Wall clock time and date at job start Mon Mar 30 2020 04:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46675 * 111.00423 * 2 1 4 4 C 1.51145 * 111.10496 * 186.78968 * 3 2 1 5 5 C 1.49480 * 117.07967 * 331.12159 * 4 3 2 6 6 H 1.09000 * 107.22609 * 125.07193 * 5 4 3 7 7 C 1.50699 * 107.23226 * 239.46198 * 5 4 3 8 8 H 1.07999 * 120.00045 * 55.84459 * 7 5 4 9 9 C 1.37873 * 119.99790 * 235.85034 * 7 5 4 10 10 N 1.31521 * 119.99749 * 179.97438 * 9 7 5 11 11 Si 1.86799 * 120.00476 * 359.97438 * 9 7 5 12 12 H 1.48498 * 109.47004 * 89.99833 * 11 9 7 13 13 H 1.48496 * 109.46932 * 210.00343 * 11 9 7 14 14 H 1.48503 * 109.46777 * 329.99761 * 11 9 7 15 15 C 1.49369 * 120.42467 * 2.27038 * 5 4 3 16 16 H 1.08994 * 108.16890 * 110.67436 * 15 5 4 17 17 C 1.50477 * 113.40237 * 230.46585 * 15 5 4 18 18 C 1.51596 * 114.08752 * 185.47979 * 17 15 5 19 19 N 1.44814 * 112.36507 * 274.90922 * 18 17 15 20 20 C 1.46898 * 110.99967 * 216.83446 * 19 18 17 21 21 C 1.49958 * 110.97197 * 92.89717 * 19 18 17 22 22 C 1.52861 * 109.84700 * 330.43313 * 21 19 18 23 23 C 1.46640 * 111.00206 * 121.15601 * 2 1 3 24 24 H 1.08993 * 112.16834 * 290.22811 * 23 2 1 25 25 H 1.08997 * 109.47162 * 51.73284 * 1 2 3 26 26 H 1.09001 * 109.47445 * 171.73962 * 1 2 3 27 27 H 1.09002 * 109.46849 * 291.73935 * 1 2 3 28 28 H 1.08998 * 109.15671 * 66.36781 * 3 2 1 29 29 H 1.09004 * 109.15192 * 307.20066 * 3 2 1 30 30 H 1.08998 * 107.93236 * 93.04461 * 4 3 2 31 31 H 1.08998 * 107.92376 * 209.20690 * 4 3 2 32 32 H 0.97006 * 120.00027 * 179.97438 * 10 9 7 33 33 H 1.09001 * 108.55607 * 306.67057 * 17 15 5 34 34 H 1.08998 * 108.55898 * 64.28928 * 17 15 5 35 35 H 1.09003 * 108.90464 * 35.64949 * 18 17 15 36 36 H 1.09000 * 108.90298 * 154.26060 * 18 17 15 37 37 H 1.08998 * 109.47240 * 59.99562 * 20 19 18 38 38 H 1.08998 * 109.46894 * 180.02562 * 20 19 18 39 39 H 1.09007 * 109.46690 * 299.99638 * 20 19 18 40 40 H 1.08997 * 109.40897 * 90.55314 * 21 19 18 41 41 H 1.09002 * 109.40417 * 210.32283 * 21 19 18 42 42 H 1.09003 * 109.38642 * 63.07676 * 22 21 19 43 43 H 1.09000 * 109.38605 * 182.86898 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9947 1.3693 0.0000 4 6 3.4969 1.3755 -0.1667 5 6 4.2434 0.1867 0.3469 6 1 4.8371 -0.2036 -0.4798 7 6 5.2162 0.6845 1.3846 8 1 4.8595 1.2550 2.2295 9 6 6.5615 0.4118 1.2554 10 7 7.4105 0.8468 2.1608 11 14 7.1784 -0.5754 -0.2055 12 1 7.5119 0.3467 -1.3207 13 1 8.3917 -1.3358 0.1879 14 1 6.1219 -1.5219 -0.6448 15 6 3.5083 -0.9669 0.9469 16 1 3.5977 -1.8162 0.2696 17 6 4.0442 -1.3838 2.2898 18 6 3.3966 -2.6332 2.8536 19 7 2.1703 -2.3440 3.5675 20 6 2.0272 -3.2145 4.7421 21 6 0.9811 -2.4635 2.6619 22 6 1.3853 -2.1249 1.2271 23 6 1.9945 -0.7083 1.1715 24 1 1.8161 -0.1611 2.0971 25 1 -0.3633 0.6364 -0.8068 26 1 -0.3634 -1.0170 -0.1476 27 1 -0.3633 0.3806 0.9546 28 1 1.7375 1.8511 0.9433 29 1 1.5416 1.9263 -0.8202 30 1 3.7162 1.4758 -1.2297 31 1 3.8867 2.2598 0.3373 32 1 8.3570 0.6546 2.0702 33 1 5.1157 -1.5605 2.1960 34 1 3.8910 -0.5658 2.9936 35 1 3.1752 -3.3168 2.0339 36 1 4.0958 -3.1159 3.5364 37 1 2.8694 -3.0570 5.4159 38 1 1.0979 -2.9765 5.2596 39 1 2.0079 -4.2563 4.4220 40 1 0.5983 -3.4834 2.6993 41 1 0.2041 -1.7739 2.9916 42 1 2.1212 -2.8492 0.8780 43 1 0.5057 -2.1644 0.5845 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260656230.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:07 Heat of formation + Delta-G solvation = 29.208779 kcal Electronic energy + Delta-G solvation = -20763.488754 eV Core-core repulsion = 18037.141037 eV Total energy + Delta-G solvation = -2726.347716 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.83962 -37.03821 -34.81838 -32.55903 -31.66351 -30.37491 -27.94152 -27.01614 -24.40180 -24.03370 -23.60471 -21.34651 -20.81085 -18.85898 -18.06229 -16.76706 -15.96807 -15.32129 -14.89152 -14.51976 -14.12465 -13.95104 -13.82175 -13.34318 -13.01844 -12.61808 -12.49247 -12.39371 -12.06910 -11.82347 -11.45154 -11.25252 -11.15425 -10.92600 -10.82908 -10.62271 -10.56780 -10.45675 -9.97186 -9.89934 -9.57329 -9.38673 -8.76646 -8.44941 -8.34579 -7.91207 -7.73061 -5.96347 -3.89916 3.33661 3.42782 3.45729 4.19700 4.50423 4.51145 5.17597 5.20870 5.35261 5.38933 5.45098 5.49251 5.56094 5.65162 5.69277 5.79023 5.83302 5.88995 5.94358 5.98823 6.08106 6.12546 6.15939 6.20971 6.29727 6.40414 6.49012 6.62359 6.72249 6.82172 6.95660 7.00616 7.13129 7.35866 7.47461 7.53613 7.61911 7.73929 7.76066 7.89673 7.99227 8.64714 9.07889 9.66475 11.17494 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018536 B = 0.010096 C = 0.007421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.203037 B = 2772.628793 C = 3772.351713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.527 5.527 3 C 0.061 3.939 4 C -0.090 4.090 5 C 0.010 3.990 6 H 0.028 0.972 7 C -0.497 4.497 8 H 0.072 0.928 9 C 0.066 3.934 10 N -0.907 5.907 11 Si 0.869 3.131 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.263 1.263 15 C -0.038 4.038 16 H 0.037 0.963 17 C -0.089 4.089 18 C 0.050 3.950 19 N -0.538 5.538 20 C 0.028 3.972 21 C 0.055 3.945 22 C -0.136 4.136 23 C 0.087 3.913 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.020 0.980 28 H 0.025 0.975 29 H 0.058 0.942 30 H 0.036 0.964 31 H 0.066 0.934 32 H 0.260 0.740 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.035 0.965 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.018 0.982 40 H 0.033 0.967 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.822 -6.287 -0.816 14.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.251 5.251 3 C -0.067 4.067 4 C -0.128 4.128 5 C -0.010 4.010 6 H 0.047 0.953 7 C -0.535 4.535 8 H 0.090 0.910 9 C -0.134 4.134 10 N -0.546 5.546 11 Si 0.698 3.302 12 H -0.206 1.206 13 H -0.219 1.219 14 H -0.188 1.188 15 C -0.057 4.057 16 H 0.055 0.945 17 C -0.128 4.128 18 C -0.078 4.078 19 N -0.264 5.264 20 C -0.120 4.120 21 C -0.072 4.072 22 C -0.173 4.173 23 C -0.021 4.021 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.039 0.961 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.036 0.964 40 H 0.051 0.949 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.402 -6.053 -1.052 13.841 hybrid contribution 0.187 -0.979 -0.269 1.033 sum -12.215 -7.033 -1.321 14.156 Atomic orbital electron populations 1.22435 0.89448 1.01446 0.99649 1.62751 1.06045 1.15163 1.41162 1.21771 0.97331 0.88587 0.99056 1.20630 0.91769 1.00876 0.99555 1.17704 0.95090 0.91734 0.96427 0.95331 1.21195 0.90670 1.33488 1.08180 0.90963 1.25054 0.96894 0.95771 0.95676 1.69907 1.02710 1.47066 1.34914 0.86966 0.78116 0.81268 0.83885 1.20582 1.21910 1.18810 1.20486 0.91442 0.98049 0.95751 0.94458 1.20815 0.99452 0.95662 0.96847 1.21774 0.90405 0.98977 0.96661 1.62324 1.02397 1.53598 1.08043 1.22409 1.02138 0.93825 0.93666 1.22721 0.92992 0.98840 0.92628 1.22550 1.01491 0.98017 0.95251 1.22605 0.96418 0.92308 0.90818 0.91880 0.92243 0.91562 0.96140 0.95709 0.92361 0.94526 0.91500 0.93018 0.91072 0.90760 0.94726 0.92618 0.91421 0.92042 0.96376 0.94857 0.91439 0.90971 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.07 60.06 0.54 0.80 16 2 N -0.53 -8.99 4.81 -234.23 -1.13 -10.11 16 3 C 0.06 1.07 5.42 -4.88 -0.03 1.04 16 4 C -0.09 -1.87 5.60 -29.40 -0.16 -2.04 16 5 C 0.01 0.22 2.34 -95.30 -0.22 0.00 16 6 H 0.03 0.70 4.32 -51.93 -0.22 0.47 16 7 C -0.50 -13.29 5.60 -34.44 -0.19 -13.49 16 8 H 0.07 2.14 7.83 -52.49 -0.41 1.73 16 9 C 0.07 1.84 4.88 -17.82 -0.09 1.76 16 10 N -0.91 -27.28 13.96 55.43 0.77 -26.50 16 11 Si 0.87 21.57 27.16 -169.99 -4.62 16.96 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 14 H -0.26 -6.31 6.46 56.52 0.37 -5.94 16 15 C -0.04 -0.79 2.16 -92.50 -0.20 -0.99 16 16 H 0.04 0.78 7.03 -51.93 -0.37 0.42 16 17 C -0.09 -1.87 3.55 -28.70 -0.10 -1.97 16 18 C 0.05 0.86 5.08 -5.65 -0.03 0.83 16 19 N -0.54 -8.46 4.71 -242.94 -1.14 -9.61 16 20 C 0.03 0.36 9.20 60.06 0.55 0.92 16 21 C 0.06 0.77 5.73 -2.18 -0.01 0.76 16 22 C -0.14 -2.04 4.86 -26.12 -0.13 -2.17 16 23 C 0.09 1.54 1.69 -66.00 -0.11 1.43 16 24 H 0.06 1.24 7.38 -51.93 -0.38 0.86 16 25 H 0.06 0.73 7.99 -51.93 -0.42 0.31 16 26 H 0.07 0.81 5.98 -51.93 -0.31 0.50 16 27 H 0.02 0.27 8.11 -51.93 -0.42 -0.15 16 28 H 0.02 0.45 8.04 -51.93 -0.42 0.03 16 29 H 0.06 0.91 7.99 -51.93 -0.42 0.50 16 30 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 31 H 0.07 1.46 7.30 -51.93 -0.38 1.09 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.07 1.67 6.90 -51.93 -0.36 1.32 16 34 H 0.07 1.73 7.20 -51.93 -0.37 1.36 16 35 H 0.03 0.58 5.62 -51.93 -0.29 0.28 16 36 H 0.06 0.93 7.55 -51.93 -0.39 0.53 16 37 H 0.07 0.87 8.04 -51.93 -0.42 0.45 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.03 0.42 7.87 -51.93 -0.41 0.01 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 1.16 4.85 -51.93 -0.25 0.90 16 43 H 0.07 0.98 5.35 -51.93 -0.28 0.70 16 LS Contribution 302.74 15.07 4.56 4.56 Total: -1.00 -28.80 302.74 -9.10 -37.91 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -7.38 Total: -0.08 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -0.18 Total: -13.12 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: -1.50 Total: -46.23 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.62 Total: 16.96 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.80 -9.10 -37.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260656230.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.117 kcal (2) G-P(sol) polarization free energy of solvation -28.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds