Wall clock time and date at job start Mon Mar 30 2020 04:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46675 * 111.00423 * 2 1 4 4 C 1.51145 * 111.10496 * 186.78968 * 3 2 1 5 5 C 1.49480 * 117.07967 * 331.12159 * 4 3 2 6 6 H 1.09000 * 107.22609 * 125.07193 * 5 4 3 7 7 C 1.50699 * 107.23226 * 239.46198 * 5 4 3 8 8 H 1.07999 * 120.00045 * 55.84459 * 7 5 4 9 9 C 1.37873 * 119.99790 * 235.85034 * 7 5 4 10 10 N 1.31521 * 119.99749 * 179.97438 * 9 7 5 11 11 Si 1.86799 * 120.00476 * 359.97438 * 9 7 5 12 12 H 1.48498 * 109.47004 * 89.99833 * 11 9 7 13 13 H 1.48496 * 109.46932 * 210.00343 * 11 9 7 14 14 H 1.48503 * 109.46777 * 329.99761 * 11 9 7 15 15 C 1.49369 * 120.42467 * 2.27038 * 5 4 3 16 16 H 1.08994 * 108.16890 * 110.67436 * 15 5 4 17 17 C 1.50477 * 113.40237 * 230.46585 * 15 5 4 18 18 C 1.51596 * 114.08752 * 185.47979 * 17 15 5 19 19 N 1.44814 * 112.36507 * 274.90922 * 18 17 15 20 20 C 1.46898 * 110.99967 * 216.83446 * 19 18 17 21 21 C 1.49958 * 110.97197 * 92.89717 * 19 18 17 22 22 C 1.52861 * 109.84700 * 330.43313 * 21 19 18 23 23 C 1.46640 * 111.00206 * 121.15601 * 2 1 3 24 24 H 1.08993 * 112.16834 * 290.22811 * 23 2 1 25 25 H 1.08997 * 109.47162 * 51.73284 * 1 2 3 26 26 H 1.09001 * 109.47445 * 171.73962 * 1 2 3 27 27 H 1.09002 * 109.46849 * 291.73935 * 1 2 3 28 28 H 1.08998 * 109.15671 * 66.36781 * 3 2 1 29 29 H 1.09004 * 109.15192 * 307.20066 * 3 2 1 30 30 H 1.08998 * 107.93236 * 93.04461 * 4 3 2 31 31 H 1.08998 * 107.92376 * 209.20690 * 4 3 2 32 32 H 0.97006 * 120.00027 * 179.97438 * 10 9 7 33 33 H 1.09001 * 108.55607 * 306.67057 * 17 15 5 34 34 H 1.08998 * 108.55898 * 64.28928 * 17 15 5 35 35 H 1.09003 * 108.90464 * 35.64949 * 18 17 15 36 36 H 1.09000 * 108.90298 * 154.26060 * 18 17 15 37 37 H 1.08998 * 109.47240 * 59.99562 * 20 19 18 38 38 H 1.08998 * 109.46894 * 180.02562 * 20 19 18 39 39 H 1.09007 * 109.46690 * 299.99638 * 20 19 18 40 40 H 1.08997 * 109.40897 * 90.55314 * 21 19 18 41 41 H 1.09002 * 109.40417 * 210.32283 * 21 19 18 42 42 H 1.09003 * 109.38642 * 63.07676 * 22 21 19 43 43 H 1.09000 * 109.38605 * 182.86898 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9947 1.3693 0.0000 4 6 3.4969 1.3755 -0.1667 5 6 4.2434 0.1867 0.3469 6 1 4.8371 -0.2036 -0.4798 7 6 5.2162 0.6845 1.3846 8 1 4.8595 1.2550 2.2295 9 6 6.5615 0.4118 1.2554 10 7 7.4105 0.8468 2.1608 11 14 7.1784 -0.5754 -0.2055 12 1 7.5119 0.3467 -1.3207 13 1 8.3917 -1.3358 0.1879 14 1 6.1219 -1.5219 -0.6448 15 6 3.5083 -0.9669 0.9469 16 1 3.5977 -1.8162 0.2696 17 6 4.0442 -1.3838 2.2898 18 6 3.3966 -2.6332 2.8536 19 7 2.1703 -2.3440 3.5675 20 6 2.0272 -3.2145 4.7421 21 6 0.9811 -2.4635 2.6619 22 6 1.3853 -2.1249 1.2271 23 6 1.9945 -0.7083 1.1715 24 1 1.8161 -0.1611 2.0971 25 1 -0.3633 0.6364 -0.8068 26 1 -0.3634 -1.0170 -0.1476 27 1 -0.3633 0.3806 0.9546 28 1 1.7375 1.8511 0.9433 29 1 1.5416 1.9263 -0.8202 30 1 3.7162 1.4758 -1.2297 31 1 3.8867 2.2598 0.3373 32 1 8.3570 0.6546 2.0702 33 1 5.1157 -1.5605 2.1960 34 1 3.8910 -0.5658 2.9936 35 1 3.1752 -3.3168 2.0339 36 1 4.0958 -3.1159 3.5364 37 1 2.8694 -3.0570 5.4159 38 1 1.0979 -2.9765 5.2596 39 1 2.0079 -4.2563 4.4220 40 1 0.5983 -3.4834 2.6993 41 1 0.2041 -1.7739 2.9916 42 1 2.1212 -2.8492 0.8780 43 1 0.5057 -2.1644 0.5845 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260656230.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:07 Heat of formation + Delta-G solvation = 8.886455 kcal Electronic energy + Delta-G solvation = -20764.369996 eV Core-core repulsion = 18037.141037 eV Total energy + Delta-G solvation = -2727.228958 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.30093 -38.36205 -36.49006 -34.04961 -33.63688 -31.76278 -29.43943 -28.40811 -25.84507 -25.42970 -25.18304 -22.80685 -22.34846 -20.21056 -19.86901 -18.70574 -17.29825 -16.82679 -16.23514 -16.07974 -15.73356 -15.28052 -15.22594 -14.88353 -14.60572 -14.47432 -13.88227 -13.62633 -13.43895 -13.13514 -12.88390 -12.80184 -12.68596 -12.56536 -12.30831 -12.10056 -11.97576 -11.91884 -11.72981 -11.59893 -11.40635 -11.03782 -10.58471 -10.45715 -10.24746 -9.16802 -9.03526 -8.18482 -6.14188 1.33233 1.35873 1.45987 2.39521 3.00878 3.20041 3.22345 3.86583 3.94713 4.04694 4.19469 4.20680 4.33172 4.41386 4.50689 4.52668 4.63115 4.65567 4.69882 4.73652 4.75100 4.80037 4.84482 4.94765 4.95828 5.01673 5.05092 5.15735 5.21028 5.25967 5.32414 5.44938 5.49199 5.64335 5.74857 5.94501 6.10962 6.22061 6.28160 6.30274 6.41885 6.45121 6.86453 7.44209 8.99297 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018536 B = 0.010096 C = 0.007421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.203037 B = 2772.628793 C = 3772.351713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.535 5.535 3 C 0.066 3.934 4 C -0.092 4.092 5 C 0.011 3.989 6 H 0.019 0.981 7 C -0.480 4.480 8 H 0.026 0.974 9 C 0.010 3.990 10 N -0.956 5.956 11 Si 0.929 3.071 12 H -0.273 1.273 13 H -0.292 1.292 14 H -0.247 1.247 15 C -0.044 4.044 16 H 0.041 0.959 17 C -0.075 4.075 18 C 0.061 3.939 19 N -0.562 5.562 20 C 0.030 3.970 21 C 0.059 3.941 22 C -0.128 4.128 23 C 0.097 3.903 24 H 0.040 0.960 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.023 0.977 28 H 0.016 0.984 29 H 0.087 0.913 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.260 0.740 33 H 0.033 0.967 34 H 0.036 0.964 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.033 0.967 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.656 -8.189 -2.396 17.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.259 5.259 3 C -0.062 4.062 4 C -0.130 4.130 5 C -0.008 4.008 6 H 0.037 0.963 7 C -0.519 4.519 8 H 0.045 0.955 9 C -0.185 4.185 10 N -0.598 5.598 11 Si 0.755 3.245 12 H -0.199 1.199 13 H -0.219 1.219 14 H -0.171 1.171 15 C -0.064 4.064 16 H 0.059 0.941 17 C -0.114 4.114 18 C -0.067 4.067 19 N -0.288 5.288 20 C -0.118 4.118 21 C -0.068 4.068 22 C -0.165 4.165 23 C -0.011 4.011 24 H 0.058 0.942 25 H 0.095 0.905 26 H 0.104 0.896 27 H 0.041 0.959 28 H 0.034 0.966 29 H 0.105 0.895 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.052 0.948 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.275 -7.961 -2.639 17.426 hybrid contribution 1.030 -0.297 0.298 1.112 sum -14.246 -8.258 -2.341 16.632 Atomic orbital electron populations 1.22532 0.86602 1.03199 1.00541 1.62724 1.08579 1.14237 1.40322 1.21662 0.94997 0.89728 0.99791 1.20516 0.94258 0.98580 0.99674 1.17813 0.94945 0.93271 0.94811 0.96271 1.21295 0.91489 1.31718 1.07362 0.95525 1.25780 0.97149 0.97163 0.98399 1.70059 1.02993 1.49444 1.37340 0.85994 0.77773 0.80182 0.80578 1.19909 1.21910 1.17086 1.20406 0.93926 0.96837 0.95198 0.94078 1.20618 0.97834 0.96372 0.96541 1.21494 0.91361 0.96661 0.97220 1.62196 1.02314 1.55172 1.09098 1.22434 1.02792 0.94144 0.92462 1.22753 0.92194 1.00511 0.91331 1.22472 1.02018 0.95379 0.96670 1.22347 0.94268 0.94230 0.90274 0.94183 0.90470 0.89618 0.95864 0.96604 0.89451 0.93335 0.93911 0.93154 0.94787 0.94566 0.93343 0.92506 0.92111 0.90289 0.94846 0.92325 0.90670 0.91589 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.07 127.69 1.16 1.59 16 2 N -0.53 -16.75 4.81 -894.97 -4.30 -21.05 16 3 C 0.07 2.24 5.42 85.74 0.46 2.71 16 4 C -0.09 -3.82 5.60 28.86 0.16 -3.66 16 5 C 0.01 0.51 2.34 -13.83 -0.03 0.47 16 6 H 0.02 0.92 4.32 -2.39 -0.01 0.91 16 7 C -0.48 -27.09 5.60 25.60 0.14 -26.94 16 8 H 0.03 1.70 7.83 -2.91 -0.02 1.68 16 9 C 0.01 0.59 4.88 84.65 0.41 1.00 16 10 N -0.96 -60.51 13.96 21.45 0.30 -60.21 16 11 Si 0.93 45.44 27.16 68.60 1.86 47.31 16 12 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 13 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 14 H -0.25 -11.32 6.46 99.48 0.64 -10.67 16 15 C -0.04 -1.84 2.16 -12.01 -0.03 -1.87 16 16 H 0.04 1.67 7.03 -2.39 -0.02 1.66 16 17 C -0.07 -3.24 3.55 29.32 0.10 -3.14 16 18 C 0.06 2.06 5.08 86.23 0.44 2.50 16 19 N -0.56 -16.72 4.71 -922.53 -4.34 -21.07 16 20 C 0.03 0.69 9.20 127.69 1.17 1.87 16 21 C 0.06 1.43 5.73 85.66 0.49 1.92 16 22 C -0.13 -3.43 4.86 30.99 0.15 -3.28 16 23 C 0.10 3.33 1.69 46.16 0.08 3.40 16 24 H 0.04 1.57 7.38 -2.39 -0.02 1.55 16 25 H 0.08 1.52 7.99 -2.39 -0.02 1.50 16 26 H 0.09 1.65 5.98 -2.39 -0.01 1.63 16 27 H 0.02 0.53 8.11 -2.39 -0.02 0.51 16 28 H 0.02 0.56 8.04 -2.39 -0.02 0.54 16 29 H 0.09 2.46 7.99 -2.38 -0.02 2.44 16 30 H 0.05 1.87 8.12 -2.39 -0.02 1.85 16 31 H 0.04 1.94 7.30 -2.39 -0.02 1.92 16 32 H 0.26 15.57 8.31 -92.70 -0.77 14.80 16 33 H 0.03 1.67 6.90 -2.39 -0.02 1.66 16 34 H 0.04 1.79 7.20 -2.39 -0.02 1.78 16 35 H 0.05 1.51 5.62 -2.39 -0.01 1.50 16 36 H 0.06 1.88 7.55 -2.39 -0.02 1.86 16 37 H 0.06 1.48 8.04 -2.39 -0.02 1.46 16 38 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.03 0.68 8.14 -2.38 -0.02 0.67 16 40 H 0.06 1.18 7.87 -2.39 -0.02 1.16 16 41 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.07 1.89 4.85 -2.39 -0.01 1.87 16 43 H 0.10 2.14 5.35 -2.39 -0.01 2.13 16 Total: -1.00 -65.79 302.74 -0.86 -66.64 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.91 Total: 11.82 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 4.72 Total: -23.43 kcal Atomic # 7 Polarization: -93.99 SS G_CDS: -8.35 Total: -102.33 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.86 Total: 47.31 kcal Total: -65.79 -0.86 -66.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260656230.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.529 kcal (2) G-P(sol) polarization free energy of solvation -65.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds