Wall clock time and date at job start Mon Mar 30 2020 04:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.45118 * 110.99841 * 2 1 4 4 C 1.50458 * 111.83946 * 174.44515 * 3 2 1 5 5 C 1.50332 * 114.19268 * 48.65496 * 4 3 2 6 6 H 1.08999 * 107.70459 * 208.73835 * 5 4 3 7 7 C 1.50694 * 107.73841 * 93.02634 * 5 4 3 8 8 H 1.08000 * 120.00563 * 231.70594 * 7 5 4 9 9 C 1.37885 * 119.99902 * 51.70430 * 7 5 4 10 10 N 1.31516 * 119.99913 * 0.02562 * 9 7 5 11 11 Si 1.86805 * 119.99854 * 179.72538 * 9 7 5 12 12 H 1.48498 * 109.47200 * 59.99994 * 11 9 7 13 13 H 1.48498 * 109.46671 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47156 * 300.00008 * 11 9 7 15 15 C 1.49158 * 117.99351 * 330.86857 * 5 4 3 16 16 H 1.08997 * 106.05988 * 135.49077 * 15 5 4 17 17 C 1.52201 * 112.43127 * 250.46131 * 15 5 4 18 18 C 1.52585 * 110.10086 * 219.95159 * 17 15 5 19 19 N 1.43240 * 115.44838 * 269.56731 * 18 17 15 20 20 C 1.46904 * 110.99336 * 184.10197 * 19 18 17 21 21 C 1.50044 * 107.20387 * 62.72991 * 19 18 17 22 22 C 1.53558 * 105.67519 * 286.81231 * 21 19 18 23 23 C 1.44445 * 111.00280 * 230.51534 * 2 1 3 24 24 H 1.08999 * 106.12988 * 55.14963 * 23 2 1 25 25 H 1.09005 * 109.46536 * 189.48838 * 1 2 3 26 26 H 1.08998 * 109.47569 * 309.48558 * 1 2 3 27 27 H 1.08998 * 109.47360 * 69.49335 * 1 2 3 28 28 H 1.09004 * 109.08937 * 294.35774 * 3 2 1 29 29 H 1.08999 * 109.08825 * 53.41541 * 3 2 1 30 30 H 1.09000 * 107.23772 * 288.23201 * 4 3 2 31 31 H 1.08993 * 109.48589 * 170.70997 * 4 3 2 32 32 H 0.97001 * 119.99646 * 180.02562 * 10 9 7 33 33 H 1.08998 * 109.21537 * 339.72686 * 17 15 5 34 34 H 1.08995 * 109.21451 * 99.04316 * 17 15 5 35 35 H 1.09004 * 108.32898 * 148.14892 * 18 17 15 36 36 H 1.08996 * 108.48324 * 31.10357 * 18 17 15 37 37 H 1.08995 * 109.47694 * 296.92472 * 20 19 18 38 38 H 1.08998 * 109.47142 * 56.92770 * 20 19 18 39 39 H 1.09006 * 109.46824 * 176.92503 * 20 19 18 40 40 H 1.08998 * 110.19717 * 167.76952 * 21 19 18 41 41 H 1.08996 * 110.19937 * 45.84825 * 21 19 18 42 42 H 1.08994 * 109.22806 * 344.94801 * 22 21 19 43 43 H 1.09006 * 109.21964 * 225.60272 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9890 1.3548 0.0000 4 6 3.4873 1.3792 0.1352 5 6 4.2056 0.4483 -0.8015 6 1 5.1376 0.1495 -0.3217 7 6 4.5630 1.2289 -2.0400 8 1 4.2970 0.8470 -3.0146 9 6 5.2297 2.4307 -1.9290 10 7 5.5541 2.8956 -0.7423 11 14 5.6795 3.3946 -3.4647 12 1 4.4438 3.7375 -4.2135 13 1 6.3851 4.6423 -3.0769 14 1 6.5665 2.5703 -4.3244 15 6 3.4992 -0.7920 -1.2342 16 1 3.6672 -0.8758 -2.3079 17 6 4.1055 -2.0482 -0.6251 18 6 4.1405 -3.1686 -1.6603 19 7 2.9828 -4.0114 -1.6945 20 6 3.1598 -5.1101 -2.6534 21 6 1.8164 -3.1479 -2.0756 22 6 1.5110 -2.2930 -0.8371 23 6 1.9867 -0.8575 -1.0408 24 1 1.5366 -0.5104 -1.9708 25 1 -0.3632 -1.0137 0.1694 26 1 -0.3634 0.6534 0.7931 27 1 -0.3634 0.3600 -0.9625 28 1 1.7201 1.8399 -0.9384 29 1 1.5436 1.9076 0.8271 30 1 3.7238 1.0933 1.1601 31 1 3.8511 2.3927 -0.0338 32 1 6.0228 3.7413 -0.6643 33 1 5.1226 -1.8331 -0.2976 34 1 3.5096 -2.3533 0.2351 35 1 5.0103 -3.7941 -1.4591 36 1 4.2659 -2.7234 -2.6472 37 1 3.2686 -4.7017 -3.6581 38 1 4.0528 -5.6787 -2.3937 39 1 2.2893 -5.7654 -2.6199 40 1 0.9556 -3.7676 -2.3268 41 1 2.0805 -2.5089 -2.9181 42 1 2.0185 -2.7200 0.0278 43 1 0.4358 -2.2928 -0.6574 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260657599.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:13 Heat of formation + Delta-G solvation = 27.055366 kcal Electronic energy + Delta-G solvation = -20547.341495 eV Core-core repulsion = 17820.900400 eV Total energy + Delta-G solvation = -2726.441095 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.90324 -37.24043 -34.62160 -33.02783 -31.54318 -29.92050 -27.95918 -26.64627 -24.79705 -23.99525 -23.49167 -21.56399 -20.74081 -19.95156 -17.17582 -16.19970 -15.76962 -15.31448 -14.97296 -14.69483 -14.43976 -14.11623 -13.64086 -13.34278 -12.84500 -12.75165 -12.34753 -12.25781 -12.08238 -11.63989 -11.48183 -11.37042 -11.11043 -11.01258 -10.78678 -10.59649 -10.46385 -10.21161 -10.03002 -9.84189 -9.46053 -9.16994 -9.09037 -8.62290 -8.23827 -8.14421 -7.35085 -5.92619 -4.05399 3.29633 3.34870 3.37244 4.17147 4.42175 4.55188 5.13629 5.23151 5.27866 5.38478 5.46739 5.54976 5.62598 5.70178 5.80094 5.83582 5.88196 5.92350 5.96502 6.02453 6.11443 6.17420 6.27043 6.35111 6.44116 6.50270 6.63138 6.70499 6.85383 6.85745 7.09155 7.16541 7.23260 7.28931 7.40339 7.63744 7.77917 7.94503 8.05776 8.09419 8.37243 8.61721 8.99678 9.58546 11.04624 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020609 B = 0.008034 C = 0.006516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.318712 B = 3484.360909 C = 4295.946606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.558 5.558 3 C 0.085 3.915 4 C -0.112 4.112 5 C 0.052 3.948 6 H 0.024 0.976 7 C -0.506 4.506 8 H 0.049 0.951 9 C 0.055 3.945 10 N -0.887 5.887 11 Si 0.887 3.113 12 H -0.279 1.279 13 H -0.287 1.287 14 H -0.278 1.278 15 C -0.060 4.060 16 H 0.053 0.947 17 C -0.115 4.115 18 C 0.050 3.950 19 N -0.524 5.524 20 C 0.020 3.980 21 C 0.045 3.955 22 C -0.119 4.119 23 C 0.120 3.880 24 H 0.006 0.994 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.015 0.985 28 H 0.016 0.984 29 H 0.052 0.948 30 H 0.018 0.982 31 H 0.122 0.878 32 H 0.260 0.740 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.026 0.974 37 H 0.023 0.977 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.046 0.954 42 H 0.091 0.909 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.225 -9.883 -0.706 12.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.283 5.283 3 C -0.042 4.042 4 C -0.150 4.150 5 C 0.034 3.966 6 H 0.042 0.958 7 C -0.544 4.544 8 H 0.067 0.933 9 C -0.144 4.144 10 N -0.528 5.528 11 Si 0.715 3.285 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.204 1.204 15 C -0.078 4.078 16 H 0.071 0.929 17 C -0.153 4.153 18 C -0.079 4.079 19 N -0.248 5.248 20 C -0.129 4.129 21 C -0.083 4.083 22 C -0.156 4.156 23 C 0.011 3.989 24 H 0.024 0.976 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.033 0.967 28 H 0.034 0.966 29 H 0.071 0.929 30 H 0.037 0.963 31 H 0.139 0.861 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.042 0.958 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.109 0.891 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.010 -10.130 0.232 12.321 hybrid contribution 0.161 1.280 -2.553 2.861 sum -6.849 -8.850 -2.321 11.429 Atomic orbital electron populations 1.22305 0.88535 1.01260 0.99392 1.58777 1.05484 1.13766 1.50282 1.21078 0.98501 0.86256 0.98358 1.20809 0.90519 1.06776 0.96892 1.17335 0.94127 0.89990 0.95177 0.95777 1.21646 1.35456 1.04923 0.92373 0.93250 1.24957 0.96165 0.97575 0.95734 1.69758 1.40416 1.20890 1.21708 0.86732 0.78591 0.79452 0.83700 1.20507 1.21208 1.20390 1.20428 0.91522 0.95841 1.00050 0.92898 1.21765 1.01559 0.93820 0.98123 1.21575 0.92367 0.95053 0.98864 1.63270 1.04929 1.10038 1.46574 1.22408 1.02069 0.94630 0.93773 1.23028 0.93350 0.94761 0.97177 1.21962 1.00438 0.94429 0.98812 1.20726 0.95968 0.91430 0.90786 0.97644 0.91920 0.92225 0.96684 0.96586 0.92923 0.96289 0.86098 0.92931 0.91608 0.90580 0.92353 0.95567 0.95797 0.91631 0.91570 0.91324 0.93593 0.89117 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.21 60.06 0.55 1.07 16 2 N -0.56 -10.65 4.54 -240.40 -1.09 -11.74 16 3 C 0.08 1.80 5.44 -6.05 -0.03 1.77 16 4 C -0.11 -2.73 5.08 -29.33 -0.15 -2.88 16 5 C 0.05 1.30 2.23 -94.99 -0.21 1.08 16 6 H 0.02 0.66 7.06 -51.93 -0.37 0.29 16 7 C -0.51 -13.72 8.39 -34.44 -0.29 -14.00 16 8 H 0.05 1.34 7.08 -52.49 -0.37 0.97 16 9 C 0.06 1.51 5.05 -17.82 -0.09 1.42 16 10 N -0.89 -24.90 10.80 55.43 0.60 -24.30 16 11 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 C -0.06 -1.25 1.92 -93.11 -0.18 -1.43 16 16 H 0.05 1.18 5.56 -51.93 -0.29 0.89 16 17 C -0.12 -2.12 5.11 -27.35 -0.14 -2.26 16 18 C 0.05 0.81 4.66 -5.98 -0.03 0.78 16 19 N -0.52 -7.61 4.89 -243.05 -1.19 -8.80 16 20 C 0.02 0.23 9.55 60.07 0.57 0.81 16 21 C 0.04 0.64 5.49 -1.77 -0.01 0.63 16 22 C -0.12 -1.86 4.81 -26.65 -0.13 -1.99 16 23 C 0.12 2.26 1.64 -69.43 -0.11 2.15 16 24 H 0.01 0.11 7.82 -51.93 -0.41 -0.29 16 25 H 0.06 0.86 6.09 -51.93 -0.32 0.54 16 26 H 0.06 0.85 7.96 -51.93 -0.41 0.43 16 27 H 0.01 0.23 8.07 -51.93 -0.42 -0.19 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 1.03 7.97 -51.93 -0.41 0.61 16 30 H 0.02 0.45 8.13 -51.93 -0.42 0.03 16 31 H 0.12 3.29 4.79 -51.93 -0.25 3.04 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.07 1.26 7.20 -51.93 -0.37 0.89 16 34 H 0.08 1.39 5.58 -51.93 -0.29 1.10 16 35 H 0.06 0.88 8.00 -51.93 -0.42 0.46 16 36 H 0.03 0.45 6.91 -51.93 -0.36 0.09 16 37 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.06 0.71 8.04 -51.93 -0.42 0.29 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 41 H 0.05 0.72 7.11 -51.93 -0.37 0.35 16 42 H 0.09 1.52 5.38 -51.93 -0.28 1.24 16 43 H 0.06 0.84 5.88 -51.93 -0.31 0.53 16 LS Contribution 305.12 15.07 4.60 4.60 Total: -1.00 -27.66 305.12 -9.65 -37.31 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -7.30 Total: -0.40 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -0.24 Total: -12.85 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -1.68 Total: -44.84 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.66 -9.65 -37.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260657599.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.363 kcal (2) G-P(sol) polarization free energy of solvation -27.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds