Wall clock time and date at job start Mon Mar 30 2020 05:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46901 * 110.99867 * 2 1 4 4 C 1.50699 * 109.47217 * 287.92720 * 3 2 1 5 5 H 1.08004 * 119.99993 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00187 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00026 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 119.99957 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.46855 * 90.00569 * 8 6 4 10 10 H 1.48506 * 109.47301 * 210.00164 * 8 6 4 11 11 H 1.48498 * 109.47366 * 330.00375 * 8 6 4 12 12 C 1.46904 * 110.99750 * 123.95115 * 2 1 3 13 13 H 1.08996 * 109.79238 * 189.57670 * 12 2 1 14 14 C 1.54312 * 109.63179 * 69.07534 * 12 2 1 15 15 C 1.45882 * 112.11051 * 161.71633 * 14 12 2 16 16 C 1.54311 * 112.18551 * 61.16696 * 15 14 12 17 17 C 1.50439 * 108.49833 * 281.45902 * 16 15 14 18 18 N 1.48004 * 112.82476 * 93.72841 * 17 16 15 19 19 C 1.46907 * 110.99684 * 84.83688 * 18 17 16 20 20 C 1.52998 * 117.49805 * 124.66793 * 19 18 17 21 21 C 1.53001 * 60.00080 * 252.51143 * 20 19 18 22 22 C 1.47996 * 114.63117 * 318.09292 * 18 17 16 23 23 H 1.08998 * 109.47011 * 302.41956 * 1 2 3 24 24 H 1.09000 * 109.46375 * 62.41865 * 1 2 3 25 25 H 1.08993 * 109.46847 * 182.41315 * 1 2 3 26 26 H 1.08993 * 109.47469 * 47.93239 * 3 2 1 27 27 H 1.09005 * 109.47092 * 167.93251 * 3 2 1 28 28 H 0.96997 * 119.99962 * 180.02562 * 7 6 4 29 29 H 1.08995 * 108.93874 * 41.06786 * 14 12 2 30 30 H 1.08997 * 108.94007 * 282.36996 * 14 12 2 31 31 H 1.08998 * 108.93504 * 181.86323 * 15 14 12 32 32 H 1.08996 * 108.93855 * 300.55686 * 15 14 12 33 33 H 1.09003 * 109.63330 * 41.16746 * 16 15 14 34 34 H 1.09002 * 109.62697 * 161.55230 * 16 15 14 35 35 H 1.08999 * 108.80856 * 214.59353 * 17 16 15 36 36 H 1.08995 * 108.81215 * 332.86567 * 17 16 15 37 37 H 1.08999 * 115.54786 * 270.37384 * 19 18 17 38 38 H 1.09002 * 117.49872 * 0.02562 * 20 19 18 39 39 H 1.09000 * 117.50162 * 145.01905 * 20 19 18 40 40 H 1.09003 * 117.49607 * 252.50956 * 21 20 19 41 41 H 1.08996 * 117.50123 * 107.49167 * 21 20 19 42 42 H 1.09000 * 108.80968 * 78.95324 * 22 18 17 43 43 H 1.08998 * 108.81168 * 197.33556 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7672 1.9972 -1.3518 5 1 1.2794 1.4326 -2.1328 6 6 2.1810 3.2903 -1.5917 7 7 1.9813 3.8365 -2.7713 8 14 3.0240 4.2669 -0.2408 9 1 4.4910 4.0480 -0.3136 10 1 2.7299 5.7118 -0.4174 11 1 2.5214 3.8175 1.0823 12 6 1.9954 -0.7660 1.1377 13 1 3.0718 -0.6145 1.2182 14 6 1.6966 -2.2663 0.9353 15 6 2.5369 -3.1118 1.7762 16 6 2.3179 -2.8399 3.2793 17 6 3.0634 -1.5873 3.6513 18 7 2.2182 -0.3743 3.5821 19 6 1.4635 -0.1867 4.8285 20 6 1.6192 1.1513 5.5540 21 6 2.2605 -0.1117 6.1324 22 6 1.3226 -0.3128 2.4055 23 1 -0.3633 0.5509 0.8675 24 1 -0.3632 0.4758 -0.9109 25 1 -0.3633 -1.0267 0.0433 26 1 1.4829 1.9574 0.7628 27 1 3.0639 1.3505 0.2149 28 1 2.2728 4.7461 -2.9402 29 1 1.8693 -2.5236 -0.1097 30 1 0.6507 -2.4545 1.1774 31 1 2.3071 -4.1569 1.5685 32 1 3.5828 -2.9248 1.5328 33 1 1.2543 -2.7053 3.4760 34 1 2.6944 -3.6806 3.8621 35 1 3.4437 -1.6933 4.6673 36 1 3.9080 -1.4664 2.9731 37 1 0.4860 -0.6677 4.8630 38 1 2.2812 1.8925 5.1064 39 1 0.7439 1.5510 6.0660 40 1 1.8071 -0.5429 7.0249 41 1 3.3447 -0.2015 6.0655 42 1 0.4556 -0.9469 2.5903 43 1 0.9842 0.7150 2.2747 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260684674.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:59 Heat of formation + Delta-G solvation = 40.690115 kcal Electronic energy + Delta-G solvation = -19941.753114 eV Core-core repulsion = 17215.903266 eV Total energy + Delta-G solvation = -2725.849848 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.82983 -37.31916 -35.55176 -32.68115 -32.50817 -30.47029 -27.72194 -26.25962 -25.18830 -24.08083 -22.26463 -21.83740 -20.63951 -19.62550 -18.74093 -17.08238 -16.46995 -15.69526 -15.13279 -14.87563 -14.63305 -13.99412 -13.77793 -13.63743 -13.33650 -12.95346 -12.60743 -12.31425 -12.21619 -11.84938 -11.64553 -11.53221 -11.13340 -11.12952 -10.94619 -10.88426 -10.56018 -10.50197 -10.34794 -10.20793 -10.08094 -9.97612 -9.66811 -9.25760 -8.51052 -8.08321 -7.32095 -5.99991 -3.96609 3.33722 3.40694 3.45534 3.71098 3.79179 4.47777 4.73349 4.74819 4.88750 4.92642 4.99213 5.09094 5.21132 5.23497 5.32416 5.42305 5.47290 5.56685 5.66621 5.74200 5.79162 5.82818 5.90608 5.96922 5.99938 6.08391 6.16628 6.18134 6.21823 6.28179 6.34469 6.52942 6.58409 6.70705 6.94114 7.05342 7.23231 7.23708 7.67924 7.96685 8.10123 8.71925 9.09500 9.62458 11.13240 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020145 B = 0.007039 C = 0.005749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.567694 B = 3977.019029 C = 4869.012053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.519 5.519 3 C 0.163 3.837 4 C -0.506 4.506 5 H 0.080 0.920 6 C 0.068 3.932 7 N -0.902 5.902 8 Si 0.872 3.128 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.266 1.266 12 C 0.083 3.917 13 H 0.085 0.915 14 C -0.113 4.113 15 C -0.113 4.113 16 C -0.146 4.146 17 C 0.059 3.941 18 N -0.520 5.520 19 C 0.012 3.988 20 C -0.166 4.166 21 C -0.176 4.176 22 C 0.043 3.957 23 H 0.014 0.986 24 H 0.075 0.925 25 H 0.048 0.952 26 H -0.008 1.008 27 H 0.023 0.977 28 H 0.263 0.737 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.030 0.970 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.312 -11.951 16.227 20.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.242 5.242 3 C 0.037 3.963 4 C -0.544 4.544 5 H 0.098 0.902 6 C -0.133 4.133 7 N -0.542 5.542 8 Si 0.700 3.300 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.190 1.190 12 C -0.027 4.027 13 H 0.103 0.897 14 C -0.151 4.151 15 C -0.151 4.151 16 C -0.185 4.185 17 C -0.068 4.068 18 N -0.245 5.245 19 C -0.097 4.097 20 C -0.204 4.204 21 C -0.213 4.213 22 C -0.086 4.086 23 H 0.033 0.967 24 H 0.094 0.906 25 H 0.067 0.933 26 H 0.009 0.991 27 H 0.041 0.959 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.116 0.884 42 H 0.048 0.952 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.180 -11.633 15.601 19.462 hybrid contribution -0.431 0.427 1.466 1.586 sum -0.251 -11.206 17.067 20.418 Atomic orbital electron populations 1.22276 0.88713 0.99421 1.01155 1.62242 1.07110 1.16702 1.38103 1.20196 0.94637 0.84026 0.97434 1.21046 1.38689 0.97908 0.96763 0.90225 1.24887 0.95726 0.97453 0.95282 1.69898 1.47845 1.14807 1.21623 0.86894 0.80440 0.79421 0.83265 1.20196 1.21333 1.19039 1.21556 1.00084 0.93169 0.87870 0.89707 1.20597 0.99213 0.94407 1.00834 1.20539 1.00862 0.99424 0.94310 1.21922 1.01069 0.98663 0.96895 1.21934 0.96114 0.87062 1.01680 1.61602 1.25117 1.37130 1.00608 1.22355 0.96957 1.01755 0.88639 1.23070 1.02883 0.91667 1.02777 1.23021 0.99932 1.02596 0.95767 1.22630 0.94111 1.01730 0.90095 0.96709 0.90607 0.93324 0.99079 0.95912 0.92758 0.90731 0.92971 0.92452 0.91842 0.92144 0.91768 0.91459 0.90743 0.89984 0.88135 0.89066 0.89039 0.88418 0.95199 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 8.63 60.07 0.52 1.14 16 2 N -0.52 -10.88 4.64 -237.00 -1.10 -11.98 16 3 C 0.16 4.03 3.39 -4.98 -0.02 4.01 16 4 C -0.51 -14.58 9.19 -34.44 -0.32 -14.90 16 5 H 0.08 2.50 7.75 -52.48 -0.41 2.09 16 6 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 7 N -0.90 -28.03 13.96 55.43 0.77 -27.25 16 8 Si 0.87 22.02 27.47 -169.99 -4.67 17.35 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.27 -6.54 6.54 56.52 0.37 -6.17 16 12 C 0.08 1.42 1.89 -68.27 -0.13 1.29 16 13 H 0.08 1.56 6.72 -51.93 -0.35 1.21 16 14 C -0.11 -1.60 4.18 -29.41 -0.12 -1.72 16 15 C -0.11 -1.33 5.30 -29.41 -0.16 -1.48 16 16 C -0.15 -1.61 5.60 -27.32 -0.15 -1.76 16 17 C 0.06 0.72 5.09 -4.49 -0.02 0.70 16 18 N -0.52 -7.48 4.83 -227.88 -1.10 -8.58 16 19 C 0.01 0.15 5.17 -67.71 -0.35 -0.20 16 20 C -0.17 -1.98 10.46 -26.73 -0.28 -2.26 16 21 C -0.18 -1.82 9.44 -26.73 -0.25 -2.07 16 22 C 0.04 0.68 3.30 -4.46 -0.01 0.67 16 23 H 0.01 0.27 6.51 -51.93 -0.34 -0.07 16 24 H 0.08 1.59 7.35 -51.93 -0.38 1.21 16 25 H 0.05 0.79 6.76 -51.93 -0.35 0.44 16 26 H -0.01 -0.21 6.02 -51.93 -0.31 -0.53 16 27 H 0.02 0.57 7.19 -51.93 -0.37 0.20 16 28 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 29 H 0.07 1.13 8.13 -51.93 -0.42 0.71 16 30 H 0.05 0.72 6.74 -51.93 -0.35 0.37 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.75 7.51 -51.93 -0.39 0.36 16 33 H 0.06 0.71 7.00 -51.93 -0.36 0.35 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.73 6.31 -51.93 -0.33 0.40 16 36 H 0.07 0.96 6.58 -51.93 -0.34 0.62 16 37 H 0.08 1.01 7.99 -51.93 -0.42 0.59 16 38 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.10 1.02 7.41 -51.93 -0.38 0.63 16 42 H 0.03 0.46 6.38 -51.93 -0.33 0.12 16 43 H 0.08 1.44 5.55 -51.93 -0.29 1.15 16 LS Contribution 315.66 15.07 4.76 4.76 Total: -1.00 -30.31 315.66 -10.14 -40.44 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -7.41 Total: -0.07 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -1.39 Total: -14.68 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -1.43 Total: -47.81 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.31 -10.14 -40.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260684674.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.134 kcal (2) G-P(sol) polarization free energy of solvation -30.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds