Wall clock time and date at job start Mon Mar 30 2020 05:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46901 * 110.99867 * 2 1 4 4 C 1.50699 * 109.47217 * 287.92720 * 3 2 1 5 5 H 1.08004 * 119.99993 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00187 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00026 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 119.99957 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.46855 * 90.00569 * 8 6 4 10 10 H 1.48506 * 109.47301 * 210.00164 * 8 6 4 11 11 H 1.48498 * 109.47366 * 330.00375 * 8 6 4 12 12 C 1.46904 * 110.99750 * 123.95115 * 2 1 3 13 13 H 1.08996 * 109.79238 * 189.57670 * 12 2 1 14 14 C 1.54312 * 109.63179 * 69.07534 * 12 2 1 15 15 C 1.45882 * 112.11051 * 161.71633 * 14 12 2 16 16 C 1.54311 * 112.18551 * 61.16696 * 15 14 12 17 17 C 1.50439 * 108.49833 * 281.45902 * 16 15 14 18 18 N 1.48004 * 112.82476 * 93.72841 * 17 16 15 19 19 C 1.46907 * 110.99684 * 84.83688 * 18 17 16 20 20 C 1.52998 * 117.49805 * 124.66793 * 19 18 17 21 21 C 1.53001 * 60.00080 * 252.51143 * 20 19 18 22 22 C 1.47996 * 114.63117 * 318.09292 * 18 17 16 23 23 H 1.08998 * 109.47011 * 302.41956 * 1 2 3 24 24 H 1.09000 * 109.46375 * 62.41865 * 1 2 3 25 25 H 1.08993 * 109.46847 * 182.41315 * 1 2 3 26 26 H 1.08993 * 109.47469 * 47.93239 * 3 2 1 27 27 H 1.09005 * 109.47092 * 167.93251 * 3 2 1 28 28 H 0.96997 * 119.99962 * 180.02562 * 7 6 4 29 29 H 1.08995 * 108.93874 * 41.06786 * 14 12 2 30 30 H 1.08997 * 108.94007 * 282.36996 * 14 12 2 31 31 H 1.08998 * 108.93504 * 181.86323 * 15 14 12 32 32 H 1.08996 * 108.93855 * 300.55686 * 15 14 12 33 33 H 1.09003 * 109.63330 * 41.16746 * 16 15 14 34 34 H 1.09002 * 109.62697 * 161.55230 * 16 15 14 35 35 H 1.08999 * 108.80856 * 214.59353 * 17 16 15 36 36 H 1.08995 * 108.81215 * 332.86567 * 17 16 15 37 37 H 1.08999 * 115.54786 * 270.37384 * 19 18 17 38 38 H 1.09002 * 117.49872 * 0.02562 * 20 19 18 39 39 H 1.09000 * 117.50162 * 145.01905 * 20 19 18 40 40 H 1.09003 * 117.49607 * 252.50956 * 21 20 19 41 41 H 1.08996 * 117.50123 * 107.49167 * 21 20 19 42 42 H 1.09000 * 108.80968 * 78.95324 * 22 18 17 43 43 H 1.08998 * 108.81168 * 197.33556 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7672 1.9972 -1.3518 5 1 1.2794 1.4326 -2.1328 6 6 2.1810 3.2903 -1.5917 7 7 1.9813 3.8365 -2.7713 8 14 3.0240 4.2669 -0.2408 9 1 4.4910 4.0480 -0.3136 10 1 2.7299 5.7118 -0.4174 11 1 2.5214 3.8175 1.0823 12 6 1.9954 -0.7660 1.1377 13 1 3.0718 -0.6145 1.2182 14 6 1.6966 -2.2663 0.9353 15 6 2.5369 -3.1118 1.7762 16 6 2.3179 -2.8399 3.2793 17 6 3.0634 -1.5873 3.6513 18 7 2.2182 -0.3743 3.5821 19 6 1.4635 -0.1867 4.8285 20 6 1.6192 1.1513 5.5540 21 6 2.2605 -0.1117 6.1324 22 6 1.3226 -0.3128 2.4055 23 1 -0.3633 0.5509 0.8675 24 1 -0.3632 0.4758 -0.9109 25 1 -0.3633 -1.0267 0.0433 26 1 1.4829 1.9574 0.7628 27 1 3.0639 1.3505 0.2149 28 1 2.2728 4.7461 -2.9402 29 1 1.8693 -2.5236 -0.1097 30 1 0.6507 -2.4545 1.1774 31 1 2.3071 -4.1569 1.5685 32 1 3.5828 -2.9248 1.5328 33 1 1.2543 -2.7053 3.4760 34 1 2.6944 -3.6806 3.8621 35 1 3.4437 -1.6933 4.6673 36 1 3.9080 -1.4664 2.9731 37 1 0.4860 -0.6677 4.8630 38 1 2.2812 1.8925 5.1064 39 1 0.7439 1.5510 6.0660 40 1 1.8071 -0.5429 7.0249 41 1 3.3447 -0.2015 6.0655 42 1 0.4556 -0.9469 2.5903 43 1 0.9842 0.7150 2.2747 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260684674.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:59 Heat of formation + Delta-G solvation = 19.925214 kcal Electronic energy + Delta-G solvation = -19942.653548 eV Core-core repulsion = 17215.903266 eV Total energy + Delta-G solvation = -2726.750282 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.01832 -38.52057 -36.80683 -34.67395 -33.69910 -31.90057 -29.61443 -27.59138 -26.38582 -25.60895 -23.23539 -23.07013 -22.11135 -20.70509 -20.04375 -19.05202 -17.75831 -16.82770 -16.60418 -16.33914 -15.85354 -15.58493 -15.33379 -14.70226 -14.66135 -14.53083 -14.05910 -13.69905 -13.42189 -13.26429 -13.12730 -12.89939 -12.55443 -12.43793 -12.31798 -12.20629 -12.06480 -11.94936 -11.68009 -11.53499 -11.39343 -11.25292 -11.14560 -10.92568 -10.78323 -9.13270 -9.00755 -8.29295 -6.31602 1.32730 1.33404 1.45373 2.32947 2.69449 2.86240 3.03940 3.29405 3.70774 3.79946 4.01037 4.01821 4.16364 4.18564 4.26555 4.28640 4.40487 4.47173 4.50556 4.62108 4.70325 4.71217 4.76560 4.84108 4.84720 4.91483 4.99195 5.04963 5.09529 5.13230 5.20444 5.25279 5.29247 5.31233 5.39874 5.47617 5.55170 5.95642 6.18004 6.24668 6.38685 6.67027 6.74530 7.31983 8.87424 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020145 B = 0.007039 C = 0.005749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.567694 B = 3977.019029 C = 4869.012053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.536 5.536 3 C 0.179 3.821 4 C -0.513 4.513 5 H 0.039 0.961 6 C 0.011 3.989 7 N -0.947 5.947 8 Si 0.943 3.057 9 H -0.266 1.266 10 H -0.279 1.279 11 H -0.257 1.257 12 C 0.084 3.916 13 H 0.071 0.929 14 C -0.102 4.102 15 C -0.113 4.113 16 C -0.138 4.138 17 C 0.058 3.942 18 N -0.537 5.537 19 C -0.003 4.003 20 C -0.179 4.179 21 C -0.150 4.150 22 C 0.057 3.943 23 H 0.019 0.981 24 H 0.046 0.954 25 H 0.079 0.921 26 H -0.014 1.014 27 H 0.019 0.981 28 H 0.267 0.733 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.116 0.884 41 H 0.098 0.902 42 H 0.040 0.960 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.163 -13.457 19.185 23.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.259 5.259 3 C 0.052 3.948 4 C -0.552 4.552 5 H 0.057 0.943 6 C -0.186 4.186 7 N -0.587 5.587 8 Si 0.766 3.234 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.181 1.181 12 C -0.025 4.025 13 H 0.089 0.911 14 C -0.140 4.140 15 C -0.150 4.150 16 C -0.176 4.176 17 C -0.068 4.068 18 N -0.262 5.262 19 C -0.112 4.112 20 C -0.216 4.216 21 C -0.187 4.187 22 C -0.072 4.072 23 H 0.037 0.963 24 H 0.065 0.935 25 H 0.098 0.902 26 H 0.003 0.997 27 H 0.037 0.963 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.122 0.878 40 H 0.134 0.866 41 H 0.117 0.883 42 H 0.058 0.942 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.654 -13.166 18.572 22.775 hybrid contribution -0.607 0.842 0.496 1.150 sum 0.047 -12.324 19.068 22.704 Atomic orbital electron populations 1.22204 0.87692 1.01113 0.99834 1.62131 1.08188 1.14726 1.40840 1.19852 0.94333 0.86021 0.94572 1.21269 1.38062 0.98081 0.97741 0.94278 1.25772 0.96474 0.98635 0.97765 1.70040 1.49285 1.15505 1.23918 0.85780 0.79544 0.77870 0.80162 1.19085 1.20454 1.18087 1.21591 0.99092 0.94599 0.87193 0.91122 1.20529 1.00321 0.92290 1.00854 1.20522 1.00119 0.99891 0.94508 1.21852 1.00645 0.98766 0.96375 1.21994 0.95521 0.86821 1.02496 1.61496 1.25207 1.38785 1.00703 1.22434 0.97656 1.02408 0.88723 1.23098 1.03473 0.91628 1.03449 1.23089 0.99866 1.00536 0.95240 1.22302 0.94638 0.99737 0.90481 0.96251 0.93486 0.90194 0.99652 0.96332 0.92414 0.91918 0.92147 0.90367 0.92046 0.92563 0.89305 0.89756 0.91851 0.89472 0.90212 0.87760 0.86595 0.88329 0.94175 0.93817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.53 8.63 127.69 1.10 2.63 16 2 N -0.54 -22.79 4.64 -903.75 -4.19 -26.98 16 3 C 0.18 9.02 3.39 85.56 0.29 9.31 16 4 C -0.51 -30.70 9.19 25.60 0.24 -30.46 16 5 H 0.04 2.59 7.75 -2.91 -0.02 2.57 16 6 C 0.01 0.65 5.47 84.65 0.46 1.12 16 7 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 8 Si 0.94 46.01 27.47 68.60 1.88 47.90 16 9 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 11 H -0.26 -12.06 6.54 99.48 0.65 -11.41 16 12 C 0.08 2.84 1.89 44.55 0.08 2.93 16 13 H 0.07 2.58 6.72 -2.39 -0.02 2.56 16 14 C -0.10 -2.71 4.18 28.86 0.12 -2.59 16 15 C -0.11 -2.31 5.30 28.86 0.15 -2.16 16 16 C -0.14 -2.54 5.60 30.21 0.17 -2.37 16 17 C 0.06 1.27 5.09 85.26 0.43 1.70 16 18 N -0.54 -14.57 4.83 -874.87 -4.22 -18.79 16 19 C 0.00 -0.08 5.17 44.91 0.23 0.15 16 20 C -0.18 -3.94 10.46 30.59 0.32 -3.62 16 21 C -0.15 -2.63 9.44 30.59 0.29 -2.34 16 22 C 0.06 1.78 3.30 85.29 0.28 2.06 16 23 H 0.02 0.72 6.51 -2.39 -0.02 0.70 16 24 H 0.05 2.05 7.35 -2.39 -0.02 2.04 16 25 H 0.08 2.54 6.76 -2.39 -0.02 2.52 16 26 H -0.01 -0.72 6.02 -2.39 -0.01 -0.74 16 27 H 0.02 0.95 7.19 -2.38 -0.02 0.93 16 28 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 29 H 0.06 1.82 8.13 -2.39 -0.02 1.80 16 30 H 0.06 1.51 6.74 -2.39 -0.02 1.49 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.31 7.51 -2.39 -0.02 1.29 16 33 H 0.06 1.12 7.00 -2.39 -0.02 1.10 16 34 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.54 6.31 -2.39 -0.02 1.53 16 36 H 0.06 1.52 6.58 -2.39 -0.02 1.50 16 37 H 0.09 1.91 7.99 -2.39 -0.02 1.89 16 38 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.10 1.97 8.14 -2.39 -0.02 1.96 16 40 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.10 1.74 7.41 -2.39 -0.02 1.72 16 42 H 0.04 1.15 6.38 -2.39 -0.02 1.14 16 43 H 0.04 1.65 5.55 -2.39 -0.01 1.63 16 Total: -1.00 -67.35 315.66 -1.15 -68.50 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.91 Total: 13.15 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: 4.17 Total: -23.64 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -8.12 Total: -105.91 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.88 Total: 47.90 kcal Total: -67.35 -1.15 -68.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260684674.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.423 kcal (2) G-P(sol) polarization free energy of solvation -67.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds