Wall clock time and date at job start Mon Mar 30 2020 04:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46829 * 110.99944 * 2 1 4 4 C 1.53099 * 109.54837 * 186.12188 * 3 2 1 5 5 C 1.53393 * 108.93190 * 300.90586 * 4 3 2 6 6 H 1.09001 * 106.73187 * 172.24221 * 5 4 3 7 7 C 1.51165 * 109.65000 * 57.30107 * 5 4 3 8 8 H 1.09002 * 109.91969 * 64.61804 * 7 5 4 9 9 C 1.46906 * 111.00005 * 124.32441 * 2 1 3 10 10 C 1.54674 * 107.88098 * 184.47643 * 7 5 4 11 11 H 1.09003 * 110.34498 * 312.82381 * 10 7 5 12 12 C 1.50696 * 110.23606 * 190.87594 * 10 7 5 13 13 H 1.07998 * 120.00311 * 274.20146 * 12 10 7 14 14 C 1.37880 * 120.00136 * 94.19306 * 12 10 7 15 15 N 1.31513 * 119.99861 * 187.06785 * 14 12 10 16 16 Si 1.86798 * 119.99805 * 7.06849 * 14 12 10 17 17 H 1.48491 * 109.47481 * 274.85648 * 16 14 12 18 18 H 1.48502 * 109.47274 * 34.85875 * 16 14 12 19 19 H 1.48502 * 109.46947 * 154.85175 * 16 14 12 20 20 C 1.54798 * 105.50091 * 71.87855 * 10 7 5 21 21 C 1.52548 * 107.37498 * 251.62547 * 20 10 7 22 22 C 1.54928 * 109.78397 * 57.01519 * 21 20 10 23 23 N 1.45043 * 109.94998 * 287.92593 * 5 4 3 24 24 C 1.46903 * 110.99816 * 331.79379 * 23 5 4 25 25 H 1.08998 * 109.47029 * 63.95761 * 1 2 3 26 26 H 1.09001 * 109.46793 * 183.95691 * 1 2 3 27 27 H 1.08992 * 109.47527 * 303.95215 * 1 2 3 28 28 H 1.09003 * 109.45746 * 66.09297 * 3 2 1 29 29 H 1.09006 * 109.45545 * 306.14442 * 3 2 1 30 30 H 1.09001 * 109.56257 * 181.07313 * 4 3 2 31 31 H 1.09001 * 109.65187 * 60.80027 * 4 3 2 32 32 H 1.08996 * 109.48705 * 294.79770 * 9 2 1 33 33 H 1.09005 * 109.48272 * 54.83745 * 9 2 1 34 34 H 0.97006 * 119.99482 * 179.97438 * 15 14 12 35 35 H 1.09006 * 109.87389 * 11.09190 * 20 10 7 36 36 H 1.08996 * 109.87204 * 132.15534 * 20 10 7 37 37 H 1.08999 * 109.41498 * 177.11184 * 21 20 10 38 38 H 1.08994 * 109.41961 * 296.92092 * 21 20 10 39 39 H 1.09007 * 109.62916 * 149.47421 * 22 21 20 40 40 H 1.08998 * 109.63855 * 270.07062 * 22 21 20 41 41 H 1.09006 * 109.46840 * 299.86090 * 24 23 5 42 42 H 1.09002 * 109.47536 * 59.86355 * 24 23 5 43 43 H 1.09004 * 109.47227 * 179.86679 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3708 0.0000 4 6 3.5180 1.3350 -0.1539 5 6 4.1168 0.5312 1.0074 6 1 5.1779 0.4091 0.7902 7 6 3.5203 -0.8577 1.0251 8 1 3.8076 -1.3968 0.1223 9 6 1.9955 -0.7734 1.1327 10 6 4.0639 -1.5920 2.2732 11 1 5.1434 -1.4617 2.3494 12 6 3.7202 -3.0578 2.2064 13 1 2.7645 -3.4055 2.5698 14 6 4.6258 -3.9550 1.6811 15 7 4.2761 -5.2089 1.4939 16 14 6.3494 -3.3895 1.2353 17 1 6.3436 -2.8161 -0.1345 18 1 6.7970 -2.3556 2.2027 19 1 7.2782 -4.5472 1.2833 20 6 3.3581 -0.9312 3.4821 21 6 4.4014 -0.0962 4.2180 22 6 5.0251 0.9378 3.2475 23 7 4.0214 1.2933 2.2378 24 6 4.0368 2.7368 1.9654 25 1 -0.3633 0.4512 -0.9233 26 1 -0.3633 -1.0252 0.0709 27 1 -0.3634 0.5739 0.8524 28 1 1.7365 1.8590 0.9396 29 1 1.5593 1.9270 -0.8300 30 1 3.9108 2.3516 -0.1348 31 1 3.7798 0.8603 -1.0995 32 1 1.7235 -0.2815 2.0665 33 1 1.5733 -1.7781 1.1144 34 1 4.9132 -5.8400 1.1240 35 1 2.5487 -0.2897 3.1334 36 1 2.9630 -1.7000 4.1461 37 1 3.9269 0.4264 5.0486 38 1 5.1838 -0.7505 4.6022 39 1 5.3188 1.8294 3.8017 40 1 5.8972 0.5026 2.7595 41 1 4.9675 3.0019 1.4637 42 1 3.1928 2.9950 1.3257 43 1 3.9617 3.2846 2.9048 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260656033.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:19 Heat of formation + Delta-G solvation = 10.946812 kcal Electronic energy + Delta-G solvation = -21027.600444 eV Core-core repulsion = 18300.460829 eV Total energy + Delta-G solvation = -2727.139615 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.51003 -37.73672 -36.49372 -34.30384 -33.56727 -31.08975 -29.38138 -27.89399 -27.05012 -25.29556 -24.62162 -23.32324 -22.09067 -20.24708 -19.63566 -18.93611 -16.86190 -16.75365 -16.29581 -16.19461 -15.88816 -15.79438 -15.05847 -14.79457 -14.47942 -14.13271 -13.97514 -13.66387 -13.41526 -13.24771 -13.17120 -12.85027 -12.61047 -12.45709 -12.27634 -12.18503 -11.98783 -11.91316 -11.72714 -11.33549 -11.17240 -11.15679 -10.68142 -10.55849 -10.53298 -9.00785 -8.91318 -8.25076 -6.23083 1.29780 1.30785 1.39728 2.34637 2.93431 3.08128 3.22042 3.83417 3.99322 4.14015 4.23128 4.29644 4.31367 4.42529 4.48872 4.55940 4.62277 4.68033 4.73031 4.74919 4.76339 4.84616 4.89676 4.91667 5.03512 5.03781 5.04802 5.05629 5.18053 5.25863 5.29684 5.36244 5.45929 5.51004 5.73175 5.83109 5.88566 6.26557 6.37863 6.39203 6.41409 6.43661 6.83134 7.39702 8.92359 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019288 B = 0.010290 C = 0.008409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.347635 B = 2720.509404 C = 3329.007769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.566 5.566 3 C 0.066 3.934 4 C -0.122 4.122 5 C 0.107 3.893 6 H 0.002 0.998 7 C -0.066 4.066 8 H 0.037 0.963 9 C 0.086 3.914 10 C 0.015 3.985 11 H 0.030 0.970 12 C -0.493 4.493 13 H 0.030 0.970 14 C 0.011 3.989 15 N -0.952 5.952 16 Si 0.932 3.068 17 H -0.271 1.271 18 H -0.251 1.251 19 H -0.289 1.289 20 C -0.110 4.110 21 C -0.109 4.109 22 C 0.069 3.931 23 N -0.554 5.554 24 C 0.027 3.973 25 H 0.082 0.918 26 H 0.054 0.946 27 H 0.029 0.971 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.039 0.961 34 H 0.262 0.738 35 H 0.089 0.911 36 H 0.026 0.974 37 H 0.071 0.929 38 H 0.043 0.957 39 H 0.093 0.907 40 H 0.022 0.978 41 H 0.027 0.973 42 H 0.082 0.918 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.489 19.217 -0.495 19.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.291 5.291 3 C -0.061 4.061 4 C -0.160 4.160 5 C -0.001 4.001 6 H 0.020 0.980 7 C -0.086 4.086 8 H 0.056 0.944 9 C -0.041 4.041 10 C -0.004 4.004 11 H 0.048 0.952 12 C -0.531 4.531 13 H 0.049 0.951 14 C -0.185 4.185 15 N -0.594 5.594 16 Si 0.758 3.242 17 H -0.197 1.197 18 H -0.175 1.175 19 H -0.216 1.216 20 C -0.147 4.147 21 C -0.147 4.147 22 C -0.058 4.058 23 N -0.279 5.279 24 C -0.120 4.120 25 H 0.101 0.899 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.045 0.955 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.112 0.888 40 H 0.041 0.959 41 H 0.045 0.955 42 H 0.100 0.900 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.683 18.720 -0.806 18.813 hybrid contribution 1.302 -0.585 0.077 1.429 sum -0.382 18.136 -0.729 18.154 Atomic orbital electron populations 1.22315 0.86661 1.01481 1.01335 1.61876 1.08330 1.14481 1.44386 1.22050 0.94491 0.88575 1.01012 1.22097 0.96008 1.00896 0.96978 1.20743 0.96436 0.93776 0.89188 0.98037 1.21260 0.95186 0.93711 0.98456 0.94434 1.22032 0.94578 0.96179 0.91310 1.19939 0.95262 0.92331 0.92886 0.95151 1.21344 1.01487 0.92230 1.38072 0.95133 1.25831 1.02360 0.94875 0.95441 1.70072 1.36724 1.04963 1.47604 0.85929 0.80838 0.77964 0.79458 1.19655 1.17493 1.21565 1.22160 0.99002 0.97144 0.96426 1.21891 0.98150 0.96953 0.97743 1.22447 0.91424 0.98751 0.93185 1.59583 1.51644 1.05395 1.11271 1.22614 1.00867 0.86220 1.02315 0.89915 0.92733 0.95200 0.93718 0.89584 0.88311 0.92043 0.92885 0.94260 0.92937 0.89326 0.95519 0.91075 0.93814 0.88833 0.95933 0.95487 0.89969 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 9.62 127.69 1.23 2.04 16 2 N -0.57 -18.46 4.91 -922.22 -4.53 -22.99 16 3 C 0.07 1.71 4.96 86.35 0.43 2.14 16 4 C -0.12 -3.28 5.06 30.76 0.16 -3.13 16 5 C 0.11 3.60 1.66 44.80 0.07 3.68 16 6 H 0.00 0.06 7.48 -2.39 -0.02 0.04 16 7 C -0.07 -2.78 2.21 -10.79 -0.02 -2.80 16 8 H 0.04 1.82 8.13 -2.39 -0.02 1.80 16 9 C 0.09 3.38 4.15 86.33 0.36 3.74 16 10 C 0.02 0.71 1.33 -10.36 -0.01 0.69 16 11 H 0.03 1.46 3.72 -2.39 -0.01 1.45 16 12 C -0.49 -28.52 8.13 25.60 0.21 -28.31 16 13 H 0.03 1.96 8.04 -2.91 -0.02 1.94 16 14 C 0.01 0.66 5.47 84.66 0.46 1.12 16 15 N -0.95 -61.12 13.96 21.45 0.30 -60.82 16 16 Si 0.93 46.20 27.37 68.60 1.88 48.08 16 17 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 18 H -0.25 -11.61 6.34 99.48 0.63 -10.98 16 19 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 20 C -0.11 -4.44 4.88 31.06 0.15 -4.29 16 21 C -0.11 -3.59 5.91 31.10 0.18 -3.41 16 22 C 0.07 2.01 5.52 86.99 0.48 2.50 16 23 N -0.55 -15.83 3.12 -900.80 -2.81 -18.64 16 24 C 0.03 0.54 7.93 127.69 1.01 1.55 16 25 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.05 1.57 8.03 -2.39 -0.02 1.55 16 27 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.04 1.12 6.69 -2.39 -0.02 1.11 16 29 H 0.09 1.82 8.12 -2.38 -0.02 1.81 16 30 H 0.10 2.06 5.63 -2.39 -0.01 2.04 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.05 2.04 5.14 -2.39 -0.01 2.03 16 33 H 0.04 1.82 7.64 -2.38 -0.02 1.80 16 34 H 0.26 15.84 8.31 -92.70 -0.77 15.07 16 35 H 0.09 3.40 3.75 -2.38 -0.01 3.40 16 36 H 0.03 1.17 7.72 -2.39 -0.02 1.15 16 37 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.09 2.09 7.49 -2.38 -0.02 2.07 16 40 H 0.02 0.73 6.90 -2.39 -0.02 0.72 16 41 H 0.03 0.51 7.83 -2.38 -0.02 0.49 16 42 H 0.08 1.51 4.82 -2.39 -0.01 1.50 16 43 H 0.08 1.33 7.88 -2.38 -0.02 1.31 16 Total: -1.00 -67.09 300.76 0.45 -66.64 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.90 Total: 12.22 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: 4.71 Total: -24.49 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -7.04 Total: -102.45 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.88 Total: 48.08 kcal Total: -67.09 0.45 -66.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260656033.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.591 kcal (2) G-P(sol) polarization free energy of solvation -67.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds