Wall clock time and date at job start Mon Mar 30 2020 04:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46714 * 111.00184 * 2 1 4 4 C 1.53182 * 109.19843 * 173.21812 * 3 2 1 5 5 C 1.53217 * 108.63510 * 61.52062 * 4 3 2 6 6 H 1.09000 * 109.40933 * 63.52041 * 5 4 3 7 7 C 1.50697 * 109.43493 * 183.42444 * 5 4 3 8 8 H 1.08001 * 120.00494 * 34.99061 * 7 5 4 9 9 C 1.37880 * 119.99721 * 214.98421 * 7 5 4 10 10 N 1.31521 * 119.99780 * 175.01199 * 9 7 5 11 11 Si 1.86795 * 120.00243 * 355.28858 * 9 7 5 12 12 H 1.48499 * 109.47299 * 275.02332 * 11 9 7 13 13 H 1.48505 * 109.47074 * 35.01759 * 11 9 7 14 14 H 1.48503 * 109.47426 * 155.01924 * 11 9 7 15 15 C 1.52232 * 109.65833 * 303.47942 * 5 4 3 16 16 H 1.08999 * 102.37145 * 162.74255 * 15 5 4 17 17 C 1.48170 * 113.90663 * 272.46543 * 15 5 4 18 18 C 1.51642 * 113.64770 * 224.51953 * 17 15 5 19 19 N 1.42335 * 108.74883 * 287.07908 * 18 17 15 20 20 C 1.46904 * 110.99824 * 191.01011 * 19 18 17 21 21 C 1.46047 * 116.14609 * 62.98183 * 19 18 17 22 22 C 1.51302 * 110.21388 * 273.57335 * 21 19 18 23 23 C 1.47137 * 111.00283 * 235.10470 * 2 1 3 24 24 H 1.09009 * 108.61141 * 62.29804 * 23 2 1 25 25 H 1.08998 * 109.47326 * 184.89012 * 1 2 3 26 26 H 1.08994 * 109.46945 * 304.89294 * 1 2 3 27 27 H 1.09000 * 109.46897 * 64.89450 * 1 2 3 28 28 H 1.08999 * 109.51785 * 293.13409 * 3 2 1 29 29 H 1.09005 * 109.51727 * 53.24745 * 3 2 1 30 30 H 1.08998 * 109.60811 * 301.77159 * 4 3 2 31 31 H 1.09004 * 109.60803 * 181.26357 * 4 3 2 32 32 H 0.97000 * 119.99367 * 180.02562 * 10 9 7 33 33 H 1.08997 * 108.89364 * 345.84303 * 17 15 5 34 34 H 1.08995 * 108.89868 * 104.33929 * 17 15 5 35 35 H 1.08997 * 109.89949 * 167.12332 * 18 17 15 36 36 H 1.08993 * 109.31633 * 46.68478 * 18 17 15 37 37 H 1.09002 * 109.46928 * 293.19218 * 20 19 18 38 38 H 1.09001 * 109.46924 * 53.18465 * 20 19 18 39 39 H 1.08994 * 109.47178 * 173.19083 * 20 19 18 40 40 H 1.09004 * 109.34898 * 153.35185 * 21 19 18 41 41 H 1.08994 * 109.34815 * 33.80609 * 21 19 18 42 42 H 1.08998 * 109.43087 * 332.94483 * 22 21 19 43 43 H 1.09001 * 109.43123 * 213.09351 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9948 1.3697 0.0000 4 6 3.5164 1.3251 0.1708 5 6 4.1202 0.5655 -1.0149 6 1 3.9189 1.1125 -1.9359 7 6 5.6093 0.4377 -0.8227 8 1 6.0168 0.3082 0.1691 9 6 6.4518 0.4858 -1.9131 10 7 7.7552 0.4731 -1.7381 11 14 5.7420 0.5770 -3.6386 12 1 5.4303 -0.7933 -4.1186 13 1 4.4991 1.3896 -3.6202 14 1 6.7320 1.2071 -4.5486 15 6 3.4998 -0.8219 -1.1037 16 1 3.7513 -1.1255 -2.1199 17 6 4.1943 -1.8436 -0.2856 18 6 4.4110 -3.1582 -1.0098 19 7 3.1623 -3.8329 -1.1168 20 6 3.3492 -5.2171 -1.5718 21 6 2.1317 -3.1586 -1.9016 22 6 1.3616 -2.1899 -1.0310 23 6 1.9963 -0.7858 -1.1266 24 1 1.6727 -0.3199 -2.0575 25 1 -0.3634 -1.0239 0.0876 26 1 -0.3633 0.5878 0.8429 27 1 -0.3633 0.4360 -0.9306 28 1 1.7485 1.8543 -0.9447 29 1 1.5514 1.9300 0.8232 30 1 3.7654 0.8115 1.0994 31 1 3.9118 2.3406 0.1942 32 1 8.3479 0.5073 -2.5053 33 1 5.1631 -1.4504 0.0224 34 1 3.5991 -2.0476 0.6043 35 1 5.1142 -3.7772 -0.4526 36 1 4.8058 -2.9601 -2.0062 37 1 3.7186 -5.2157 -2.5974 38 1 4.0711 -5.7174 -0.9264 39 1 2.3967 -5.7452 -1.5295 40 1 1.4456 -3.9005 -2.3102 41 1 2.6004 -2.6136 -2.7209 42 1 1.3902 -2.5310 0.0039 43 1 0.3262 -2.1435 -1.3682 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260656226.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:04 Heat of formation + Delta-G solvation = -3.537246 kcal Electronic energy + Delta-G solvation = -20823.587407 eV Core-core repulsion = 18095.819717 eV Total energy + Delta-G solvation = -2727.767691 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.38220 -38.56109 -36.31492 -33.99733 -33.77106 -32.08190 -29.27091 -28.47247 -25.93160 -25.62559 -25.20033 -22.87880 -22.08239 -21.17450 -19.19545 -18.84078 -17.17592 -16.81423 -16.50238 -16.09499 -15.90340 -15.51969 -15.19765 -14.86948 -14.54965 -14.49421 -13.95937 -13.77582 -13.55989 -13.11630 -12.97956 -12.93337 -12.68368 -12.56302 -12.41462 -12.35821 -12.03528 -11.90418 -11.80979 -11.45431 -11.33645 -10.91728 -10.82402 -10.54124 -10.43012 -9.11315 -9.08643 -8.27456 -6.24636 1.23834 1.25774 1.33568 2.29949 2.99671 3.03642 3.17870 3.84127 3.88001 4.03994 4.26482 4.27327 4.33680 4.34780 4.47911 4.48973 4.58737 4.67094 4.69327 4.71595 4.76845 4.80356 4.84634 4.86573 4.98086 5.02696 5.10739 5.13544 5.16953 5.22961 5.37135 5.40204 5.48714 5.65872 5.70622 5.78632 5.94368 6.27998 6.32949 6.36941 6.39471 6.46693 6.78980 7.36519 8.89099 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016441 B = 0.011358 C = 0.007976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.631232 B = 2464.597679 C = 3509.745597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.547 5.547 3 C 0.063 3.937 4 C -0.096 4.096 5 C 0.007 3.993 6 H 0.022 0.978 7 C -0.481 4.481 8 H 0.041 0.959 9 C 0.019 3.981 10 N -0.947 5.947 11 Si 0.922 3.078 12 H -0.277 1.277 13 H -0.252 1.252 14 H -0.288 1.288 15 C -0.054 4.054 16 H -0.001 1.001 17 C -0.090 4.090 18 C 0.089 3.911 19 N -0.568 5.568 20 C 0.032 3.968 21 C 0.069 3.931 22 C -0.098 4.098 23 C 0.104 3.896 24 H 0.016 0.984 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.021 0.979 28 H 0.020 0.980 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.262 0.738 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.077 0.923 36 H -0.007 1.007 37 H 0.015 0.985 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.013 0.987 42 H 0.082 0.918 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.005 -6.635 0.164 17.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.065 4.065 4 C -0.134 4.134 5 C -0.012 4.012 6 H 0.040 0.960 7 C -0.519 4.519 8 H 0.059 0.941 9 C -0.178 4.178 10 N -0.588 5.588 11 Si 0.749 3.251 12 H -0.202 1.202 13 H -0.176 1.176 14 H -0.215 1.215 15 C -0.073 4.073 16 H 0.017 0.983 17 C -0.127 4.127 18 C -0.040 4.040 19 N -0.293 5.293 20 C -0.116 4.116 21 C -0.058 4.058 22 C -0.136 4.136 23 C -0.005 4.005 24 H 0.034 0.966 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.011 0.989 37 H 0.034 0.966 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.032 0.968 42 H 0.101 0.899 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.839 -6.833 0.889 17.273 hybrid contribution 0.797 0.732 -2.608 2.823 sum -15.042 -6.101 -1.718 16.323 Atomic orbital electron populations 1.22475 0.86193 1.03191 1.00477 1.61860 1.08351 1.13051 1.43902 1.22093 0.95339 0.89266 0.99802 1.21525 0.93776 0.99263 0.98833 1.19268 0.93802 0.92917 0.95258 0.96023 1.21071 0.90709 1.46660 0.93485 0.94097 1.25676 0.94830 0.95158 1.02097 1.70036 1.03579 1.53610 1.31552 0.86130 0.78822 0.78754 0.81390 1.20239 1.17647 1.21451 1.19517 0.92878 0.97100 0.97830 0.98268 1.20083 1.01083 0.92865 0.98699 1.20875 0.90247 0.95622 0.97216 1.58819 1.10080 1.03831 1.56524 1.22408 1.02979 0.88328 0.97863 1.21557 0.93544 0.97006 0.93727 1.21693 0.98227 0.91788 1.01858 1.21477 0.93675 0.94869 0.90442 0.96608 0.89889 0.90513 0.96066 0.96189 0.89403 0.92922 0.93038 0.92876 0.91750 0.92345 0.90470 0.98915 0.96636 0.91136 0.89506 0.88743 0.96833 0.89910 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.06 127.69 1.16 1.71 16 2 N -0.55 -17.03 4.69 -898.74 -4.21 -21.24 16 3 C 0.06 2.06 5.46 86.40 0.47 2.53 16 4 C -0.10 -3.90 5.41 30.73 0.17 -3.73 16 5 C 0.01 0.31 1.71 -11.72 -0.02 0.29 16 6 H 0.02 1.06 5.13 -2.39 -0.01 1.05 16 7 C -0.48 -26.89 6.74 25.60 0.17 -26.72 16 8 H 0.04 2.53 7.62 -2.91 -0.02 2.51 16 9 C 0.02 1.11 5.47 84.65 0.46 1.58 16 10 N -0.95 -59.01 13.96 21.45 0.30 -58.71 16 11 Si 0.92 45.62 26.56 68.60 1.82 47.44 16 12 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 13 H -0.25 -11.80 6.05 99.48 0.60 -11.20 16 14 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 15 C -0.05 -2.24 1.23 -13.41 -0.02 -2.26 16 16 H 0.00 -0.05 4.73 -2.39 -0.01 -0.06 16 17 C -0.09 -3.73 4.71 28.63 0.13 -3.60 16 18 C 0.09 3.32 5.18 86.70 0.45 3.77 16 19 N -0.57 -17.26 4.15 -942.81 -3.91 -21.17 16 20 C 0.03 0.75 9.41 127.69 1.20 1.95 16 21 C 0.07 1.95 5.24 85.91 0.45 2.41 16 22 C -0.10 -2.66 3.84 30.51 0.12 -2.54 16 23 C 0.10 3.52 1.90 44.50 0.08 3.60 16 24 H 0.02 0.56 8.14 -2.38 -0.02 0.55 16 25 H 0.08 1.66 6.36 -2.39 -0.02 1.64 16 26 H 0.08 1.53 8.07 -2.39 -0.02 1.51 16 27 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.09 2.43 8.06 -2.38 -0.02 2.41 16 30 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.26 15.49 8.31 -92.71 -0.77 14.71 16 33 H 0.06 3.18 5.39 -2.39 -0.01 3.16 16 34 H 0.06 2.35 7.78 -2.39 -0.02 2.33 16 35 H 0.08 2.72 7.88 -2.39 -0.02 2.70 16 36 H -0.01 -0.31 7.69 -2.39 -0.02 -0.33 16 37 H 0.02 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.07 1.58 7.93 -2.39 -0.02 1.56 16 39 H 0.09 1.63 7.95 -2.39 -0.02 1.61 16 40 H 0.09 2.06 7.58 -2.38 -0.02 2.05 16 41 H 0.01 0.45 6.48 -2.39 -0.02 0.43 16 42 H 0.08 2.39 7.81 -2.39 -0.02 2.37 16 43 H 0.09 1.84 7.12 -2.39 -0.02 1.83 16 Total: -1.00 -63.99 305.74 -0.31 -64.30 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.85 Total: 10.40 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 4.83 Total: -21.02 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -7.82 Total: -101.12 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.82 Total: 47.44 kcal Total: -63.99 -0.31 -64.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260656226.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.764 kcal (2) G-P(sol) polarization free energy of solvation -63.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds