Wall clock time and date at job start Mon Mar 30 2020 05:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46905 * 110.99575 * 2 1 4 4 C 1.50697 * 109.46949 * 293.94984 * 3 2 1 5 5 H 1.07993 * 120.00381 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99483 * 179.97438 * 4 3 2 7 7 N 1.31506 * 120.00260 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99647 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46949 * 60.00459 * 8 6 4 10 10 H 1.48498 * 109.46824 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47277 * 300.00355 * 8 6 4 12 12 C 1.46891 * 111.00032 * 123.95517 * 2 1 3 13 13 H 1.08998 * 108.81832 * 187.56879 * 12 2 1 14 14 C 1.45882 * 108.84512 * 306.04433 * 12 2 1 15 15 C 1.54516 * 111.67242 * 182.31815 * 14 12 2 16 16 C 1.50535 * 108.96806 * 282.71100 * 15 14 12 17 17 C 1.54056 * 112.86555 * 91.61266 * 16 15 14 18 18 N 1.47938 * 113.41814 * 317.94003 * 17 16 15 19 19 C 1.46901 * 111.00324 * 192.11725 * 18 17 16 20 20 C 1.52997 * 117.50057 * 265.67280 * 19 18 17 21 21 C 1.52999 * 117.50169 * 197.01367 * 19 18 17 22 22 C 1.44304 * 113.64251 * 318.06825 * 18 17 16 23 23 H 1.09000 * 109.46853 * 296.04352 * 1 2 3 24 24 H 1.08998 * 109.47023 * 56.04869 * 1 2 3 25 25 H 1.09002 * 109.46708 * 176.04757 * 1 2 3 26 26 H 1.08999 * 109.46932 * 53.95633 * 3 2 1 27 27 H 1.09004 * 109.46407 * 173.95661 * 3 2 1 28 28 H 0.96999 * 120.00642 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.03743 * 61.75621 * 14 12 2 30 30 H 1.08997 * 109.04029 * 302.88686 * 14 12 2 31 31 H 1.08999 * 109.57487 * 42.59335 * 15 14 12 32 32 H 1.09000 * 109.57541 * 162.83524 * 15 14 12 33 33 H 1.09002 * 108.79480 * 212.70629 * 16 15 14 34 34 H 1.09004 * 108.79047 * 330.92294 * 16 15 14 35 35 H 1.08997 * 108.72145 * 196.87923 * 17 16 15 36 36 H 1.09002 * 108.51424 * 78.84800 * 17 16 15 37 37 H 1.09003 * 115.54483 * 51.33604 * 19 18 17 38 38 H 1.09007 * 117.49963 * 359.97438 * 20 19 18 39 39 H 1.09000 * 117.50070 * 145.01142 * 20 19 18 40 40 H 1.09002 * 117.49474 * 214.98199 * 21 19 18 41 41 H 1.08997 * 117.49829 * 359.96976 * 21 19 18 42 42 H 1.08997 * 109.69243 * 335.69164 * 22 18 17 43 43 H 1.09001 * 109.72764 * 215.12126 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0267 3.3495 -1.5284 7 7 2.7117 4.0020 -0.6149 8 14 1.5817 4.1873 -3.1377 9 1 0.1045 4.2236 -3.2848 10 1 2.1139 5.5736 -3.1377 11 1 2.1735 3.4303 -4.2700 12 6 1.9954 -0.7660 1.1375 13 1 3.0762 -0.6319 1.1816 14 6 1.4059 -0.2483 2.3674 15 6 1.9603 -0.9724 3.6147 16 6 1.2984 -2.3192 3.7333 17 6 2.0846 -3.4373 3.0226 18 7 2.6188 -3.0333 1.7035 19 6 3.1024 -4.1991 0.9519 20 6 4.5899 -4.5410 1.0584 21 6 4.0334 -3.9386 -0.2340 22 6 1.6904 -2.2589 0.9157 23 1 -0.3633 0.4512 0.9233 24 1 -0.3633 0.5739 -0.8524 25 1 -0.3633 -1.0253 -0.0708 26 1 1.5610 1.9274 0.8309 27 1 3.0797 1.3444 0.1082 28 1 2.9863 4.9181 -0.7768 29 1 0.3251 -0.3844 2.3283 30 1 1.6263 0.8162 2.4468 31 1 3.0377 -1.1027 3.5126 32 1 1.7470 -0.3811 4.5052 33 1 1.2006 -2.5706 4.7894 34 1 0.3021 -2.2605 3.2950 35 1 1.4263 -4.2951 2.8855 36 1 2.9168 -3.7346 3.6607 37 1 2.4002 -5.0285 0.8679 38 1 5.2098 -3.9005 1.6859 39 1 4.8663 -5.5952 1.0441 40 1 3.9437 -4.5968 -1.0982 41 1 4.2866 -2.9021 -0.4568 42 1 0.6701 -2.4763 1.2316 43 1 1.8086 -2.5051 -0.1395 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260684676.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:02 Heat of formation + Delta-G solvation = 37.788636 kcal Electronic energy + Delta-G solvation = -19788.452728 eV Core-core repulsion = 17062.477063 eV Total energy + Delta-G solvation = -2725.975666 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.60449 -37.31864 -35.28030 -32.66140 -32.41793 -30.32080 -27.15714 -25.85113 -25.38879 -23.94793 -22.14649 -21.56174 -20.85655 -19.49836 -18.82530 -16.57345 -16.29167 -15.56141 -15.19271 -14.58220 -14.39431 -14.04038 -13.78511 -13.38107 -13.13697 -13.05257 -12.46673 -12.38494 -11.96354 -11.60700 -11.39102 -11.27267 -11.05298 -10.86877 -10.79429 -10.53767 -10.45196 -10.39211 -10.32552 -10.23696 -9.98391 -9.91698 -9.59032 -9.15578 -8.37296 -8.04802 -7.07375 -5.97082 -3.97957 3.36491 3.40363 3.43391 3.81365 3.88014 4.47390 4.84820 5.00373 5.03463 5.06190 5.15926 5.20423 5.35022 5.37881 5.43012 5.54401 5.61936 5.73373 5.81079 5.84351 5.85919 5.96428 6.09216 6.13307 6.19189 6.23416 6.25356 6.32228 6.35720 6.53293 6.55667 6.76241 6.81699 6.84206 7.33083 7.41681 7.43856 7.51051 7.87254 8.18815 8.30691 8.65595 9.09773 9.65749 11.13677 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025553 B = 0.005553 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.487867 B = 5041.138255 C = 5590.905136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.538 5.538 3 C 0.195 3.805 4 C -0.506 4.506 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.091 3.909 13 H 0.078 0.922 14 C -0.148 4.148 15 C -0.107 4.107 16 C -0.118 4.118 17 C 0.071 3.929 18 N -0.520 5.520 19 C 0.009 3.991 20 C -0.168 4.168 21 C -0.165 4.165 22 C 0.080 3.920 23 H 0.015 0.985 24 H 0.071 0.929 25 H 0.041 0.959 26 H -0.008 1.008 27 H 0.028 0.972 28 H 0.261 0.739 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.027 0.973 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.033 0.967 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.900 -15.615 7.021 17.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.261 5.261 3 C 0.069 3.931 4 C -0.544 4.544 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.018 4.018 13 H 0.096 0.904 14 C -0.187 4.187 15 C -0.146 4.146 16 C -0.155 4.155 17 C -0.056 4.056 18 N -0.245 5.245 19 C -0.099 4.099 20 C -0.206 4.206 21 C -0.202 4.202 22 C -0.048 4.048 23 H 0.033 0.967 24 H 0.089 0.911 25 H 0.059 0.941 26 H 0.010 0.990 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.124 0.876 42 H 0.051 0.949 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.295 -15.358 6.698 16.757 hybrid contribution -1.210 0.500 -0.182 1.322 sum -1.505 -14.858 6.515 16.294 Atomic orbital electron populations 1.22250 0.89697 0.99160 1.00452 1.62357 1.06487 1.17761 1.39516 1.19707 0.95262 0.81769 0.96328 1.21152 1.34644 0.96842 1.01803 0.92029 1.24979 0.95392 0.97370 0.96870 1.69946 1.38466 1.11439 1.34073 0.86587 0.78629 0.78344 0.83985 1.20366 1.21413 1.20204 1.20450 1.00297 0.92141 0.88938 0.90362 1.21324 1.00463 1.01045 0.95859 1.21206 1.01206 0.94667 0.97509 1.21416 0.99157 0.95448 0.99514 1.22300 0.97515 0.95853 0.89966 1.60268 1.41323 1.19850 1.03056 1.22308 0.92621 0.94122 1.00879 1.23026 0.95755 1.00734 1.01063 1.23040 1.02758 1.03001 0.91413 1.21747 0.92531 0.93144 0.97374 0.96704 0.91063 0.94060 0.99039 0.95395 0.92956 0.92467 0.91482 0.91031 0.92749 0.91894 0.92535 0.95503 0.91415 0.90310 0.88322 0.89324 0.88985 0.87595 0.94899 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 8.59 60.07 0.52 1.17 16 2 N -0.54 -11.72 4.65 -239.82 -1.11 -12.83 16 3 C 0.19 5.13 4.23 -4.97 -0.02 5.11 16 4 C -0.51 -14.38 8.46 -34.44 -0.29 -14.67 16 5 H 0.06 1.73 7.12 -52.49 -0.37 1.36 16 6 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -27.07 13.28 55.43 0.74 -26.33 16 8 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.09 1.68 1.84 -70.57 -0.13 1.55 16 13 H 0.08 1.60 7.80 -51.93 -0.41 1.19 16 14 C -0.15 -2.53 3.94 -29.30 -0.12 -2.65 16 15 C -0.11 -1.50 5.62 -27.17 -0.15 -1.66 16 16 C -0.12 -1.41 5.29 -27.41 -0.15 -1.55 16 17 C 0.07 0.85 5.44 -2.70 -0.01 0.83 16 18 N -0.52 -7.17 4.12 -226.57 -0.93 -8.10 16 19 C 0.01 0.12 4.81 -67.71 -0.33 -0.21 16 20 C -0.17 -1.84 10.46 -26.70 -0.28 -2.12 16 21 C -0.16 -2.00 9.80 -26.70 -0.26 -2.26 16 22 C 0.08 1.26 4.01 -4.70 -0.02 1.24 16 23 H 0.01 0.29 6.23 -51.93 -0.32 -0.04 16 24 H 0.07 1.52 6.76 -51.93 -0.35 1.17 16 25 H 0.04 0.71 7.10 -51.93 -0.37 0.34 16 26 H -0.01 -0.23 6.91 -51.93 -0.36 -0.59 16 27 H 0.03 0.80 7.89 -51.93 -0.41 0.39 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.06 0.96 5.65 -51.93 -0.29 0.67 16 30 H 0.07 1.32 6.54 -51.93 -0.34 0.98 16 31 H 0.07 1.06 7.79 -51.93 -0.40 0.65 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.71 6.67 -51.93 -0.35 0.36 16 35 H 0.03 0.30 8.01 -51.93 -0.42 -0.11 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.91 8.13 -51.93 -0.42 0.49 16 38 H 0.10 1.15 8.14 -51.92 -0.42 0.72 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.03 0.50 6.39 -51.93 -0.33 0.17 16 43 H 0.08 1.31 7.15 -51.93 -0.37 0.94 16 LS Contribution 322.31 15.07 4.86 4.86 Total: -1.00 -29.28 322.31 -10.42 -39.70 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -7.61 Total: -0.42 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -1.34 Total: -13.74 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -1.31 Total: -47.27 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.28 -10.42 -39.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260684676.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.486 kcal (2) G-P(sol) polarization free energy of solvation -29.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds