Wall clock time and date at job start Mon Mar 30 2020 04:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46132 * 110.99822 * 2 1 4 4 C 1.52280 * 107.82966 * 189.54577 * 3 2 1 5 5 C 1.52491 * 108.14463 * 296.79202 * 4 3 2 6 6 H 1.09001 * 108.98853 * 298.60412 * 5 4 3 7 7 C 1.50691 * 109.04902 * 179.66578 * 5 4 3 8 8 H 1.07995 * 120.00050 * 243.24714 * 7 5 4 9 9 C 1.37884 * 119.99955 * 62.97130 * 7 5 4 10 10 N 1.31517 * 119.99697 * 7.59615 * 9 7 5 11 11 Si 1.86801 * 119.99989 * 187.59063 * 9 7 5 12 12 H 1.48509 * 109.46833 * 94.75569 * 11 9 7 13 13 H 1.48498 * 109.47345 * 214.75534 * 11 9 7 14 14 H 1.48500 * 109.47301 * 334.76114 * 11 9 7 15 15 C 1.52966 * 111.61805 * 59.11646 * 5 4 3 16 16 H 1.08996 * 111.67514 * 74.49399 * 15 5 4 17 17 C 1.55646 * 104.95260 * 195.89339 * 15 5 4 18 18 C 1.50853 * 109.64790 * 170.64294 * 17 15 5 19 19 N 1.43257 * 113.33906 * 290.52706 * 18 17 15 20 20 C 1.46904 * 110.99779 * 233.51067 * 19 18 17 21 21 C 1.48654 * 113.48825 * 107.68923 * 19 18 17 22 22 C 1.54899 * 101.50872 * 304.29806 * 21 19 18 23 23 C 1.46665 * 110.99713 * 128.01294 * 2 1 3 24 24 H 1.09001 * 112.55698 * 305.48823 * 23 2 1 25 25 H 1.09002 * 109.47582 * 291.98701 * 1 2 3 26 26 H 1.09001 * 109.47020 * 51.98490 * 1 2 3 27 27 H 1.08999 * 109.47138 * 171.98522 * 1 2 3 28 28 H 1.08999 * 109.82207 * 309.35090 * 3 2 1 29 29 H 1.08998 * 109.82395 * 70.27670 * 3 2 1 30 30 H 1.09006 * 110.03592 * 176.80373 * 4 3 2 31 31 H 1.08994 * 109.03328 * 56.20409 * 4 3 2 32 32 H 0.97008 * 119.99474 * 179.97438 * 10 9 7 33 33 H 1.08996 * 109.44109 * 290.69677 * 17 15 5 34 34 H 1.08996 * 109.44195 * 50.62823 * 17 15 5 35 35 H 1.08999 * 108.71137 * 51.52785 * 18 17 15 36 36 H 1.08998 * 108.70470 * 169.53170 * 18 17 15 37 37 H 1.09003 * 109.47064 * 60.00518 * 20 19 18 38 38 H 1.08996 * 109.47138 * 179.97438 * 20 19 18 39 39 H 1.08995 * 109.47436 * 299.99992 * 20 19 18 40 40 H 1.08996 * 111.02234 * 62.35969 * 21 19 18 41 41 H 1.09004 * 111.02089 * 186.19871 * 21 19 18 42 42 H 1.09008 * 109.43576 * 84.23998 * 22 21 19 43 43 H 1.08993 * 109.44062 * 204.15609 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9926 1.3643 0.0000 4 6 3.4944 1.2873 -0.2404 5 6 4.1243 0.5352 0.9271 6 1 3.9365 1.0879 1.8476 7 6 5.6117 0.4400 0.7055 8 1 6.0784 -0.5260 0.5815 9 6 6.3762 1.5864 0.6556 10 7 5.8368 2.7496 0.9485 11 14 8.1777 1.4874 0.1719 12 1 8.3148 1.7512 -1.2832 13 1 8.9512 2.5007 0.9336 14 1 8.6994 0.1317 0.4804 15 6 3.5486 -0.8752 1.0651 16 1 3.9309 -1.5434 0.2934 17 6 3.9628 -1.3402 2.4916 18 6 3.2566 -2.6296 2.8298 19 7 1.8465 -2.4698 3.0256 20 6 1.4291 -3.0214 4.3216 21 6 1.0274 -3.0311 1.9193 22 6 1.6132 -2.2876 0.6931 23 6 1.9945 -0.8432 1.0788 24 1 1.5988 -0.5668 2.0561 25 1 -0.3634 0.3847 0.9529 26 1 -0.3633 0.6329 -0.8097 27 1 -0.3633 -1.0176 -0.1433 28 1 1.5181 1.9423 -0.7929 29 1 1.8020 1.8334 0.9652 30 1 3.9144 2.2912 -0.3038 31 1 3.6784 0.7488 -1.1700 32 1 6.3748 3.5561 0.9137 33 1 5.0408 -1.4979 2.5230 34 1 3.6868 -0.5749 3.2170 35 1 3.4189 -3.3401 2.0194 36 1 3.6922 -3.0379 3.7418 37 1 1.9542 -2.5023 5.1235 38 1 0.3545 -2.8866 4.4448 39 1 1.6689 -4.0840 4.3585 40 1 1.1747 -4.1074 1.8309 41 1 -0.0277 -2.7930 2.0542 42 1 2.5011 -2.8126 0.3407 43 1 0.8693 -2.2584 -0.1029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260657597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:10 Heat of formation + Delta-G solvation = 21.978239 kcal Electronic energy + Delta-G solvation = -20582.029282 eV Core-core repulsion = 17855.368026 eV Total energy + Delta-G solvation = -2726.661256 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.63046 -36.93877 -34.29269 -32.38881 -31.51105 -30.12897 -27.59153 -26.59555 -24.39359 -23.73263 -23.49537 -21.18316 -20.31096 -19.12664 -18.43309 -16.29080 -15.80826 -15.20332 -14.63432 -14.48186 -14.32423 -13.81100 -13.69247 -13.27694 -12.69434 -12.52310 -12.41070 -12.20756 -11.79628 -11.52096 -11.47404 -11.11329 -10.90649 -10.80910 -10.69621 -10.61617 -10.51437 -10.40006 -10.03483 -9.88762 -9.81366 -9.24412 -8.63091 -8.50102 -8.18062 -7.99252 -7.35547 -5.90746 -3.91804 3.35622 3.42990 3.45539 4.14645 4.51919 4.68799 5.20015 5.26554 5.37450 5.40515 5.51209 5.57048 5.59557 5.71309 5.80422 5.88442 5.92831 5.95150 6.12465 6.14429 6.18578 6.25432 6.29617 6.37566 6.43849 6.52705 6.65511 6.74361 6.89376 6.96719 7.12127 7.21754 7.33405 7.38551 7.53375 7.56303 7.81383 7.94985 8.04207 8.18267 8.21721 8.58101 9.12025 9.70442 11.17364 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.023392 B = 0.007753 C = 0.006337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.727627 B = 3610.443678 C = 4417.767207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.553 5.553 3 C 0.064 3.936 4 C -0.100 4.100 5 C 0.049 3.951 6 H 0.027 0.973 7 C -0.505 4.505 8 H 0.052 0.948 9 C 0.061 3.939 10 N -0.890 5.890 11 Si 0.883 3.117 12 H -0.282 1.282 13 H -0.289 1.289 14 H -0.276 1.276 15 C -0.062 4.062 16 H 0.066 0.934 17 C -0.103 4.103 18 C 0.064 3.936 19 N -0.550 5.550 20 C 0.027 3.973 21 C 0.056 3.944 22 C -0.125 4.125 23 C 0.103 3.897 24 H 0.077 0.923 25 H 0.015 0.985 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.021 0.979 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.257 0.743 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.041 0.959 36 H 0.045 0.955 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.018 0.982 40 H 0.035 0.965 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.897 -9.109 2.420 13.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.278 5.278 3 C -0.063 4.063 4 C -0.139 4.139 5 C 0.031 3.969 6 H 0.045 0.955 7 C -0.543 4.543 8 H 0.070 0.930 9 C -0.139 4.139 10 N -0.530 5.530 11 Si 0.711 3.289 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.201 1.201 15 C -0.080 4.080 16 H 0.085 0.915 17 C -0.141 4.141 18 C -0.064 4.064 19 N -0.275 5.275 20 C -0.122 4.122 21 C -0.071 4.071 22 C -0.163 4.163 23 C -0.004 4.004 24 H 0.095 0.905 25 H 0.033 0.967 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.039 0.961 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.036 0.964 40 H 0.054 0.946 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.743 -8.645 2.037 13.184 hybrid contribution 0.911 -0.463 0.455 1.118 sum -8.832 -9.108 2.492 12.929 Atomic orbital electron populations 1.22283 0.89488 1.00964 0.99216 1.61133 1.05396 1.13778 1.47468 1.21893 0.98676 0.87434 0.98325 1.21368 0.90223 1.02625 0.99643 1.18651 0.94107 0.89608 0.94571 0.95522 1.21231 0.92456 0.92268 1.48383 0.92952 1.24943 0.97790 0.95710 0.95474 1.69953 1.36084 0.98159 1.48771 0.86735 0.85964 0.77632 0.78566 1.20877 1.21517 1.20061 1.22381 0.91078 0.99811 0.94761 0.91547 1.21821 0.99092 0.95422 0.97809 1.21070 0.86734 0.98993 0.99565 1.60829 1.05209 1.59491 1.01923 1.22411 1.00846 0.96763 0.92138 1.23029 0.96992 0.95665 0.91409 1.22857 1.00677 0.96655 0.96087 1.22489 0.96140 0.89933 0.91853 0.90536 0.96689 0.92578 0.92187 0.92955 0.96083 0.90244 0.93920 0.93272 0.91185 0.92096 0.94067 0.93698 0.91767 0.92101 0.96382 0.94650 0.90760 0.91918 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.28 60.06 0.56 0.99 16 2 N -0.55 -10.20 4.26 -233.81 -0.99 -11.19 16 3 C 0.06 1.31 5.52 -4.61 -0.03 1.28 16 4 C -0.10 -2.40 5.14 -27.36 -0.14 -2.54 16 5 C 0.05 1.21 1.34 -92.05 -0.12 1.09 16 6 H 0.03 0.74 7.60 -51.93 -0.39 0.34 16 7 C -0.51 -13.66 7.80 -34.44 -0.27 -13.93 16 8 H 0.05 1.41 7.75 -52.49 -0.41 1.00 16 9 C 0.06 1.70 5.21 -17.82 -0.09 1.61 16 10 N -0.89 -25.61 11.87 55.43 0.66 -24.95 16 11 Si 0.88 21.41 29.54 -169.99 -5.02 16.39 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 C -0.06 -1.27 1.95 -87.93 -0.17 -1.44 16 16 H 0.07 1.43 7.14 -51.93 -0.37 1.06 16 17 C -0.10 -1.95 4.78 -26.40 -0.13 -2.08 16 18 C 0.06 1.00 4.98 -6.83 -0.03 0.97 16 19 N -0.55 -7.94 2.89 -244.53 -0.71 -8.64 16 20 C 0.03 0.32 9.21 60.07 0.55 0.87 16 21 C 0.06 0.74 6.14 -1.85 -0.01 0.73 16 22 C -0.12 -1.91 4.77 -25.06 -0.12 -2.03 16 23 C 0.10 1.88 1.88 -65.87 -0.12 1.76 16 24 H 0.08 1.49 6.51 -51.93 -0.34 1.15 16 25 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.06 0.79 7.98 -51.93 -0.41 0.37 16 27 H 0.06 0.81 6.20 -51.93 -0.32 0.49 16 28 H 0.05 0.98 7.97 -51.93 -0.41 0.57 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 2.10 6.60 -51.93 -0.34 1.76 16 31 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.07 1.40 7.76 -51.93 -0.40 1.00 16 34 H 0.06 1.24 7.72 -51.93 -0.40 0.84 16 35 H 0.04 0.64 6.48 -51.93 -0.34 0.30 16 36 H 0.04 0.64 7.43 -51.93 -0.39 0.26 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.65 8.11 -51.93 -0.42 0.23 16 39 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 40 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 1.01 5.81 -51.92 -0.30 0.71 16 43 H 0.07 0.98 5.84 -51.93 -0.30 0.68 16 LS Contribution 310.09 15.07 4.67 4.67 Total: -1.00 -27.96 310.09 -9.17 -37.13 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -7.65 Total: -0.69 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -0.13 Total: -12.73 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: -1.04 Total: -44.78 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.96 -9.17 -37.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260657597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.109 kcal (2) G-P(sol) polarization free energy of solvation -27.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds