064 3.936 4 C -0.127 4.127 5 C 0.102 3.898 6 H 0.017 0.983 7 C -0.069 4.069 8 H 0.073 0.927 9 C 0.069 3.931 10 C 0.015 3.985 11 H 0.037 0.963 12 C -0.498 4.498 13 H 0.072 0.928 14 C 0.071 3.929 15 N -0.903 5.903 16 Si 0.871 3.129 17 H -0.277 1.277 18 H -0.268 1.268 19 H -0.292 1.292 20 C -0.118 4.118 21 C -0.110 4.110 22 C 0.067 3.933 23 N -0.546 5.546 24 C 0.028 3.972 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.018 0.982 28 H 0.038 0.962 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.261 0.739 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.045 0.955 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.039 0.961 41 H 0.016 0.984 42 H 0.071 0.929 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.006 15.122 -0.379 15.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.273 5.273 3 C -0.064 4.064 4 C -0.165 4.165 5 C -0.006 4.006 6 H 0.035 0.965 7 C -0.089 4.089 8 H 0.091 0.909 9 C -0.057 4.057 10 C -0.004 4.004 11 H 0.055 0.945 12 C -0.535 4.535 13 H 0.090 0.910 14 C -0.130 4.130 15 N -0.541 5.541 16 Si 0.700 3.300 17 H -0.203 1.203 18 H -0.193 1.193 19 H -0.218 1.218 20 C -0.155 4.155 21 C -0.148 4.148 22 C -0.060 4.060 23 N -0.271 5.271 24 C -0.120 4.120 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.037 0.963 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.035 0.965 42 H 0.090 0.910 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.192 14.587 -0.696 14.768 hybrid contribution 1.593 0.711 0.015 1.745 sum -0.599 15.299 -0.680 15.326 Atomic orbital electron populations 1.22270 0.88367 1.01661 0.99594 1.61928 1.06615 1.12897 1.45850 1.21964 0.94867 0.90010 0.99556 1.22097 0.95693 0.99800 0.98896 1.20973 0.97648 0.94999 0.86992 0.96463 1.21508 0.94064 0.91737 1.01578 0.90852 1.22387 0.95686 0.97601 0.89993 1.19994 0.95390 0.94897 0.90120 0.94472 1.21060 1.03390 0.89403 1.39683 0.90977 1.25035 0.98157 0.94864 0.94966 1.69921 1.35239 1.03521 1.45450 0.86919 0.85810 0.78041 0.79240 1.20254 1.19306 1.21823 1.22306 0.98007 0.97385 0.97796 1.21914 0.99252 0.96829 0.96833 1.22447 0.92255 0.97976 0.93339 1.59680 1.51680 1.03449 1.12256 1.22505 0.99911 0.88802 1.00756 0.92370 0.91498 0.96350 0.94438 0.92281 0.91552 0.91066 0.93161 0.90295 0.92887 0.90249 0.93122 0.93621 0.92799 0.92327 0.94252 0.96503 0.91049 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.62 60.07 0.58 1.00 16 2 N -0.55 -9.31 4.91 -242.84 -1.19 -10.50 16 3 C 0.06 0.94 4.96 -3.81 -0.02 0.93 16 4 C -0.13 -1.91 5.06 -26.48 -0.13 -2.05 16 5 C 0.10 1.81 1.66 -69.43 -0.12 1.69 16 6 H 0.02 0.33 7.48 -51.93 -0.39 -0.06 16 7 C -0.07 -1.43 2.21 -90.61 -0.20 -1.63 16 8 H 0.07 1.72 8.13 -51.93 -0.42 1.30 16 9 C 0.07 1.34 4.15 -3.77 -0.02 1.33 16 10 C 0.02 0.35 1.33 -89.95 -0.12 0.23 16 11 H 0.04 0.89 3.72 -51.93 -0.19 0.70 16 12 C -0.50 -13.61 8.13 -34.44 -0.28 -13.89 16 13 H 0.07 2.15 8.04 -52.49 -0.42 1.72 16 14 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 15 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 16 Si 0.87 21.80 27.37 -169.99 -4.65 17.15 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.27 -6.45 6.34 56.52 0.36 -6.09 16 19 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 20 C -0.12 -2.37 4.88 -26.02 -0.13 -2.49 16 21 C -0.11 -1.92 5.91 -25.95 -0.15 -2.07 16 22 C 0.07 1.09 5.52 -2.89 -0.02 1.07 16 23 N -0.55 -8.73 3.12 -236.07 -0.74 -9.47 16 24 C 0.03 0.36 7.93 60.07 0.48 0.84 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.97 8.03 -51.93 -0.42 0.55 16 27 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.04 0.56 6.69 -51.93 -0.35 0.21 16 29 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 30 H 0.07 0.86 5.63 -51.93 -0.29 0.56 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.05 0.98 5.14 -51.93 -0.27 0.71 16 33 H 0.08 1.72 7.64 -51.93 -0.40 1.32 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.08 1.55 3.75 -51.93 -0.19 1.36 16 36 H 0.05 1.08 7.72 -51.93 -0.40 0.68 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 0.80 7.49 -51.93 -0.39 0.41 16 40 H 0.04 0.69 6.90 -51.93 -0.36 0.33 16 41 H 0.02 0.20 7.83 -51.93 -0.41 -0.20 16 42 H 0.07 0.86 4.82 -51.93 -0.25 0.61 16 43 H 0.06 0.67 7.88 -51.93 -0.41 0.27 16 LS Contribution 300.76 15.07 4.53 4.53 Total: -1.00 -29.18 300.76 -8.77 -37.94 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -7.27 Total: 0.25 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -0.22 Total: -13.12 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -1.15 Total: -46.75 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.65 Total: 17.15 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.18 -8.77 -37.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260656033.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.701 kcal (2) G-P(sol) polarization free energy of solvation -29.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds