Wall clock time and date at job start Mon Mar 30 2020 04:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.45118 * 110.99841 * 2 1 4 4 C 1.50458 * 111.83946 * 174.44515 * 3 2 1 5 5 C 1.50332 * 114.19268 * 48.65496 * 4 3 2 6 6 H 1.08999 * 107.70459 * 208.73835 * 5 4 3 7 7 C 1.50694 * 107.73841 * 93.02634 * 5 4 3 8 8 H 1.08000 * 120.00563 * 231.70594 * 7 5 4 9 9 C 1.37885 * 119.99902 * 51.70430 * 7 5 4 10 10 N 1.31516 * 119.99913 * 0.02562 * 9 7 5 11 11 Si 1.86805 * 119.99854 * 179.72538 * 9 7 5 12 12 H 1.48498 * 109.47200 * 59.99994 * 11 9 7 13 13 H 1.48498 * 109.46671 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47156 * 300.00008 * 11 9 7 15 15 C 1.49158 * 117.99351 * 330.86857 * 5 4 3 16 16 H 1.08997 * 106.05988 * 135.49077 * 15 5 4 17 17 C 1.52201 * 112.43127 * 250.46131 * 15 5 4 18 18 C 1.52585 * 110.10086 * 219.95159 * 17 15 5 19 19 N 1.43240 * 115.44838 * 269.56731 * 18 17 15 20 20 C 1.46904 * 110.99336 * 184.10197 * 19 18 17 21 21 C 1.50044 * 107.20387 * 62.72991 * 19 18 17 22 22 C 1.53558 * 105.67519 * 286.81231 * 21 19 18 23 23 C 1.44445 * 111.00280 * 230.51534 * 2 1 3 24 24 H 1.08999 * 106.12988 * 55.14963 * 23 2 1 25 25 H 1.09005 * 109.46536 * 189.48838 * 1 2 3 26 26 H 1.08998 * 109.47569 * 309.48558 * 1 2 3 27 27 H 1.08998 * 109.47360 * 69.49335 * 1 2 3 28 28 H 1.09004 * 109.08937 * 294.35774 * 3 2 1 29 29 H 1.08999 * 109.08825 * 53.41541 * 3 2 1 30 30 H 1.09000 * 107.23772 * 288.23201 * 4 3 2 31 31 H 1.08993 * 109.48589 * 170.70997 * 4 3 2 32 32 H 0.97001 * 119.99646 * 180.02562 * 10 9 7 33 33 H 1.08998 * 109.21537 * 339.72686 * 17 15 5 34 34 H 1.08995 * 109.21451 * 99.04316 * 17 15 5 35 35 H 1.09004 * 108.32898 * 148.14892 * 18 17 15 36 36 H 1.08996 * 108.48324 * 31.10357 * 18 17 15 37 37 H 1.08995 * 109.47694 * 296.92472 * 20 19 18 38 38 H 1.08998 * 109.47142 * 56.92770 * 20 19 18 39 39 H 1.09006 * 109.46824 * 176.92503 * 20 19 18 40 40 H 1.08998 * 110.19717 * 167.76952 * 21 19 18 41 41 H 1.08996 * 110.19937 * 45.84825 * 21 19 18 42 42 H 1.08994 * 109.22806 * 344.94801 * 22 21 19 43 43 H 1.09006 * 109.21964 * 225.60272 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9890 1.3548 0.0000 4 6 3.4873 1.3792 0.1352 5 6 4.2056 0.4483 -0.8015 6 1 5.1376 0.1495 -0.3217 7 6 4.5630 1.2289 -2.0400 8 1 4.2970 0.8470 -3.0146 9 6 5.2297 2.4307 -1.9290 10 7 5.5541 2.8956 -0.7423 11 14 5.6795 3.3946 -3.4647 12 1 4.4438 3.7375 -4.2135 13 1 6.3851 4.6423 -3.0769 14 1 6.5665 2.5703 -4.3244 15 6 3.4992 -0.7920 -1.2342 16 1 3.6672 -0.8758 -2.3079 17 6 4.1055 -2.0482 -0.6251 18 6 4.1405 -3.1686 -1.6603 19 7 2.9828 -4.0114 -1.6945 20 6 3.1598 -5.1101 -2.6534 21 6 1.8164 -3.1479 -2.0756 22 6 1.5110 -2.2930 -0.8371 23 6 1.9867 -0.8575 -1.0408 24 1 1.5366 -0.5104 -1.9708 25 1 -0.3632 -1.0137 0.1694 26 1 -0.3634 0.6534 0.7931 27 1 -0.3634 0.3600 -0.9625 28 1 1.7201 1.8399 -0.9384 29 1 1.5436 1.9076 0.8271 30 1 3.7238 1.0933 1.1601 31 1 3.8511 2.3927 -0.0338 32 1 6.0228 3.7413 -0.6643 33 1 5.1226 -1.8331 -0.2976 34 1 3.5096 -2.3533 0.2351 35 1 5.0103 -3.7941 -1.4591 36 1 4.2659 -2.7234 -2.6472 37 1 3.2686 -4.7017 -3.6581 38 1 4.0528 -5.6787 -2.3937 39 1 2.2893 -5.7654 -2.6199 40 1 0.9556 -3.7676 -2.3268 41 1 2.0805 -2.5089 -2.9181 42 1 2.0185 -2.7200 0.0278 43 1 0.4358 -2.2928 -0.6574 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260657599.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:13 Heat of formation + Delta-G solvation = 8.988400 kcal Electronic energy + Delta-G solvation = -20548.124937 eV Core-core repulsion = 17820.900400 eV Total energy + Delta-G solvation = -2727.224538 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.40306 -38.62934 -36.42145 -34.56664 -33.31196 -31.44707 -29.47254 -28.17551 -26.33814 -25.42642 -25.09810 -23.17917 -22.05389 -21.57583 -18.91897 -18.16201 -17.18941 -16.91472 -16.44999 -16.27277 -15.95890 -15.51158 -15.10043 -14.93747 -14.45122 -14.17645 -13.99577 -13.63675 -13.47460 -12.95470 -12.89334 -12.79052 -12.69628 -12.66868 -12.42395 -12.31801 -12.06658 -11.91421 -11.77778 -11.39892 -11.07518 -10.95607 -10.82765 -10.61560 -10.21267 -9.40728 -8.91778 -8.03943 -6.24765 1.36940 1.37040 1.45154 2.39217 2.96115 3.12945 3.14473 3.85935 3.93078 4.00909 4.18308 4.25893 4.37936 4.42809 4.47718 4.54102 4.59190 4.63739 4.69954 4.72155 4.79073 4.84419 4.94225 4.94736 5.02976 5.06543 5.08336 5.15788 5.24982 5.30712 5.31614 5.44277 5.57574 5.61767 5.72676 5.94778 6.04545 6.20856 6.35105 6.39540 6.48817 6.60959 6.88978 7.42447 8.91576 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020609 B = 0.008034 C = 0.006516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.318712 B = 3484.360909 C = 4295.946606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.565 5.565 3 C 0.094 3.906 4 C -0.108 4.108 5 C 0.055 3.945 6 H -0.012 1.012 7 C -0.526 4.526 8 H 0.041 0.959 9 C 0.011 3.989 10 N -0.909 5.909 11 Si 0.947 3.053 12 H -0.275 1.275 13 H -0.280 1.280 14 H -0.274 1.274 15 C -0.058 4.058 16 H 0.031 0.969 17 C -0.106 4.106 18 C 0.061 3.939 19 N -0.527 5.527 20 C 0.018 3.982 21 C 0.047 3.953 22 C -0.108 4.108 23 C 0.123 3.877 24 H -0.011 1.011 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.015 0.985 28 H -0.004 1.004 29 H 0.073 0.927 30 H 0.010 0.990 31 H 0.093 0.907 32 H 0.261 0.739 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.009 0.991 37 H 0.022 0.978 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.028 0.972 42 H 0.085 0.915 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.942 -11.437 -1.072 14.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.290 5.290 3 C -0.033 4.033 4 C -0.146 4.146 5 C 0.037 3.963 6 H 0.006 0.994 7 C -0.564 4.564 8 H 0.059 0.941 9 C -0.186 4.186 10 N -0.550 5.550 11 Si 0.773 3.227 12 H -0.201 1.201 13 H -0.205 1.205 14 H -0.200 1.200 15 C -0.077 4.077 16 H 0.050 0.950 17 C -0.144 4.144 18 C -0.069 4.069 19 N -0.251 5.251 20 C -0.129 4.129 21 C -0.081 4.081 22 C -0.145 4.145 23 C 0.014 3.986 24 H 0.006 0.994 25 H 0.106 0.894 26 H 0.093 0.907 27 H 0.034 0.966 28 H 0.015 0.985 29 H 0.091 0.909 30 H 0.028 0.972 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.027 0.973 37 H 0.041 0.959 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.047 0.953 42 H 0.103 0.897 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.739 -11.701 -0.136 14.605 hybrid contribution 0.717 1.772 -2.417 3.081 sum -8.022 -9.929 -2.553 13.018 Atomic orbital electron populations 1.22425 0.85679 1.03305 1.00028 1.58813 1.07940 1.12125 1.50080 1.20889 0.96307 0.88019 0.98127 1.20631 0.93010 1.04877 0.96055 1.17305 0.93285 0.91534 0.94204 0.99398 1.21902 1.36022 1.05677 0.92778 0.94096 1.25662 0.96029 0.98436 0.98504 1.69911 1.40572 1.21110 1.23384 0.85784 0.78392 0.78225 0.80323 1.20052 1.20467 1.19960 1.20265 0.93578 0.95220 0.98651 0.95012 1.21630 1.00286 0.93579 0.98915 1.21374 0.93965 0.94609 0.96915 1.63275 1.03992 1.10031 1.47776 1.22510 1.03668 0.93820 0.92951 1.23046 0.94377 0.94853 0.95828 1.21884 1.01615 0.91857 0.99180 1.20737 0.93990 0.93708 0.90161 0.99355 0.89416 0.90708 0.96634 0.98550 0.90911 0.97157 0.88898 0.92880 0.93382 0.89994 0.91096 0.97253 0.95897 0.90679 0.89365 0.88273 0.95330 0.89683 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 9.21 127.69 1.18 2.10 16 2 N -0.56 -20.91 4.54 -914.48 -4.15 -25.06 16 3 C 0.09 4.02 5.44 85.82 0.47 4.49 16 4 C -0.11 -5.44 5.08 28.91 0.15 -5.29 16 5 C 0.06 2.88 2.23 -13.63 -0.03 2.85 16 6 H -0.01 -0.70 7.06 -2.39 -0.02 -0.71 16 7 C -0.53 -29.71 8.39 25.60 0.21 -29.49 16 8 H 0.04 2.32 7.08 -2.91 -0.02 2.30 16 9 C 0.01 0.64 5.05 84.66 0.43 1.06 16 10 N -0.91 -52.69 10.80 21.45 0.23 -52.45 16 11 Si 0.95 44.27 29.54 68.60 2.03 46.30 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 14 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 15 C -0.06 -2.52 1.92 -12.41 -0.02 -2.55 16 16 H 0.03 1.48 5.56 -2.39 -0.01 1.47 16 17 C -0.11 -3.98 5.11 30.19 0.15 -3.83 16 18 C 0.06 1.92 4.66 86.84 0.41 2.33 16 19 N -0.53 -14.05 4.89 -922.87 -4.51 -18.56 16 20 C 0.02 0.38 9.55 127.69 1.22 1.60 16 21 C 0.05 1.23 5.49 85.87 0.47 1.70 16 22 C -0.11 -3.12 4.81 30.65 0.15 -2.97 16 23 C 0.12 4.58 1.64 45.11 0.07 4.66 16 24 H -0.01 -0.47 7.82 -2.39 -0.02 -0.48 16 25 H 0.09 2.05 6.09 -2.38 -0.01 2.03 16 26 H 0.07 1.89 7.96 -2.39 -0.02 1.87 16 27 H 0.02 0.44 8.07 -2.39 -0.02 0.42 16 28 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 29 H 0.07 2.78 7.97 -2.39 -0.02 2.76 16 30 H 0.01 0.49 8.13 -2.39 -0.02 0.47 16 31 H 0.09 5.28 4.79 -2.39 -0.01 5.27 16 32 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 33 H 0.05 1.93 7.20 -2.39 -0.02 1.91 16 34 H 0.08 2.96 5.58 -2.39 -0.01 2.94 16 35 H 0.07 2.05 8.00 -2.38 -0.02 2.03 16 36 H 0.01 0.33 6.91 -2.39 -0.02 0.31 16 37 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.07 1.41 8.04 -2.39 -0.02 1.39 16 39 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.10 2.05 8.08 -2.39 -0.02 2.03 16 41 H 0.03 0.86 7.11 -2.39 -0.02 0.85 16 42 H 0.08 2.62 5.38 -2.39 -0.01 2.61 16 43 H 0.08 2.02 5.88 -2.38 -0.01 2.00 16 Total: -1.00 -61.51 305.12 -0.58 -62.09 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.97 Total: 11.06 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: 4.85 Total: -23.36 kcal Atomic # 7 Polarization: -87.65 SS G_CDS: -8.43 Total: -96.08 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -61.51 -0.58 -62.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260657599.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.074 kcal (2) G-P(sol) polarization free energy of solvation -61.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds