Wall clock time and date at job start Mon Mar 30 2020 04:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46714 * 111.00184 * 2 1 4 4 C 1.53182 * 109.19843 * 173.21812 * 3 2 1 5 5 C 1.53217 * 108.63510 * 61.52062 * 4 3 2 6 6 H 1.09000 * 109.40933 * 63.52041 * 5 4 3 7 7 C 1.50697 * 109.43493 * 183.42444 * 5 4 3 8 8 H 1.08001 * 120.00494 * 34.99061 * 7 5 4 9 9 C 1.37880 * 119.99721 * 214.98421 * 7 5 4 10 10 N 1.31521 * 119.99780 * 175.01199 * 9 7 5 11 11 Si 1.86795 * 120.00243 * 355.28858 * 9 7 5 12 12 H 1.48499 * 109.47299 * 275.02332 * 11 9 7 13 13 H 1.48505 * 109.47074 * 35.01759 * 11 9 7 14 14 H 1.48503 * 109.47426 * 155.01924 * 11 9 7 15 15 C 1.52232 * 109.65833 * 303.47942 * 5 4 3 16 16 H 1.08999 * 102.37145 * 162.74255 * 15 5 4 17 17 C 1.48170 * 113.90663 * 272.46543 * 15 5 4 18 18 C 1.51642 * 113.64770 * 224.51953 * 17 15 5 19 19 N 1.42335 * 108.74883 * 287.07908 * 18 17 15 20 20 C 1.46904 * 110.99824 * 191.01011 * 19 18 17 21 21 C 1.46047 * 116.14609 * 62.98183 * 19 18 17 22 22 C 1.51302 * 110.21388 * 273.57335 * 21 19 18 23 23 C 1.47137 * 111.00283 * 235.10470 * 2 1 3 24 24 H 1.09009 * 108.61141 * 62.29804 * 23 2 1 25 25 H 1.08998 * 109.47326 * 184.89012 * 1 2 3 26 26 H 1.08994 * 109.46945 * 304.89294 * 1 2 3 27 27 H 1.09000 * 109.46897 * 64.89450 * 1 2 3 28 28 H 1.08999 * 109.51785 * 293.13409 * 3 2 1 29 29 H 1.09005 * 109.51727 * 53.24745 * 3 2 1 30 30 H 1.08998 * 109.60811 * 301.77159 * 4 3 2 31 31 H 1.09004 * 109.60803 * 181.26357 * 4 3 2 32 32 H 0.97000 * 119.99367 * 180.02562 * 10 9 7 33 33 H 1.08997 * 108.89364 * 345.84303 * 17 15 5 34 34 H 1.08995 * 108.89868 * 104.33929 * 17 15 5 35 35 H 1.08997 * 109.89949 * 167.12332 * 18 17 15 36 36 H 1.08993 * 109.31633 * 46.68478 * 18 17 15 37 37 H 1.09002 * 109.46928 * 293.19218 * 20 19 18 38 38 H 1.09001 * 109.46924 * 53.18465 * 20 19 18 39 39 H 1.08994 * 109.47178 * 173.19083 * 20 19 18 40 40 H 1.09004 * 109.34898 * 153.35185 * 21 19 18 41 41 H 1.08994 * 109.34815 * 33.80609 * 21 19 18 42 42 H 1.08998 * 109.43087 * 332.94483 * 22 21 19 43 43 H 1.09001 * 109.43123 * 213.09351 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9948 1.3697 0.0000 4 6 3.5164 1.3251 0.1708 5 6 4.1202 0.5655 -1.0149 6 1 3.9189 1.1125 -1.9359 7 6 5.6093 0.4377 -0.8227 8 1 6.0168 0.3082 0.1691 9 6 6.4518 0.4858 -1.9131 10 7 7.7552 0.4731 -1.7381 11 14 5.7420 0.5770 -3.6386 12 1 5.4303 -0.7933 -4.1186 13 1 4.4991 1.3896 -3.6202 14 1 6.7320 1.2071 -4.5486 15 6 3.4998 -0.8219 -1.1037 16 1 3.7513 -1.1255 -2.1199 17 6 4.1943 -1.8436 -0.2856 18 6 4.4110 -3.1582 -1.0098 19 7 3.1623 -3.8329 -1.1168 20 6 3.3492 -5.2171 -1.5718 21 6 2.1317 -3.1586 -1.9016 22 6 1.3616 -2.1899 -1.0310 23 6 1.9963 -0.7858 -1.1266 24 1 1.6727 -0.3199 -2.0575 25 1 -0.3634 -1.0239 0.0876 26 1 -0.3633 0.5878 0.8429 27 1 -0.3633 0.4360 -0.9306 28 1 1.7485 1.8543 -0.9447 29 1 1.5514 1.9300 0.8232 30 1 3.7654 0.8115 1.0994 31 1 3.9118 2.3406 0.1942 32 1 8.3479 0.5073 -2.5053 33 1 5.1631 -1.4504 0.0224 34 1 3.5991 -2.0476 0.6043 35 1 5.1142 -3.7772 -0.4526 36 1 4.8058 -2.9601 -2.0062 37 1 3.7186 -5.2157 -2.5974 38 1 4.0711 -5.7174 -0.9264 39 1 2.3967 -5.7452 -1.5295 40 1 1.4456 -3.9005 -2.3102 41 1 2.6004 -2.6136 -2.7209 42 1 1.3902 -2.5310 0.0039 43 1 0.3262 -2.1435 -1.3682 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260656226.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:05 Heat of formation + Delta-G solvation = 15.802337 kcal Electronic energy + Delta-G solvation = -20822.748780 eV Core-core repulsion = 18095.819717 eV Total energy + Delta-G solvation = -2726.929063 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.89986 -37.21054 -34.64379 -32.47357 -31.89274 -30.59255 -27.76366 -27.01730 -24.46143 -24.24143 -23.65092 -21.35561 -20.50895 -19.72489 -17.56789 -16.80667 -15.66553 -15.40962 -15.11839 -14.57162 -14.27005 -14.11476 -13.77419 -13.24479 -12.96801 -12.69623 -12.67254 -12.37017 -12.10904 -11.79782 -11.51385 -11.35793 -11.25437 -10.99274 -10.89375 -10.77191 -10.64187 -10.36623 -10.07670 -9.78350 -9.67151 -9.08386 -8.83129 -8.80572 -8.46233 -7.80047 -7.76040 -6.07201 -4.02743 3.25131 3.33592 3.34377 4.27922 4.40762 4.44442 5.09549 5.20010 5.39863 5.45260 5.50039 5.54387 5.60306 5.67753 5.72173 5.81172 5.88537 5.91657 6.01167 6.01484 6.03619 6.10309 6.18830 6.24519 6.29019 6.35054 6.46918 6.66301 6.68459 6.86832 6.92028 7.06552 7.13765 7.42550 7.45600 7.52846 7.61996 7.66864 7.75411 7.81262 7.91672 8.56293 8.98173 9.56677 11.05720 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016441 B = 0.011358 C = 0.007976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.631232 B = 2464.597679 C = 3509.745597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.536 5.536 3 C 0.056 3.944 4 C -0.099 4.099 5 C 0.011 3.989 6 H 0.033 0.967 7 C -0.494 4.494 8 H 0.077 0.923 9 C 0.073 3.927 10 N -0.900 5.900 11 Si 0.868 3.132 12 H -0.279 1.279 13 H -0.265 1.265 14 H -0.290 1.290 15 C -0.066 4.066 16 H 0.023 0.977 17 C -0.100 4.100 18 C 0.079 3.921 19 N -0.564 5.564 20 C 0.033 3.967 21 C 0.073 3.927 22 C -0.109 4.109 23 C 0.104 3.896 24 H 0.022 0.978 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.014 0.986 28 H 0.020 0.980 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.262 0.738 33 H 0.104 0.896 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.020 0.980 37 H 0.017 0.983 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.036 0.964 42 H 0.087 0.913 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.498 -5.654 0.449 13.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.261 5.261 3 C -0.072 4.072 4 C -0.137 4.137 5 C -0.008 4.008 6 H 0.051 0.949 7 C -0.532 4.532 8 H 0.095 0.905 9 C -0.129 4.129 10 N -0.538 5.538 11 Si 0.697 3.303 12 H -0.205 1.205 13 H -0.191 1.191 14 H -0.217 1.217 15 C -0.085 4.085 16 H 0.041 0.959 17 C -0.138 4.138 18 C -0.049 4.049 19 N -0.289 5.289 20 C -0.115 4.115 21 C -0.055 4.055 22 C -0.147 4.147 23 C -0.004 4.004 24 H 0.040 0.960 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.033 0.967 28 H 0.038 0.962 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.039 0.961 37 H 0.036 0.964 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.054 0.946 42 H 0.105 0.895 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.296 -5.848 1.169 13.666 hybrid contribution -0.308 0.438 -2.806 2.857 sum -12.603 -5.410 -1.637 13.813 Atomic orbital electron populations 1.22385 0.88977 1.01688 0.99426 1.61881 1.05892 1.13735 1.44587 1.22195 0.97946 0.88302 0.98743 1.21635 0.91017 1.00204 1.00802 1.19276 0.96020 0.90947 0.94598 0.94900 1.20895 0.88424 1.48583 0.95255 0.90458 1.25008 0.94658 0.94748 0.98453 1.69905 1.02230 1.51099 1.30599 0.87018 0.79055 0.78590 0.85639 1.20456 1.19073 1.21689 1.19628 0.90346 0.99081 0.99447 0.95881 1.20258 1.03343 0.91898 0.98278 1.21084 0.88613 0.96193 0.99004 1.58819 1.11475 1.02659 1.55966 1.22305 1.01209 0.90057 0.97973 1.21435 0.93411 0.96227 0.94443 1.21750 0.96915 0.93991 1.02065 1.21579 0.96004 0.92637 0.90147 0.96021 0.91453 0.92148 0.96716 0.96152 0.92082 0.91828 0.92623 0.92792 0.87819 0.92741 0.91171 0.96150 0.96424 0.91769 0.92191 0.92039 0.94552 0.89468 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.06 60.06 0.54 0.87 16 2 N -0.54 -9.12 4.69 -235.42 -1.10 -10.23 16 3 C 0.06 0.98 5.46 -3.83 -0.02 0.96 16 4 C -0.10 -2.00 5.41 -26.52 -0.14 -2.15 16 5 C 0.01 0.25 1.71 -92.05 -0.16 0.09 16 6 H 0.03 0.80 5.13 -51.93 -0.27 0.54 16 7 C -0.49 -13.17 6.74 -34.44 -0.23 -13.40 16 8 H 0.08 2.24 7.62 -52.49 -0.40 1.84 16 9 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 10 N -0.90 -26.84 13.96 55.43 0.77 -26.06 16 11 Si 0.87 21.58 26.56 -169.99 -4.52 17.06 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.41 6.05 56.52 0.34 -6.06 16 14 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 15 C -0.07 -1.36 1.23 -94.65 -0.12 -1.48 16 16 H 0.02 0.52 4.73 -51.93 -0.25 0.27 16 17 C -0.10 -2.05 4.71 -29.77 -0.14 -2.19 16 18 C 0.08 1.46 5.18 -6.91 -0.04 1.43 16 19 N -0.56 -9.13 4.15 -249.35 -1.03 -10.17 16 20 C 0.03 0.43 9.41 60.07 0.57 1.00 16 21 C 0.07 1.13 5.24 -5.14 -0.03 1.10 16 22 C -0.11 -1.68 3.84 -26.86 -0.10 -1.78 16 23 C 0.10 1.88 1.90 -68.15 -0.13 1.75 16 24 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 25 H 0.07 0.84 6.36 -51.93 -0.33 0.51 16 26 H 0.06 0.74 8.07 -51.93 -0.42 0.33 16 27 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.95 8.06 -51.93 -0.42 0.53 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.10 2.42 5.39 -51.93 -0.28 2.14 16 34 H 0.05 1.10 7.78 -51.93 -0.40 0.69 16 35 H 0.07 1.22 7.88 -51.93 -0.41 0.81 16 36 H 0.02 0.42 7.69 -51.93 -0.40 0.02 16 37 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.06 0.80 7.93 -51.93 -0.41 0.38 16 39 H 0.06 0.69 7.95 -51.93 -0.41 0.27 16 40 H 0.06 0.81 7.58 -51.93 -0.39 0.42 16 41 H 0.04 0.63 6.48 -51.93 -0.34 0.30 16 42 H 0.09 1.43 7.81 -51.93 -0.41 1.02 16 43 H 0.05 0.72 7.12 -51.93 -0.37 0.36 16 LS Contribution 305.74 15.07 4.61 4.61 Total: -1.00 -28.40 305.74 -9.00 -37.40 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -7.63 Total: -0.74 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -0.09 Total: -11.87 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: -1.36 Total: -46.46 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.52 Total: 17.06 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.40 -9.00 -37.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260656226.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.199 kcal (2) G-P(sol) polarization free energy of solvation -28.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds