Wall clock time and date at job start Mon Mar 30 2020 05:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46905 * 110.99575 * 2 1 4 4 C 1.50697 * 109.46949 * 293.94984 * 3 2 1 5 5 H 1.07993 * 120.00381 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99483 * 179.97438 * 4 3 2 7 7 N 1.31506 * 120.00260 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99647 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46949 * 60.00459 * 8 6 4 10 10 H 1.48498 * 109.46824 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47277 * 300.00355 * 8 6 4 12 12 C 1.46891 * 111.00032 * 123.95517 * 2 1 3 13 13 H 1.08998 * 108.81832 * 187.56879 * 12 2 1 14 14 C 1.45882 * 108.84512 * 306.04433 * 12 2 1 15 15 C 1.54516 * 111.67242 * 182.31815 * 14 12 2 16 16 C 1.50535 * 108.96806 * 282.71100 * 15 14 12 17 17 C 1.54056 * 112.86555 * 91.61266 * 16 15 14 18 18 N 1.47938 * 113.41814 * 317.94003 * 17 16 15 19 19 C 1.46901 * 111.00324 * 192.11725 * 18 17 16 20 20 C 1.52997 * 117.50057 * 265.67280 * 19 18 17 21 21 C 1.52999 * 117.50169 * 197.01367 * 19 18 17 22 22 C 1.44304 * 113.64251 * 318.06825 * 18 17 16 23 23 H 1.09000 * 109.46853 * 296.04352 * 1 2 3 24 24 H 1.08998 * 109.47023 * 56.04869 * 1 2 3 25 25 H 1.09002 * 109.46708 * 176.04757 * 1 2 3 26 26 H 1.08999 * 109.46932 * 53.95633 * 3 2 1 27 27 H 1.09004 * 109.46407 * 173.95661 * 3 2 1 28 28 H 0.96999 * 120.00642 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.03743 * 61.75621 * 14 12 2 30 30 H 1.08997 * 109.04029 * 302.88686 * 14 12 2 31 31 H 1.08999 * 109.57487 * 42.59335 * 15 14 12 32 32 H 1.09000 * 109.57541 * 162.83524 * 15 14 12 33 33 H 1.09002 * 108.79480 * 212.70629 * 16 15 14 34 34 H 1.09004 * 108.79047 * 330.92294 * 16 15 14 35 35 H 1.08997 * 108.72145 * 196.87923 * 17 16 15 36 36 H 1.09002 * 108.51424 * 78.84800 * 17 16 15 37 37 H 1.09003 * 115.54483 * 51.33604 * 19 18 17 38 38 H 1.09007 * 117.49963 * 359.97438 * 20 19 18 39 39 H 1.09000 * 117.50070 * 145.01142 * 20 19 18 40 40 H 1.09002 * 117.49474 * 214.98199 * 21 19 18 41 41 H 1.08997 * 117.49829 * 359.96976 * 21 19 18 42 42 H 1.08997 * 109.69243 * 335.69164 * 22 18 17 43 43 H 1.09001 * 109.72764 * 215.12126 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0267 3.3495 -1.5284 7 7 2.7117 4.0020 -0.6149 8 14 1.5817 4.1873 -3.1377 9 1 0.1045 4.2236 -3.2848 10 1 2.1139 5.5736 -3.1377 11 1 2.1735 3.4303 -4.2700 12 6 1.9954 -0.7660 1.1375 13 1 3.0762 -0.6319 1.1816 14 6 1.4059 -0.2483 2.3674 15 6 1.9603 -0.9724 3.6147 16 6 1.2984 -2.3192 3.7333 17 6 2.0846 -3.4373 3.0226 18 7 2.6188 -3.0333 1.7035 19 6 3.1024 -4.1991 0.9519 20 6 4.5899 -4.5410 1.0584 21 6 4.0334 -3.9386 -0.2340 22 6 1.6904 -2.2589 0.9157 23 1 -0.3633 0.4512 0.9233 24 1 -0.3633 0.5739 -0.8524 25 1 -0.3633 -1.0253 -0.0708 26 1 1.5610 1.9274 0.8309 27 1 3.0797 1.3444 0.1082 28 1 2.9863 4.9181 -0.7768 29 1 0.3251 -0.3844 2.3283 30 1 1.6263 0.8162 2.4468 31 1 3.0377 -1.1027 3.5126 32 1 1.7470 -0.3811 4.5052 33 1 1.2006 -2.5706 4.7894 34 1 0.3021 -2.2605 3.2950 35 1 1.4263 -4.2951 2.8855 36 1 2.9168 -3.7346 3.6607 37 1 2.4002 -5.0285 0.8679 38 1 5.2098 -3.9005 1.6859 39 1 4.8663 -5.5952 1.0441 40 1 3.9437 -4.5968 -1.0982 41 1 4.2866 -2.9021 -0.4568 42 1 0.6701 -2.4763 1.2316 43 1 1.8086 -2.5051 -0.1395 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260684676.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:01 Heat of formation + Delta-G solvation = 19.170136 kcal Electronic energy + Delta-G solvation = -19789.260087 eV Core-core repulsion = 17062.477063 eV Total energy + Delta-G solvation = -2726.783025 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.91138 -38.60095 -36.58118 -34.72246 -33.58775 -31.83265 -29.12643 -27.27803 -26.80112 -25.47847 -23.33450 -23.02902 -21.98188 -20.62412 -20.32929 -18.53029 -17.58796 -17.08555 -16.44112 -16.28432 -15.78564 -15.37291 -15.12154 -14.82883 -14.63840 -14.37721 -14.07312 -13.84470 -13.49742 -12.96595 -12.93413 -12.69349 -12.58152 -12.38753 -12.29878 -12.17635 -11.94790 -11.76050 -11.64275 -11.52716 -11.40347 -11.27419 -11.11101 -10.86197 -10.59195 -9.15187 -8.85586 -8.19094 -6.29739 1.40283 1.44153 1.51953 2.40185 2.74087 2.95168 3.12735 3.49036 3.76984 3.95712 4.05013 4.08104 4.12854 4.21412 4.30907 4.39219 4.46089 4.54714 4.64146 4.68040 4.73538 4.77551 4.81553 4.86720 4.90451 5.05760 5.09621 5.11923 5.16585 5.19835 5.23117 5.30076 5.36061 5.38164 5.45476 5.50420 5.66956 6.08202 6.31570 6.33352 6.40278 6.71511 6.87364 7.39940 8.91708 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025553 B = 0.005553 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.487867 B = 5041.138255 C = 5590.905136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.546 5.546 3 C 0.214 3.786 4 C -0.524 4.524 5 H 0.063 0.937 6 C 0.000 4.000 7 N -0.936 5.936 8 Si 0.970 3.030 9 H -0.266 1.266 10 H -0.283 1.283 11 H -0.269 1.269 12 C 0.097 3.903 13 H 0.047 0.953 14 C -0.142 4.142 15 C -0.099 4.099 16 C -0.114 4.114 17 C 0.070 3.930 18 N -0.537 5.537 19 C 0.004 3.996 20 C -0.151 4.151 21 C -0.177 4.177 22 C 0.099 3.901 23 H 0.015 0.985 24 H 0.053 0.947 25 H 0.074 0.926 26 H -0.036 1.036 27 H -0.008 1.008 28 H 0.264 0.736 29 H 0.064 0.936 30 H 0.028 0.972 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.043 0.957 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.074 0.926 42 H 0.044 0.956 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.956 -17.747 7.054 19.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.270 5.270 3 C 0.088 3.912 4 C -0.562 4.562 5 H 0.081 0.919 6 C -0.197 4.197 7 N -0.577 5.577 8 Si 0.795 3.205 9 H -0.191 1.191 10 H -0.208 1.208 11 H -0.194 1.194 12 C -0.013 4.013 13 H 0.066 0.934 14 C -0.181 4.181 15 C -0.138 4.138 16 C -0.151 4.151 17 C -0.056 4.056 18 N -0.262 5.262 19 C -0.104 4.104 20 C -0.189 4.189 21 C -0.214 4.214 22 C -0.030 4.030 23 H 0.034 0.966 24 H 0.072 0.928 25 H 0.093 0.907 26 H -0.018 1.018 27 H 0.010 0.990 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.356 -17.521 6.743 18.823 hybrid contribution -0.829 1.144 -0.144 1.420 sum -2.185 -16.377 6.600 17.791 Atomic orbital electron populations 1.22224 0.88093 1.00922 0.99708 1.62275 1.07930 1.15071 1.41717 1.19284 0.92935 0.84146 0.94844 1.21473 1.34843 0.97501 1.02429 0.91890 1.25941 0.95001 0.98057 1.00746 1.70090 1.39406 1.11866 1.36315 0.85425 0.78870 0.77131 0.79112 1.19099 1.20823 1.19352 1.20479 0.98337 0.94004 0.88442 0.93428 1.21227 1.00852 0.99015 0.97021 1.21135 1.00538 0.96071 0.96019 1.21397 0.98578 0.93812 1.01354 1.22375 0.98246 0.96196 0.88796 1.60157 1.41107 1.21024 1.03889 1.22428 0.93534 0.93847 1.00588 1.23066 0.94541 1.01895 0.99361 1.23003 1.03917 1.01793 0.92687 1.21416 0.93504 0.90919 0.97121 0.96620 0.92765 0.90710 1.01832 0.98987 0.92734 0.91749 0.95329 0.92148 0.91611 0.89142 0.92628 0.93850 0.90387 0.88598 0.89353 0.86636 0.87293 0.90720 0.93738 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.54 8.59 127.69 1.10 2.64 16 2 N -0.55 -24.70 4.65 -912.66 -4.24 -28.94 16 3 C 0.21 11.99 4.23 85.56 0.36 12.35 16 4 C -0.52 -30.75 8.46 25.60 0.22 -30.53 16 5 H 0.06 3.60 7.12 -2.91 -0.02 3.58 16 6 C 0.00 0.02 5.46 84.66 0.46 0.48 16 7 N -0.94 -58.11 13.28 21.45 0.28 -57.83 16 8 Si 0.97 45.31 29.54 68.60 2.03 47.34 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 12 C 0.10 3.67 1.84 43.07 0.08 3.75 16 13 H 0.05 2.08 7.80 -2.39 -0.02 2.06 16 14 C -0.14 -5.00 3.94 28.93 0.11 -4.88 16 15 C -0.10 -2.70 5.62 30.31 0.17 -2.53 16 16 C -0.11 -2.41 5.29 30.15 0.16 -2.25 16 17 C 0.07 1.47 5.44 86.46 0.47 1.94 16 18 N -0.54 -14.05 4.12 -870.74 -3.58 -17.63 16 19 C 0.00 0.10 4.81 44.91 0.22 0.31 16 20 C -0.15 -3.00 10.46 30.62 0.32 -2.68 16 21 C -0.18 -4.15 9.80 30.62 0.30 -3.85 16 22 C 0.10 3.02 4.01 87.12 0.35 3.37 16 23 H 0.02 0.61 6.23 -2.39 -0.01 0.59 16 24 H 0.05 2.32 6.76 -2.39 -0.02 2.31 16 25 H 0.07 2.45 7.10 -2.39 -0.02 2.44 16 26 H -0.04 -2.17 6.91 -2.39 -0.02 -2.18 16 27 H -0.01 -0.49 7.89 -2.39 -0.02 -0.51 16 28 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 29 H 0.06 2.15 5.65 -2.38 -0.01 2.13 16 30 H 0.03 1.20 6.54 -2.39 -0.02 1.18 16 31 H 0.06 1.78 7.79 -2.39 -0.02 1.77 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.05 1.21 6.67 -2.38 -0.02 1.20 16 35 H 0.04 0.80 8.01 -2.39 -0.02 0.78 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.10 1.87 8.13 -2.39 -0.02 1.85 16 38 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.04 1.26 6.39 -2.39 -0.02 1.24 16 43 H 0.07 2.19 7.15 -2.39 -0.02 2.18 16 Total: -1.00 -65.69 322.31 -0.24 -65.93 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.96 Total: 13.00 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: 4.32 Total: -21.88 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -7.54 Total: -104.39 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -65.69 -0.24 -65.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260684676.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.103 kcal (2) G-P(sol) polarization free energy of solvation -65.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds