Wall clock time and date at job start Mon Mar 30 2020 04:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46132 * 110.99822 * 2 1 4 4 C 1.52280 * 107.82966 * 189.54577 * 3 2 1 5 5 C 1.52491 * 108.14463 * 296.79202 * 4 3 2 6 6 H 1.09001 * 108.98853 * 298.60412 * 5 4 3 7 7 C 1.50691 * 109.04902 * 179.66578 * 5 4 3 8 8 H 1.07995 * 120.00050 * 243.24714 * 7 5 4 9 9 C 1.37884 * 119.99955 * 62.97130 * 7 5 4 10 10 N 1.31517 * 119.99697 * 7.59615 * 9 7 5 11 11 Si 1.86801 * 119.99989 * 187.59063 * 9 7 5 12 12 H 1.48509 * 109.46833 * 94.75569 * 11 9 7 13 13 H 1.48498 * 109.47345 * 214.75534 * 11 9 7 14 14 H 1.48500 * 109.47301 * 334.76114 * 11 9 7 15 15 C 1.52966 * 111.61805 * 59.11646 * 5 4 3 16 16 H 1.08996 * 111.67514 * 74.49399 * 15 5 4 17 17 C 1.55646 * 104.95260 * 195.89339 * 15 5 4 18 18 C 1.50853 * 109.64790 * 170.64294 * 17 15 5 19 19 N 1.43257 * 113.33906 * 290.52706 * 18 17 15 20 20 C 1.46904 * 110.99779 * 233.51067 * 19 18 17 21 21 C 1.48654 * 113.48825 * 107.68923 * 19 18 17 22 22 C 1.54899 * 101.50872 * 304.29806 * 21 19 18 23 23 C 1.46665 * 110.99713 * 128.01294 * 2 1 3 24 24 H 1.09001 * 112.55698 * 305.48823 * 23 2 1 25 25 H 1.09002 * 109.47582 * 291.98701 * 1 2 3 26 26 H 1.09001 * 109.47020 * 51.98490 * 1 2 3 27 27 H 1.08999 * 109.47138 * 171.98522 * 1 2 3 28 28 H 1.08999 * 109.82207 * 309.35090 * 3 2 1 29 29 H 1.08998 * 109.82395 * 70.27670 * 3 2 1 30 30 H 1.09006 * 110.03592 * 176.80373 * 4 3 2 31 31 H 1.08994 * 109.03328 * 56.20409 * 4 3 2 32 32 H 0.97008 * 119.99474 * 179.97438 * 10 9 7 33 33 H 1.08996 * 109.44109 * 290.69677 * 17 15 5 34 34 H 1.08996 * 109.44195 * 50.62823 * 17 15 5 35 35 H 1.08999 * 108.71137 * 51.52785 * 18 17 15 36 36 H 1.08998 * 108.70470 * 169.53170 * 18 17 15 37 37 H 1.09003 * 109.47064 * 60.00518 * 20 19 18 38 38 H 1.08996 * 109.47138 * 179.97438 * 20 19 18 39 39 H 1.08995 * 109.47436 * 299.99992 * 20 19 18 40 40 H 1.08996 * 111.02234 * 62.35969 * 21 19 18 41 41 H 1.09004 * 111.02089 * 186.19871 * 21 19 18 42 42 H 1.09008 * 109.43576 * 84.23998 * 22 21 19 43 43 H 1.08993 * 109.44062 * 204.15609 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9926 1.3643 0.0000 4 6 3.4944 1.2873 -0.2404 5 6 4.1243 0.5352 0.9271 6 1 3.9365 1.0879 1.8476 7 6 5.6117 0.4400 0.7055 8 1 6.0784 -0.5260 0.5815 9 6 6.3762 1.5864 0.6556 10 7 5.8368 2.7496 0.9485 11 14 8.1777 1.4874 0.1719 12 1 8.3148 1.7512 -1.2832 13 1 8.9512 2.5007 0.9336 14 1 8.6994 0.1317 0.4804 15 6 3.5486 -0.8752 1.0651 16 1 3.9309 -1.5434 0.2934 17 6 3.9628 -1.3402 2.4916 18 6 3.2566 -2.6296 2.8298 19 7 1.8465 -2.4698 3.0256 20 6 1.4291 -3.0214 4.3216 21 6 1.0274 -3.0311 1.9193 22 6 1.6132 -2.2876 0.6931 23 6 1.9945 -0.8432 1.0788 24 1 1.5988 -0.5668 2.0561 25 1 -0.3634 0.3847 0.9529 26 1 -0.3633 0.6329 -0.8097 27 1 -0.3633 -1.0176 -0.1433 28 1 1.5181 1.9423 -0.7929 29 1 1.8020 1.8334 0.9652 30 1 3.9144 2.2912 -0.3038 31 1 3.6784 0.7488 -1.1700 32 1 6.3748 3.5561 0.9137 33 1 5.0408 -1.4979 2.5230 34 1 3.6868 -0.5749 3.2170 35 1 3.4189 -3.3401 2.0194 36 1 3.6922 -3.0379 3.7418 37 1 1.9542 -2.5023 5.1235 38 1 0.3545 -2.8866 4.4448 39 1 1.6689 -4.0840 4.3585 40 1 1.1747 -4.1074 1.8309 41 1 -0.0277 -2.7930 2.0542 42 1 2.5011 -2.8126 0.3407 43 1 0.8693 -2.2584 -0.1029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260657597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:10 Heat of formation + Delta-G solvation = 5.343002 kcal Electronic energy + Delta-G solvation = -20582.750640 eV Core-core repulsion = 17855.368026 eV Total energy + Delta-G solvation = -2727.382614 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.05200 -38.31540 -36.05316 -34.04510 -33.13828 -31.63036 -29.07340 -28.10123 -25.96573 -25.04692 -25.00512 -22.75334 -21.89958 -20.52853 -20.11114 -18.33954 -17.14092 -16.63196 -16.32492 -15.84798 -15.79444 -15.23694 -15.01197 -14.83634 -14.40333 -13.99736 -13.64577 -13.61523 -13.24531 -13.08543 -12.90751 -12.77369 -12.50108 -12.46420 -12.32981 -12.15484 -11.93873 -11.81730 -11.68195 -11.60324 -11.52289 -11.06228 -10.43822 -10.41293 -10.22736 -9.21308 -8.74066 -8.05122 -6.13238 1.40068 1.41834 1.51033 2.46164 3.02302 3.23873 3.28794 3.98116 4.05326 4.17712 4.34727 4.36540 4.39452 4.50581 4.54032 4.64855 4.70385 4.72188 4.76877 4.80869 4.85632 4.89676 4.96965 4.97787 5.05898 5.07959 5.15931 5.19845 5.32006 5.37487 5.40141 5.53190 5.57327 5.67991 5.70945 6.09715 6.11219 6.30715 6.39101 6.44809 6.50527 6.60743 6.99230 7.52153 9.01946 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.023392 B = 0.007753 C = 0.006337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.727627 B = 3610.443678 C = 4417.767207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.560 5.560 3 C 0.075 3.925 4 C -0.094 4.094 5 C 0.053 3.947 6 H -0.015 1.015 7 C -0.519 4.519 8 H 0.048 0.952 9 C 0.012 3.988 10 N -0.920 5.920 11 Si 0.944 3.056 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.268 1.268 15 C -0.059 4.059 16 H 0.057 0.943 17 C -0.095 4.095 18 C 0.076 3.924 19 N -0.570 5.570 20 C 0.029 3.971 21 C 0.066 3.934 22 C -0.117 4.117 23 C 0.110 3.890 24 H 0.067 0.933 25 H 0.016 0.984 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.005 0.995 30 H 0.046 0.954 31 H 0.033 0.967 32 H 0.257 0.743 33 H 0.050 0.950 34 H 0.037 0.963 35 H 0.046 0.954 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.031 0.969 40 H 0.054 0.946 41 H 0.093 0.907 42 H 0.053 0.947 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.396 -11.183 2.229 16.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.286 5.286 3 C -0.053 4.053 4 C -0.132 4.132 5 C 0.034 3.966 6 H 0.004 0.996 7 C -0.557 4.557 8 H 0.067 0.933 9 C -0.186 4.186 10 N -0.560 5.560 11 Si 0.771 3.229 12 H -0.204 1.204 13 H -0.212 1.212 14 H -0.193 1.193 15 C -0.078 4.078 16 H 0.075 0.925 17 C -0.134 4.134 18 C -0.053 4.053 19 N -0.295 5.295 20 C -0.119 4.119 21 C -0.061 4.061 22 C -0.155 4.155 23 C 0.002 3.998 24 H 0.084 0.916 25 H 0.034 0.966 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.089 0.911 29 H 0.023 0.977 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.050 0.950 40 H 0.072 0.928 41 H 0.111 0.889 42 H 0.071 0.929 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.259 -10.740 1.849 15.670 hybrid contribution 1.370 0.220 0.528 1.485 sum -9.889 -10.520 2.377 14.633 Atomic orbital electron populations 1.22366 0.86707 1.02846 0.99821 1.61142 1.07846 1.12101 1.47485 1.21672 0.96321 0.89217 0.98078 1.21169 0.92952 1.00335 0.98784 1.18575 0.93481 0.91757 0.92758 0.99637 1.21568 0.94040 0.92098 1.47994 0.93329 1.25683 1.01915 0.95436 0.95541 1.70087 1.37538 0.98695 1.49711 0.85755 0.81127 0.77828 0.78226 1.20404 1.21249 1.19272 1.22273 0.93331 0.96767 0.95383 0.92454 1.21670 0.98486 0.96934 0.96287 1.20810 0.87692 0.96431 1.00322 1.60692 1.04446 1.60760 1.03589 1.22427 1.01701 0.97321 0.90446 1.23057 0.97448 0.96279 0.89307 1.22717 1.00790 0.94363 0.97663 1.22329 0.93836 0.92120 0.91508 0.91573 0.96559 0.91300 0.89813 0.91055 0.97695 0.93537 0.94810 0.93354 0.93109 0.94371 0.93568 0.92360 0.92273 0.90550 0.95012 0.92783 0.88899 0.92864 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 9.28 127.69 1.18 2.00 16 2 N -0.56 -19.98 4.26 -893.63 -3.80 -23.79 16 3 C 0.08 3.09 5.52 86.21 0.48 3.56 16 4 C -0.09 -4.67 5.14 30.19 0.16 -4.51 16 5 C 0.05 2.73 1.34 -11.72 -0.02 2.71 16 6 H -0.01 -0.86 7.60 -2.39 -0.02 -0.88 16 7 C -0.52 -29.15 7.80 25.60 0.20 -28.95 16 8 H 0.05 2.70 7.75 -2.91 -0.02 2.68 16 9 C 0.01 0.69 5.21 84.66 0.44 1.13 16 10 N -0.92 -55.02 11.87 21.45 0.25 -54.76 16 11 Si 0.94 44.85 29.54 68.60 2.03 46.88 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 14 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 15 C -0.06 -2.48 1.95 -9.05 -0.02 -2.50 16 16 H 0.06 2.51 7.14 -2.39 -0.02 2.49 16 17 C -0.09 -3.70 4.78 30.81 0.15 -3.55 16 18 C 0.08 2.26 4.98 86.28 0.43 2.69 16 19 N -0.57 -15.05 2.89 -927.55 -2.68 -17.72 16 20 C 0.03 0.59 9.21 127.69 1.18 1.77 16 21 C 0.07 1.47 6.14 86.61 0.53 2.00 16 22 C -0.12 -3.28 4.77 31.68 0.15 -3.13 16 23 C 0.11 3.89 1.88 46.24 0.09 3.98 16 24 H 0.07 2.53 6.51 -2.39 -0.02 2.51 16 25 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.07 1.71 7.98 -2.39 -0.02 1.69 16 27 H 0.08 1.90 6.20 -2.39 -0.01 1.89 16 28 H 0.07 2.64 7.97 -2.39 -0.02 2.62 16 29 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.05 2.58 6.60 -2.38 -0.02 2.57 16 31 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 33 H 0.05 2.11 7.76 -2.39 -0.02 2.10 16 34 H 0.04 1.62 7.72 -2.39 -0.02 1.61 16 35 H 0.05 1.33 6.48 -2.39 -0.02 1.32 16 36 H 0.06 1.57 7.43 -2.39 -0.02 1.56 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.08 1.35 8.11 -2.39 -0.02 1.33 16 39 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 42 H 0.05 1.60 5.81 -2.38 -0.01 1.59 16 43 H 0.08 2.02 5.84 -2.39 -0.01 2.01 16 Total: -1.00 -62.57 310.09 1.70 -60.86 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.95 Total: 11.31 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: 4.95 Total: -22.78 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -6.22 Total: -96.27 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -62.57 1.70 -60.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260657597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.206 kcal (2) G-P(sol) polarization free energy of solvation -62.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds